Wall clock time and date at job start Wed Apr 1 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46946 * 2 1 4 4 C 1.53000 * 109.47283 * 119.99588 * 2 1 3 5 5 C 1.50694 * 109.47168 * 175.00057 * 4 2 1 6 6 N 1.30853 * 125.42160 * 304.97168 * 5 4 2 7 7 C 1.33322 * 109.68673 * 179.78313 * 6 5 4 8 8 C 1.36662 * 107.78296 * 0.38825 * 7 6 5 9 9 C 1.46767 * 126.83955 * 179.89126 * 8 7 6 10 10 O 1.21678 * 119.99842 * 26.71503 * 9 8 7 11 11 N 1.34771 * 119.99704 * 206.70944 * 9 8 7 12 12 C 1.46600 * 119.75786 * 359.57740 * 11 9 8 13 13 C 1.53891 * 110.71369 * 132.25224 * 12 11 9 14 14 C 1.51980 * 107.29129 * 51.81327 * 13 12 11 15 15 H 1.08999 * 111.56935 * 56.85573 * 14 13 12 16 16 C 1.53699 * 114.99998 * 184.56987 * 14 13 12 17 17 C 1.55299 * 101.81605 * 153.45537 * 16 14 13 18 18 N 1.48158 * 107.04213 * 337.55434 * 17 16 14 19 19 C 1.36935 * 126.39545 * 174.97673 * 18 17 16 20 20 H 1.07999 * 119.99777 * 180.02562 * 19 18 17 21 21 C 1.38819 * 119.99990 * 0.02562 * 19 18 17 22 22 N 1.31614 * 119.99816 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99748 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47196 * 60.00220 * 23 21 19 25 25 H 1.48500 * 109.47080 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47320 * 300.00439 * 23 21 19 27 27 C 1.45500 * 107.20270 * 354.99841 * 18 17 16 28 28 H 1.09004 * 109.56849 * 273.37022 * 27 18 17 29 29 C 1.47799 * 119.75505 * 179.57625 * 11 9 8 30 30 N 1.34498 * 125.41592 * 125.00221 * 5 4 2 31 31 H 0.97001 * 126.47537 * 359.96246 * 30 5 4 32 32 H 1.09003 * 109.47354 * 300.00312 * 1 2 3 33 33 H 1.09002 * 109.47117 * 60.00524 * 1 2 3 34 34 H 1.09006 * 109.47157 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47354 * 239.99688 * 2 1 3 36 36 H 1.08993 * 109.47381 * 59.99860 * 3 2 1 37 37 H 1.09007 * 109.47042 * 180.02562 * 3 2 1 38 38 H 1.09002 * 109.46785 * 299.99679 * 3 2 1 39 39 H 1.09000 * 109.46577 * 54.99684 * 4 2 1 40 40 H 1.09000 * 109.47059 * 295.00724 * 4 2 1 41 41 H 1.07995 * 126.10274 * 180.27334 * 7 6 5 42 42 H 1.08998 * 109.22787 * 11.93808 * 12 11 9 43 43 H 1.08998 * 109.22691 * 252.57112 * 12 11 9 44 44 H 1.09000 * 109.88892 * 292.37057 * 13 12 11 45 45 H 1.08991 * 109.89005 * 171.26020 * 13 12 11 46 46 H 1.09001 * 110.95838 * 35.32481 * 16 14 13 47 47 H 1.08996 * 110.98721 * 271.60283 * 16 14 13 48 48 H 1.08998 * 109.91877 * 218.20964 * 17 16 14 49 49 H 1.09000 * 110.08384 * 96.99953 * 17 16 14 50 50 H 0.97003 * 119.99590 * 179.97438 * 22 21 19 51 51 H 1.09000 * 110.06429 * 112.03964 * 29 11 9 52 52 H 1.09005 * 110.06565 * 350.47786 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1889 6 7 4.2252 -1.3602 0.2074 7 6 5.5289 -1.2865 0.4763 8 6 5.6702 -0.6847 1.6952 9 6 6.9284 -0.3969 2.3938 10 8 7.9534 -0.2338 1.7587 11 7 6.9484 -0.3132 3.7388 12 6 5.7086 -0.5014 4.4980 13 6 5.9294 -1.4763 5.6681 14 6 7.1352 -0.9795 6.4485 15 1 6.9966 0.0463 6.7901 16 6 7.5830 -1.8913 7.6020 17 6 9.0935 -1.5475 7.7111 18 7 9.5074 -0.9892 6.4026 19 6 10.7350 -0.4669 6.0937 20 1 10.9254 -0.0857 5.1014 21 6 11.7346 -0.4274 7.0562 22 7 11.5026 -0.8924 8.2653 23 14 13.4089 0.2858 6.6349 24 1 13.2532 1.7035 6.2211 25 1 14.2924 0.2116 7.8262 26 1 14.0123 -0.4912 5.5225 27 6 8.3657 -1.0991 5.5073 28 1 8.3674 -2.0802 5.0323 29 6 8.2202 -0.0324 4.4374 30 7 4.3932 -0.3959 2.1357 31 1 4.1554 0.0378 2.9702 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.1300 1.4425 -0.0005 38 1 1.6766 1.9563 -0.8900 39 1 1.6053 -1.7197 1.2952 40 1 1.7516 -0.1582 2.1370 41 1 6.3300 -1.6408 -0.1553 42 1 4.9402 -0.9022 3.8370 43 1 5.3780 0.4606 4.8898 44 1 6.1230 -2.4781 5.2846 45 1 5.0501 -1.4881 6.3119 46 1 7.4396 -2.9414 7.3471 47 1 7.0584 -1.6408 8.5239 48 1 9.6652 -2.4500 7.9272 49 1 9.2536 -0.8095 8.4972 50 1 12.2012 -0.8651 8.9377 51 1 8.1844 0.9555 4.8967 52 1 9.0528 -0.0901 3.7362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042060923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:48 Heat of formation + Delta-G solvation = 55.196721 kcal Electronic energy + Delta-G solvation = -31362.873706 eV Core-core repulsion = 27364.139098 eV Total energy + Delta-G solvation = -3998.734608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 19.91 seconds Orbital eigenvalues (eV) -42.59588 -40.01675 -38.20227 -36.71149 -35.63923 -33.18090 -32.82617 -31.37022 -30.95697 -29.43548 -28.56980 -27.53273 -27.16897 -24.86493 -24.21898 -22.58420 -22.16487 -21.54427 -20.91779 -20.06246 -19.69838 -19.37558 -17.72705 -16.80405 -16.54743 -15.84381 -15.82729 -15.41395 -14.85616 -14.82747 -14.48306 -14.40006 -14.11881 -14.09927 -13.81104 -13.65670 -13.35728 -13.09675 -12.81629 -12.72861 -12.66416 -12.37329 -12.31148 -11.95854 -11.60789 -11.47437 -11.41167 -11.32721 -11.07832 -11.05760 -10.87996 -10.77585 -10.45687 -10.29277 -10.21275 -10.04137 -9.93470 -9.89429 -9.68499 -9.55496 -8.76074 -8.65022 -8.47635 -6.89598 -5.74601 -3.08741 1.22998 2.50734 2.68408 2.93639 3.31858 3.41440 3.45639 3.47235 4.00308 4.33282 4.41136 4.47405 4.52208 4.61023 4.71782 4.81485 4.88554 4.98352 5.12327 5.16508 5.21698 5.27145 5.28974 5.33604 5.36864 5.49085 5.53258 5.57369 5.58199 5.65258 5.66715 5.76017 5.82210 5.91096 5.91484 5.96128 6.00147 6.01697 6.08221 6.29392 6.35694 6.41520 6.47894 6.61078 6.65918 6.93859 6.97824 7.36803 7.51363 7.56185 7.74151 7.77920 8.14047 8.20248 9.15963 9.78847 10.44917 11.37582 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.002447 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.922619 B =11439.290651 C =12296.028991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.034 4.034 5 C 0.234 3.766 6 N -0.489 5.489 7 C 0.063 3.937 8 C -0.077 4.077 9 C 0.589 3.411 10 O -0.523 6.523 11 N -0.602 5.602 12 C 0.090 3.910 13 C -0.117 4.117 14 C -0.113 4.113 15 H 0.078 0.922 16 C -0.137 4.137 17 C 0.177 3.823 18 N -0.591 5.591 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.005 4.005 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.156 3.844 28 H 0.025 0.975 29 C 0.117 3.883 30 N -0.554 5.554 31 H 0.424 0.576 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.182 0.818 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.038 0.962 49 H 0.057 0.943 50 H 0.253 0.747 51 H 0.072 0.928 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.274 1.243 -9.771 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.073 4.073 5 C -0.030 4.030 6 N -0.209 5.209 7 C -0.090 4.090 8 C -0.192 4.192 9 C 0.375 3.625 10 O -0.399 6.399 11 N -0.335 5.335 12 C -0.034 4.034 13 C -0.155 4.155 14 C -0.133 4.133 15 H 0.096 0.904 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.316 5.316 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.047 3.953 28 H 0.042 0.958 29 C -0.004 4.004 30 N -0.164 5.164 31 H 0.268 0.732 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.199 0.801 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.056 0.944 49 H 0.075 0.925 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.757 1.038 -10.667 26.063 hybrid contribution 1.212 0.884 1.130 1.878 sum -22.545 1.922 -9.537 24.554 Atomic orbital electron populations 1.21844 0.94598 1.02012 1.02024 1.21068 0.95558 0.96282 0.97909 1.21866 1.01250 0.95734 1.01738 1.20227 0.84494 1.02774 0.99773 1.23377 0.94698 0.98393 0.86514 1.70120 1.03793 1.21443 1.25556 1.22609 0.93816 0.99405 0.93156 1.21189 0.84354 1.13907 0.99769 1.16989 0.86450 0.77318 0.81716 1.90862 1.32959 1.50151 1.65907 1.48210 1.10190 1.69978 1.05124 1.22157 0.86430 0.99976 0.94847 1.21770 0.99177 0.98838 0.95753 1.22264 0.94497 0.99862 0.96645 0.90383 1.22724 0.99752 0.98161 0.96933 1.21557 0.87268 0.97944 0.87984 1.44154 1.07971 1.71673 1.07814 1.18999 0.86854 1.33239 0.96765 0.90276 1.24789 0.98386 1.01150 0.95861 1.69929 1.32821 1.51117 1.03002 0.86210 0.83655 0.78962 0.77039 1.21078 1.21618 1.21040 1.20987 0.88164 0.95483 0.90652 0.95803 1.21811 0.83974 0.99281 0.95371 1.44033 1.06132 1.46774 1.19457 0.73226 0.92656 0.92306 0.92367 0.89497 0.92895 0.92768 0.92413 0.88689 0.90237 0.80091 0.90304 0.91473 0.91163 0.90737 0.92525 0.92182 0.94374 0.92524 0.93672 0.90928 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.09 -0.56 2.89 -90.62 -0.26 -0.82 16 3 C -0.15 -1.01 9.01 37.16 0.33 -0.67 16 4 C -0.03 -0.20 5.32 -27.89 -0.15 -0.35 16 5 C 0.23 2.22 6.38 -155.62 -0.99 1.23 16 6 N -0.49 -5.99 11.09 -10.59 -0.12 -6.11 16 7 C 0.06 0.83 11.76 -17.47 -0.21 0.63 16 8 C -0.08 -1.00 6.36 -82.14 -0.52 -1.53 16 9 C 0.59 9.47 7.62 -12.82 -0.10 9.37 16 10 O -0.52 -10.38 16.37 5.21 0.09 -10.29 16 11 N -0.60 -9.05 3.01 -174.24 -0.52 -9.57 16 12 C 0.09 0.98 5.31 -3.52 -0.02 0.96 16 13 C -0.12 -1.40 5.72 -26.79 -0.15 -1.56 16 14 C -0.11 -1.82 2.61 -89.51 -0.23 -2.05 16 15 H 0.08 1.29 8.13 -51.93 -0.42 0.86 16 16 C -0.14 -2.41 6.54 -25.15 -0.16 -2.58 16 17 C 0.18 4.15 5.46 -1.91 -0.01 4.14 16 18 N -0.59 -14.66 3.35 -162.90 -0.55 -15.20 16 19 C -0.23 -6.32 9.88 -15.06 -0.15 -6.47 16 20 H 0.08 2.12 7.41 -52.49 -0.39 1.74 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 22 N -0.92 -26.73 10.43 55.49 0.58 -26.15 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.16 3.14 2.75 -67.82 -0.19 2.95 16 28 H 0.02 0.53 7.93 -51.93 -0.41 0.12 16 29 C 0.12 2.18 5.69 -3.95 -0.02 2.15 16 30 N -0.55 -5.25 4.80 -7.02 -0.03 -5.28 16 31 H 0.42 2.93 6.43 -40.82 -0.26 2.67 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.48 7.38 -51.93 -0.38 0.10 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.08 0.71 3.97 -51.93 -0.21 0.51 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 49 H 0.06 1.47 7.19 -51.93 -0.37 1.10 16 50 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 51 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 52 H 0.10 2.01 6.76 -51.93 -0.35 1.66 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -32.94 400.96 -10.79 -43.73 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.67 Total: 0.82 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.59 Total: 4.82 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.64 Total: -62.32 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.94 -10.79 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042060923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.923 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.91 seconds