Wall clock time and date at job start Wed Apr 1 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46910 * 2 1 4 4 C 1.50708 * 109.46843 * 119.99496 * 2 1 3 5 5 N 1.30452 * 125.98922 * 299.96118 * 4 2 1 6 6 N 1.39929 * 108.89565 * 180.02562 * 5 4 2 7 7 C 1.46503 * 125.75506 * 179.97438 * 6 5 4 8 8 C 1.34266 * 108.49183 * 359.75429 * 6 5 4 9 9 C 1.38042 * 107.41404 * 0.38971 * 8 6 5 10 10 C 1.47431 * 126.40971 * 179.87469 * 9 8 6 11 11 O 1.21604 * 119.99836 * 171.92135 * 10 9 8 12 12 N 1.34779 * 120.00067 * 351.91879 * 10 9 8 13 13 C 1.48257 * 127.73153 * 173.42143 * 12 10 9 14 14 C 1.54720 * 104.66502 * 141.21347 * 13 12 10 15 15 C 1.53038 * 104.47694 * 23.66445 * 14 13 12 16 16 C 1.53878 * 111.37364 * 121.00940 * 15 14 13 17 17 C 1.55136 * 101.45251 * 154.99943 * 16 15 14 18 18 N 1.47541 * 105.06826 * 324.20831 * 17 16 15 19 19 C 1.36935 * 125.67561 * 203.97505 * 18 17 16 20 20 H 1.07996 * 120.00421 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99899 * 0.02562 * 19 18 17 22 22 N 1.31618 * 120.00054 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47001 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47078 * 120.00116 * 23 21 19 26 26 H 1.48496 * 109.46730 * 239.99659 * 23 21 19 27 27 C 1.47599 * 108.51676 * 23.93642 * 18 17 16 28 28 C 1.48443 * 127.73538 * 353.44863 * 12 10 9 29 29 H 1.08999 * 109.47252 * 300.00156 * 1 2 3 30 30 H 1.09000 * 109.46782 * 60.00336 * 1 2 3 31 31 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47459 * 239.99339 * 2 1 3 33 33 H 1.09001 * 109.46721 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47123 * 299.99455 * 3 2 1 35 35 H 1.08999 * 109.47290 * 59.99868 * 3 2 1 36 36 H 1.08997 * 109.46852 * 89.97960 * 7 6 5 37 37 H 1.09000 * 109.47299 * 209.97949 * 7 6 5 38 38 H 1.09000 * 109.46781 * 329.97887 * 7 6 5 39 39 H 1.07999 * 126.29293 * 180.24603 * 8 6 5 40 40 H 1.08995 * 110.40048 * 22.41896 * 13 12 10 41 41 H 1.08996 * 110.40174 * 260.00393 * 13 12 10 42 42 H 1.09000 * 110.43280 * 264.92125 * 14 13 12 43 43 H 1.09000 * 110.53714 * 142.46729 * 14 13 12 44 44 H 1.08999 * 111.02605 * 36.95574 * 16 15 14 45 45 H 1.08999 * 111.06670 * 273.06039 * 16 15 14 46 46 H 1.08996 * 110.34160 * 83.14036 * 17 16 15 47 47 H 1.09006 * 110.33920 * 205.28382 * 17 16 15 48 48 H 0.97001 * 120.00212 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.94260 * 238.65770 * 27 18 17 50 50 H 1.08997 * 109.96010 * 117.41398 * 27 18 17 51 51 H 1.08998 * 110.46388 * 99.67903 * 28 12 10 52 52 H 1.09000 * 110.46829 * 337.09369 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7908 -0.3675 2.4659 6 7 2.4307 -1.2720 3.3206 7 6 2.4039 -1.2317 4.7848 8 6 3.0695 -2.1858 2.5725 9 6 2.8478 -1.8639 1.2486 10 6 3.3607 -2.5915 0.0734 11 8 2.9754 -2.2949 -1.0412 12 7 4.2568 -3.5854 0.2344 13 6 4.7805 -4.5109 -0.7986 14 6 6.2782 -4.6805 -0.4495 15 6 6.3632 -4.3493 1.0421 16 6 6.9244 -5.5336 1.8485 17 6 7.5182 -4.8101 3.0857 18 7 8.0542 -3.5379 2.5654 19 6 9.0468 -2.7931 3.1444 20 1 9.3695 -1.8716 2.6830 21 6 9.6381 -3.2227 4.3246 22 7 9.2444 -4.3455 4.8872 23 14 10.9916 -2.2064 5.1150 24 1 11.2477 -0.9974 4.2917 25 1 10.5709 -1.7970 6.4790 26 1 12.2326 -3.0173 5.2022 27 6 7.3414 -3.2047 1.3166 28 6 4.9398 -3.9989 1.4857 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.5577 -1.8143 5.1488 37 1 3.3300 -1.6520 5.1769 38 1 2.3040 -0.1987 5.1180 39 1 3.6518 -3.0182 2.9392 40 1 4.6688 -4.0748 -1.7913 41 1 4.2668 -5.4707 -0.7444 42 1 6.8851 -3.9848 -1.0290 43 1 6.5992 -5.7063 -0.6305 44 1 7.7018 -6.0542 1.2893 45 1 6.1298 -6.2201 2.1409 46 1 6.7388 -4.6195 3.8234 47 1 8.3177 -5.4064 3.5257 48 1 9.6579 -4.6459 5.7117 49 1 8.0522 -3.1173 0.4948 50 1 6.7954 -2.2692 1.4380 51 1 4.4495 -4.8715 1.9171 52 1 4.9552 -3.1767 2.2012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041828914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:41 Heat of formation + Delta-G solvation = 77.467617 kcal Electronic energy + Delta-G solvation = -32064.802243 eV Core-core repulsion = 28067.033373 eV Total energy + Delta-G solvation = -3997.768870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.54663 -39.91779 -38.11458 -35.94701 -35.39970 -32.79826 -32.45165 -31.29789 -29.92684 -29.04568 -28.05181 -27.12147 -27.09593 -25.80543 -24.50518 -22.90734 -22.24075 -21.62575 -20.38306 -19.99182 -19.05153 -18.49327 -16.96474 -16.90411 -16.22900 -15.83162 -15.34904 -15.23724 -14.87445 -14.76463 -14.53563 -14.26802 -13.90269 -13.70312 -13.59219 -13.30882 -13.22891 -12.91347 -12.65843 -12.46192 -12.28837 -12.12429 -12.04538 -11.63320 -11.61402 -11.50352 -11.41261 -11.19349 -11.15288 -10.99028 -10.95189 -10.86295 -10.71107 -10.24084 -10.06389 -9.97848 -9.81221 -9.65822 -9.44895 -9.36694 -8.75289 -8.70668 -8.45559 -6.89364 -5.71811 -3.12773 1.51648 2.19155 2.29921 3.12589 3.34666 3.41505 3.43239 3.55234 4.26638 4.43099 4.53520 4.69147 4.75267 4.78214 4.97775 4.98698 5.01375 5.18921 5.21165 5.26648 5.31719 5.33771 5.41271 5.44096 5.51659 5.58903 5.64530 5.64887 5.70657 5.79233 5.84540 5.89191 5.91681 5.94112 6.01337 6.04992 6.18331 6.25553 6.30578 6.32793 6.40877 6.50469 6.55659 6.57341 6.72218 6.77054 6.80850 7.40097 7.56970 7.57561 7.74211 7.78918 8.29154 8.38981 9.16235 9.76420 10.41640 11.32108 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.003445 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.979497 B = 8126.040693 C = 9378.941488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.140 4.140 4 C 0.140 3.860 5 N -0.299 5.299 6 N -0.361 5.361 7 C 0.096 3.904 8 C 0.096 3.904 9 C -0.286 4.286 10 C 0.618 3.382 11 O -0.550 6.550 12 N -0.621 5.621 13 C 0.109 3.891 14 C -0.120 4.120 15 C -0.083 4.083 16 C -0.132 4.132 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.219 4.219 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.151 3.849 28 C 0.108 3.892 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.193 0.807 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.010 0.990 47 H 0.106 0.894 48 H 0.251 0.749 49 H 0.027 0.973 50 H 0.021 0.979 51 H 0.073 0.927 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.113 1.065 -5.442 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 C -0.198 4.198 4 C -0.028 4.028 5 N -0.120 5.120 6 N -0.138 5.138 7 C -0.045 4.045 8 C -0.055 4.055 9 C -0.301 4.301 10 C 0.409 3.591 11 O -0.429 6.429 12 N -0.354 5.354 13 C -0.013 4.013 14 C -0.159 4.159 15 C -0.084 4.084 16 C -0.171 4.171 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.572 5.572 23 Si 0.743 3.257 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.025 3.975 28 C -0.015 4.015 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.209 0.791 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.028 0.972 47 H 0.124 0.876 48 H 0.062 0.938 49 H 0.045 0.955 50 H 0.039 0.961 51 H 0.091 0.909 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.853 2.177 -4.891 16.733 hybrid contribution 1.283 -0.189 0.343 1.342 sum -14.570 1.987 -4.548 15.392 Atomic orbital electron populations 1.21757 0.94029 1.01852 1.01853 1.19944 0.95874 0.95599 0.93519 1.21789 1.01291 0.94805 1.01900 1.22326 0.94123 0.92971 0.93377 1.77093 1.20355 1.14494 1.00057 1.48347 1.37765 1.20541 1.07157 1.22027 1.04072 1.05072 0.73365 1.23833 0.95391 0.95064 0.91201 1.20110 1.13663 1.03981 0.92365 1.16788 0.77219 0.77588 0.87463 1.90670 1.60300 1.66338 1.25616 1.48891 1.42396 1.32710 1.11403 1.22354 0.93679 0.92534 0.92755 1.22495 0.95291 1.02436 0.95635 1.21574 0.93972 0.98249 0.94608 1.22998 0.99426 0.95449 0.99227 1.21975 0.97635 0.87205 0.90485 1.44688 1.41115 1.23768 1.23497 1.19124 1.09436 1.02426 1.03795 0.90550 1.24751 1.00169 0.97856 0.97836 1.69798 1.44593 1.22176 1.20592 0.86032 0.81532 0.79148 0.79031 1.20552 1.21798 1.21714 1.21269 0.92221 0.93776 0.90246 1.22710 0.91771 0.99986 0.87005 0.92492 0.92100 0.92766 0.86661 0.92632 0.92070 0.92419 0.90315 0.88608 0.88886 0.79056 0.90073 0.91368 0.90780 0.90148 0.91571 0.92065 0.97238 0.87645 0.93827 0.95500 0.96146 0.90893 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C -0.03 -0.39 3.26 -91.77 -0.30 -0.69 16 3 C -0.14 -1.66 9.18 37.16 0.34 -1.31 16 4 C 0.14 2.10 5.77 -82.02 -0.47 1.63 16 5 N -0.30 -4.40 12.50 33.90 0.42 -3.98 16 6 N -0.36 -4.66 3.98 -67.60 -0.27 -4.93 16 7 C 0.10 0.82 11.44 59.85 0.68 1.51 16 8 C 0.10 1.29 9.85 -16.56 -0.16 1.13 16 9 C -0.29 -4.41 6.06 -105.07 -0.64 -5.04 16 10 C 0.62 10.09 7.89 -12.52 -0.10 9.99 16 11 O -0.55 -10.02 14.86 5.27 0.08 -9.95 16 12 N -0.62 -9.05 3.33 -170.78 -0.57 -9.62 16 13 C 0.11 1.39 7.10 -2.17 -0.02 1.37 16 14 C -0.12 -1.57 6.31 -25.81 -0.16 -1.74 16 15 C -0.08 -1.29 0.79 -153.93 -0.12 -1.41 16 16 C -0.13 -2.19 5.90 -25.14 -0.15 -2.34 16 17 C 0.15 3.35 5.81 -2.34 -0.01 3.34 16 18 N -0.60 -14.58 3.42 -170.16 -0.58 -15.16 16 19 C -0.22 -5.91 10.29 -15.06 -0.15 -6.06 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -25.64 10.09 55.49 0.56 -25.08 16 23 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.15 3.01 6.37 -3.42 -0.02 2.99 16 28 C 0.11 1.51 4.57 -2.89 -0.01 1.50 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 1.71 5.65 -51.93 -0.29 1.42 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.19 2.24 5.06 -52.49 -0.27 1.97 16 40 H 0.08 1.06 7.85 -51.93 -0.41 0.65 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.01 7.41 -51.93 -0.38 0.63 16 43 H 0.08 0.93 7.62 -51.93 -0.40 0.53 16 44 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 45 H 0.06 0.86 7.65 -51.93 -0.40 0.47 16 46 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.11 2.69 5.88 -51.93 -0.31 2.39 16 48 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 49 H 0.03 0.55 7.49 -51.93 -0.39 0.16 16 50 H 0.02 0.43 7.63 -51.93 -0.40 0.03 16 51 H 0.07 0.89 7.59 -51.93 -0.39 0.50 16 52 H 0.09 1.31 4.57 -51.93 -0.24 1.08 16 LS Contribution 402.29 15.07 6.06 6.06 Total: -1.00 -32.41 402.29 -8.84 -41.25 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.47 Total: 1.64 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.05 Total: 3.28 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.44 Total: -58.77 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.41 -8.84 -41.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041828914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.717 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds