Wall clock time and date at job start Wed Apr 1 2020 04:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47180 * 2 1 4 4 C 1.50702 * 109.47149 * 180.02562 * 3 2 1 5 5 C 1.38040 * 126.29267 * 270.00714 * 4 3 2 6 6 C 1.47429 * 126.41540 * 0.02562 * 5 4 3 7 7 O 1.21601 * 119.99870 * 335.58540 * 6 5 4 8 8 N 1.34778 * 119.99815 * 155.58061 * 6 5 4 9 9 C 1.47152 * 121.21153 * 173.31576 * 8 6 5 10 10 C 1.52834 * 107.97947 * 122.69458 * 9 8 6 11 11 C 1.53095 * 110.54158 * 57.37132 * 10 9 8 12 12 H 1.09001 * 112.49211 * 70.52221 * 11 10 9 13 13 C 1.56109 * 106.35639 * 195.42284 * 11 10 9 14 14 C 1.54503 * 102.62151 * 78.36661 * 13 11 10 15 15 N 1.47440 * 107.14888 * 22.83828 * 14 13 11 16 16 C 1.36937 * 126.05913 * 181.64215 * 15 14 13 17 17 H 1.08004 * 119.99552 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00191 * 359.97438 * 16 15 14 19 19 N 1.31621 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99719 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47345 * 60.00109 * 20 18 16 22 22 H 1.48506 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47157 * 299.99824 * 20 18 16 24 24 C 1.46467 * 107.87719 * 1.62912 * 15 14 13 25 25 H 1.08995 * 108.42384 * 89.23496 * 24 15 14 26 26 C 1.46749 * 121.21481 * 353.29446 * 8 6 5 27 27 C 1.41292 * 107.17105 * 179.75728 * 5 4 3 28 28 N 1.30446 * 108.02089 * 0.23683 * 27 5 4 29 29 N 1.34263 * 126.29172 * 90.17652 * 4 3 2 30 30 C 1.46503 * 125.75188 * 359.96269 * 29 4 3 31 31 H 1.09008 * 109.46522 * 299.99943 * 1 2 3 32 32 H 1.08995 * 109.47064 * 59.99306 * 1 2 3 33 33 H 1.08995 * 109.47697 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46565 * 239.99830 * 2 1 3 35 35 H 1.09002 * 109.46813 * 120.00381 * 2 1 3 36 36 H 1.08999 * 109.47510 * 60.00409 * 3 2 1 37 37 H 1.09002 * 109.47558 * 299.99924 * 3 2 1 38 38 H 1.09000 * 109.76077 * 3.07538 * 9 8 6 39 39 H 1.09001 * 109.80753 * 242.34073 * 9 8 6 40 40 H 1.08997 * 109.26160 * 177.63421 * 10 9 8 41 41 H 1.09002 * 109.25678 * 297.11097 * 10 9 8 42 42 H 1.09004 * 110.78103 * 320.08604 * 13 11 10 43 43 H 1.08998 * 110.93995 * 196.72103 * 13 11 10 44 44 H 1.09001 * 109.90693 * 263.45787 * 14 13 11 45 45 H 1.09000 * 110.05541 * 142.30463 * 14 13 11 46 46 H 0.96998 * 119.99497 * 180.02562 * 19 18 16 47 47 H 1.08996 * 109.23172 * 352.85729 * 26 8 6 48 48 H 1.09003 * 109.22550 * 112.21685 * 26 8 6 49 49 H 1.08002 * 125.98907 * 180.23960 * 27 5 4 50 50 H 1.09002 * 109.47140 * 270.30770 * 30 29 4 51 51 H 1.09004 * 109.47251 * 30.31165 * 30 29 4 52 52 H 1.08999 * 109.46963 * 150.30623 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3646 1.4421 1.1116 6 6 3.9270 1.4412 2.5195 7 8 2.8306 1.8760 2.8156 8 7 4.7420 0.9584 3.4782 9 6 4.3961 1.0763 4.9036 10 6 4.3745 -0.3300 5.5016 11 6 5.7255 -1.0209 5.2988 12 1 6.5123 -0.5876 5.9163 13 6 5.4872 -2.5401 5.5674 14 6 4.8244 -3.0151 4.2551 15 7 5.2092 -2.0573 3.2023 16 6 4.8081 -2.0940 1.8935 17 1 5.1511 -1.3384 1.2022 18 6 3.9607 -3.1024 1.4552 19 7 3.5431 -4.0235 2.2976 20 14 3.4130 -3.1519 -0.3300 21 1 4.6030 -3.2758 -1.2096 22 1 2.5185 -4.3183 -0.5412 23 1 2.6826 -1.9014 -0.6585 24 6 6.0963 -1.0595 3.8045 25 1 7.1226 -1.4177 3.7241 26 6 6.0065 0.2957 3.1386 27 6 5.6993 1.4365 0.6482 28 7 5.6738 1.4388 -0.6560 29 7 4.3413 1.4459 -1.0831 30 6 3.8890 1.4497 -2.4766 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 3.4133 1.5361 5.0075 39 1 5.1427 1.6831 5.4159 40 1 4.1612 -0.2638 6.5685 41 1 3.5946 -0.9157 5.0149 42 1 4.8150 -2.6824 6.4137 43 1 6.4311 -3.0591 5.7338 44 1 3.7404 -3.0253 4.3693 45 1 5.1794 -4.0128 3.9969 46 1 2.9513 -4.7283 1.9912 47 1 6.0666 0.1692 2.0576 48 1 6.8381 0.9159 3.4734 49 1 6.5855 1.4312 1.2656 50 1 3.7722 0.4229 -2.8234 51 1 2.9327 1.9680 -2.5469 52 1 4.6258 1.9609 -3.0963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042131451.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:07 Heat of formation + Delta-G solvation = 80.650494 kcal Electronic energy + Delta-G solvation = -34127.467083 eV Core-core repulsion = 30129.836233 eV Total energy + Delta-G solvation = -3997.630850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.29164 -39.54788 -37.76813 -35.18959 -34.51766 -33.42974 -32.66863 -31.22245 -30.30057 -28.99240 -28.51253 -26.95400 -26.29965 -24.58705 -24.02290 -22.62021 -21.69498 -21.39823 -20.36094 -19.83267 -19.19842 -18.06735 -16.99880 -16.36901 -15.89442 -15.48029 -15.32862 -14.97922 -14.70487 -14.41732 -14.23464 -14.06705 -13.82885 -13.58844 -13.32220 -13.05886 -12.96111 -12.74211 -12.45017 -12.40351 -12.24732 -11.99591 -11.90539 -11.55926 -11.46003 -11.38133 -11.17194 -11.04389 -10.82281 -10.75617 -10.64025 -10.38400 -10.22663 -9.95631 -9.78247 -9.71823 -9.59081 -9.47443 -9.24508 -8.97908 -8.47695 -8.24844 -7.91768 -6.74665 -5.64111 -2.95621 1.91000 2.55350 2.58983 3.36826 3.44506 3.46664 3.53058 4.01962 4.54047 4.62298 4.73479 5.07359 5.09372 5.13426 5.18541 5.29415 5.34279 5.40064 5.41396 5.50562 5.56645 5.57682 5.63778 5.69191 5.79311 5.83464 5.85435 5.88878 6.01876 6.02104 6.05245 6.08231 6.17023 6.24940 6.30398 6.35214 6.36065 6.44629 6.57410 6.61910 6.67620 6.73374 6.76664 6.78798 7.07876 7.11708 7.17974 7.62127 7.67293 7.84614 7.88493 8.07406 8.30873 8.85506 9.27598 9.89998 10.56472 11.47940 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.006228 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.766512 B = 4494.517319 C = 5520.010309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.064 4.064 4 C 0.161 3.839 5 C -0.274 4.274 6 C 0.612 3.388 7 O -0.562 6.562 8 N -0.589 5.589 9 C 0.119 3.881 10 C -0.121 4.121 11 C -0.102 4.102 12 H 0.074 0.926 13 C -0.143 4.143 14 C 0.179 3.821 15 N -0.587 5.587 16 C -0.209 4.209 17 H 0.074 0.926 18 C -0.003 4.003 19 N -0.922 5.922 20 Si 0.874 3.126 21 H -0.293 1.293 22 H -0.295 1.295 23 H -0.253 1.253 24 C 0.154 3.846 25 H 0.026 0.974 26 C 0.092 3.908 27 C 0.077 3.923 28 N -0.303 5.303 29 N -0.365 5.365 30 C 0.098 3.902 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.045 0.955 45 H 0.040 0.960 46 H 0.249 0.751 47 H 0.102 0.898 48 H 0.056 0.944 49 H 0.192 0.808 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 11.152 -1.291 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.103 4.103 4 C 0.029 3.971 5 C -0.288 4.288 6 C 0.402 3.598 7 O -0.442 6.442 8 N -0.321 5.321 9 C -0.004 4.004 10 C -0.159 4.159 11 C -0.121 4.121 12 H 0.093 0.907 13 C -0.181 4.181 14 C 0.055 3.945 15 N -0.312 5.312 16 C -0.338 4.338 17 H 0.092 0.908 18 C -0.199 4.199 19 N -0.570 5.570 20 Si 0.705 3.295 21 H -0.220 1.220 22 H -0.222 1.222 23 H -0.179 1.179 24 C 0.045 3.955 25 H 0.043 0.957 26 C -0.032 4.032 27 C -0.109 4.109 28 N -0.122 5.122 29 N -0.144 5.144 30 C -0.043 4.043 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.120 0.880 48 H 0.074 0.926 49 H 0.209 0.791 50 H 0.094 0.906 51 H 0.105 0.895 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.922 11.230 -2.528 11.548 hybrid contribution -0.523 -0.547 -0.276 0.806 sum 0.399 10.682 -2.805 11.052 Atomic orbital electron populations 1.21708 0.95610 1.01701 1.01273 1.21856 0.95716 0.94549 1.04106 1.20559 0.86120 0.99370 1.04277 1.21373 0.94406 0.95130 0.86183 1.19808 0.92619 1.22866 0.93558 1.17015 0.83157 0.76111 0.83504 1.90644 1.20805 1.50049 1.82750 1.47515 1.21896 1.56928 1.05716 1.21456 1.01284 0.97169 0.80459 1.21818 0.98715 0.95897 0.99511 1.22404 0.96498 0.96149 0.97095 0.90731 1.23157 1.00098 0.94936 0.99949 1.21201 0.97529 0.92467 0.83339 1.44230 1.54512 1.26356 1.06092 1.18810 1.22811 1.08520 0.83640 0.90808 1.24631 1.00208 0.97815 0.97219 1.69936 1.38251 1.16055 1.32754 0.86890 0.78622 0.78282 0.85681 1.21998 1.22166 1.17878 1.20681 0.94526 0.89208 0.91042 0.95719 1.22031 0.84471 0.93658 1.03016 1.24195 0.97440 0.97476 0.91824 1.77108 0.96024 1.25772 1.13299 1.48176 1.04108 1.56129 1.06033 1.21877 1.00867 1.03673 0.77885 0.92441 0.93365 0.92632 0.91328 0.89934 0.87181 0.91378 0.89664 0.92316 0.92313 0.90164 0.92385 0.92852 0.93731 0.94179 0.94053 0.88027 0.92585 0.79133 0.90563 0.89493 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.14 4.91 -26.73 -0.13 -2.27 16 3 C -0.06 -1.00 5.16 -27.88 -0.14 -1.15 16 4 C 0.16 2.79 6.25 -81.60 -0.51 2.28 16 5 C -0.27 -5.10 5.64 -105.07 -0.59 -5.70 16 6 C 0.61 12.13 7.61 -12.52 -0.10 12.04 16 7 O -0.56 -12.14 14.58 5.28 0.08 -12.06 16 8 N -0.59 -10.64 2.97 -175.37 -0.52 -11.16 16 9 C 0.12 1.91 6.44 -3.77 -0.02 1.89 16 10 C -0.12 -2.02 5.04 -26.77 -0.13 -2.16 16 11 C -0.10 -1.69 3.68 -88.38 -0.33 -2.02 16 12 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.14 -2.60 6.33 -24.28 -0.15 -2.75 16 14 C 0.18 4.23 4.62 -2.74 -0.01 4.22 16 15 N -0.59 -13.99 3.20 -164.41 -0.53 -14.51 16 16 C -0.21 -5.51 9.70 -15.06 -0.15 -5.66 16 17 H 0.07 1.94 6.39 -52.48 -0.34 1.61 16 18 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 19 N -0.92 -26.77 10.38 55.49 0.58 -26.19 16 20 Si 0.87 21.25 29.49 -169.99 -5.01 16.24 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 23 H -0.25 -5.54 3.35 56.52 0.19 -5.35 16 24 C 0.15 2.95 2.97 -68.30 -0.20 2.75 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 C 0.09 1.58 4.41 -4.78 -0.02 1.56 16 27 C 0.08 1.32 9.59 -16.98 -0.16 1.16 16 28 N -0.30 -5.26 12.50 30.86 0.39 -4.87 16 29 N -0.36 -5.85 3.98 -63.34 -0.25 -6.10 16 30 C 0.10 1.10 11.24 59.85 0.67 1.77 16 31 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.20 5.91 -51.93 -0.31 0.90 16 35 H 0.08 1.77 8.02 -51.93 -0.42 1.36 16 36 H 0.11 1.87 6.38 -51.93 -0.33 1.54 16 37 H 0.07 0.83 7.05 -51.93 -0.37 0.47 16 38 H 0.08 1.45 7.06 -51.93 -0.37 1.08 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.68 6.85 -51.93 -0.36 1.32 16 42 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 1.19 7.04 -51.93 -0.37 0.82 16 45 H 0.04 1.06 7.56 -51.93 -0.39 0.67 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.10 1.87 2.47 -51.93 -0.13 1.74 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.19 2.76 6.05 -52.49 -0.32 2.44 16 50 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.09 0.75 7.02 -51.93 -0.36 0.38 16 52 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -32.66 387.29 -9.61 -42.27 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.46 Total: 6.48 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.71 Total: 4.07 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.34 Total: -62.84 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.01 Total: 16.24 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.66 -9.61 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042131451.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.920 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds