Wall clock time and date at job start Wed Apr 1 2020 04:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47353 * 2 1 4 4 C 1.50702 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.38045 * 126.28692 * 269.99783 * 4 3 2 6 6 C 1.47420 * 126.41827 * 359.97438 * 5 4 3 7 7 O 1.21605 * 119.99983 * 49.59750 * 6 5 4 8 8 N 1.34785 * 119.99902 * 229.59601 * 6 5 4 9 9 C 1.46586 * 119.75163 * 355.73690 * 8 6 5 10 10 C 1.53888 * 110.70747 * 132.25370 * 9 8 6 11 11 C 1.51975 * 107.29423 * 51.80851 * 10 9 8 12 12 H 1.09003 * 111.01212 * 56.52237 * 11 10 9 13 13 C 1.53698 * 115.00780 * 184.55640 * 11 10 9 14 14 C 1.55299 * 101.81589 * 153.46793 * 13 11 10 15 15 N 1.48154 * 107.04036 * 337.55330 * 14 13 11 16 16 C 1.36939 * 126.39829 * 174.95554 * 15 14 13 17 17 H 1.07996 * 120.00178 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99666 * 0.05019 * 16 15 14 19 19 N 1.31623 * 120.00500 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99937 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47295 * 89.99669 * 20 18 16 22 22 H 1.48501 * 109.47307 * 210.00170 * 20 18 16 23 23 H 1.48502 * 109.46938 * 329.99469 * 20 18 16 24 24 C 1.45508 * 107.20683 * 354.99757 * 15 14 13 25 25 H 1.08997 * 109.56827 * 273.37317 * 24 15 14 26 26 C 1.47799 * 119.75037 * 175.45489 * 8 6 5 27 27 C 1.41295 * 107.16586 * 180.24550 * 5 4 3 28 28 N 1.30450 * 108.02638 * 359.61671 * 27 5 4 29 29 N 1.34256 * 126.29524 * 90.01992 * 4 3 2 30 30 C 1.46505 * 125.75037 * 359.96286 * 29 4 3 31 31 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47272 * 300.00209 * 1 2 3 33 33 H 1.09008 * 109.46769 * 60.00493 * 1 2 3 34 34 H 1.09002 * 109.47436 * 239.99250 * 2 1 3 35 35 H 1.09000 * 109.47101 * 120.00064 * 2 1 3 36 36 H 1.09000 * 109.47413 * 59.99809 * 3 2 1 37 37 H 1.09006 * 109.47265 * 299.99697 * 3 2 1 38 38 H 1.09006 * 109.22917 * 252.56262 * 9 8 6 39 39 H 1.08997 * 109.23440 * 11.97286 * 9 8 6 40 40 H 1.09003 * 109.89418 * 171.26039 * 10 9 8 41 41 H 1.08999 * 109.89126 * 292.28726 * 10 9 8 42 42 H 1.08999 * 110.96136 * 271.60569 * 13 11 10 43 43 H 1.09003 * 110.96044 * 35.33746 * 13 11 10 44 44 H 1.09000 * 109.91688 * 218.20764 * 14 13 11 45 45 H 1.08999 * 110.08601 * 96.99697 * 14 13 11 46 46 H 0.96993 * 120.00566 * 179.97438 * 19 18 16 47 47 H 1.08998 * 110.06418 * 350.48478 * 26 8 6 48 48 H 1.09005 * 110.05645 * 112.03953 * 26 8 6 49 49 H 1.08001 * 125.98431 * 179.73677 * 27 5 4 50 50 H 1.09000 * 109.47134 * 89.99873 * 30 29 4 51 51 H 1.09002 * 109.46753 * 209.99292 * 30 29 4 52 52 H 1.08995 * 109.47192 * 329.99474 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3645 1.4422 1.1118 6 6 3.9268 1.4426 2.5195 7 8 3.0942 0.6410 2.8976 8 7 4.4496 2.3314 3.3875 9 6 5.5197 3.2326 2.9498 10 6 5.2180 4.6812 3.3723 11 6 4.9111 4.6632 4.8607 12 1 5.7346 4.2245 5.4242 13 6 4.4749 6.0138 5.4506 14 6 3.6135 5.5677 6.6634 15 7 3.1604 4.1842 6.3886 16 6 2.4571 3.3751 7.2407 17 1 2.1788 2.3783 6.9324 18 6 2.1015 3.8366 8.5007 19 7 2.4407 5.0516 8.8766 20 14 1.1416 2.7333 9.6629 21 1 2.0882 1.9445 10.4916 22 1 0.2877 3.5680 10.5457 23 1 0.2855 1.8103 8.8752 24 6 3.6029 3.8452 5.0446 25 1 2.8596 4.1787 4.3205 26 6 3.9352 2.3944 4.7717 27 6 5.6993 1.4481 0.6484 28 7 5.6738 1.4431 -0.6559 29 7 4.3413 1.4429 -1.0830 30 6 3.8891 1.4428 -2.4766 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9563 -0.8901 38 1 6.4613 2.9165 3.3989 39 1 5.6064 3.1865 1.8643 40 1 6.0859 5.3121 3.1802 41 1 4.3570 5.0571 2.8196 42 1 5.3381 6.5935 5.7775 43 1 3.8773 6.5774 4.7341 44 1 2.7517 6.2267 6.7691 45 1 4.2110 5.5887 7.5748 46 1 2.1919 5.3742 9.7568 47 1 3.0380 1.7825 4.8654 48 1 4.6983 2.0507 5.4701 49 1 6.5853 1.4535 1.2658 50 1 3.7764 2.4705 -2.8220 51 1 4.6238 0.9295 -3.0969 52 1 2.9308 0.9285 -2.5475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042131452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:11 Heat of formation + Delta-G solvation = 66.658959 kcal Electronic energy + Delta-G solvation = -31990.445145 eV Core-core repulsion = 27992.207576 eV Total energy + Delta-G solvation = -3998.237569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.70431 -39.75625 -37.96137 -35.61828 -35.10327 -33.50525 -32.80663 -31.24943 -30.85356 -29.48336 -28.51483 -27.16877 -26.70868 -24.69344 -23.95241 -22.26906 -22.10562 -21.68652 -20.63024 -19.97828 -19.50822 -18.64234 -17.32761 -16.54566 -16.23300 -15.78609 -15.62962 -15.06059 -14.86919 -14.74575 -14.48048 -14.26401 -13.94910 -13.77199 -13.60436 -13.44404 -13.11381 -12.96839 -12.88969 -12.81188 -12.51068 -12.32472 -12.13060 -11.84834 -11.64693 -11.45696 -11.44964 -11.25001 -11.04373 -10.89421 -10.81706 -10.74564 -10.70208 -10.12033 -9.92381 -9.83981 -9.66779 -9.56743 -9.50593 -9.41911 -8.64087 -8.59165 -8.27695 -6.81702 -5.68394 -3.01914 1.48243 2.15418 2.20477 3.06988 3.44133 3.44475 3.49932 3.52087 4.22523 4.26361 4.54383 4.63058 4.75282 4.79302 4.85118 4.93108 5.02609 5.04534 5.10351 5.13518 5.20279 5.28152 5.39381 5.45422 5.52467 5.59730 5.60719 5.67969 5.69360 5.76110 5.83863 5.88811 6.00144 6.07639 6.09250 6.13664 6.19105 6.20810 6.23287 6.27967 6.44866 6.56281 6.61913 6.66077 6.78972 6.84648 7.11709 7.40581 7.58984 7.63553 7.73152 7.84976 8.26853 8.49526 9.22782 9.85820 10.52723 11.43963 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003213 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.854544 B = 8712.235886 C =10105.385990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.060 4.060 4 C 0.145 3.855 5 C -0.279 4.279 6 C 0.591 3.409 7 O -0.540 6.540 8 N -0.599 5.599 9 C 0.105 3.895 10 C -0.119 4.119 11 C -0.112 4.112 12 H 0.077 0.923 13 C -0.137 4.137 14 C 0.177 3.823 15 N -0.592 5.592 16 C -0.226 4.226 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.157 3.843 25 H 0.022 0.978 26 C 0.118 3.882 27 C 0.080 3.920 28 N -0.300 5.300 29 N -0.364 5.364 30 C 0.097 3.903 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.252 0.748 47 H 0.091 0.909 48 H 0.069 0.931 49 H 0.190 0.810 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 -4.040 -22.761 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.099 4.099 4 C 0.013 3.987 5 C -0.294 4.294 6 C 0.378 3.622 7 O -0.417 6.417 8 N -0.332 5.332 9 C -0.018 4.018 10 C -0.158 4.158 11 C -0.132 4.132 12 H 0.095 0.905 13 C -0.176 4.176 14 C 0.053 3.947 15 N -0.317 5.317 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.048 3.952 25 H 0.039 0.961 26 C -0.004 4.004 27 C -0.106 4.106 28 N -0.119 5.119 29 N -0.144 5.144 30 C -0.044 4.044 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.110 0.890 48 H 0.087 0.913 49 H 0.206 0.794 50 H 0.096 0.904 51 H 0.111 0.889 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.848 -4.452 -23.539 24.442 hybrid contribution -0.774 -0.361 1.368 1.613 sum 4.074 -4.813 -22.171 23.050 Atomic orbital electron populations 1.21744 0.95036 1.01980 1.01984 1.21473 0.96215 0.94746 1.03059 1.20410 0.85977 0.99318 1.04161 1.21361 0.94358 0.96749 0.86188 1.20013 0.93080 1.22599 0.93728 1.17321 0.80743 0.80491 0.83667 1.90760 1.33694 1.38666 1.78608 1.48112 1.37559 1.35445 1.12119 1.21868 0.89709 0.90120 1.00136 1.21796 1.01768 0.95257 0.96930 1.22259 0.98876 0.98014 0.94016 0.90457 1.22713 0.99644 0.95660 0.99552 1.21539 0.95388 0.84742 0.93018 1.44176 1.63736 1.12653 1.11139 1.19054 1.26792 0.95630 0.93986 0.90240 1.24777 1.01122 0.96781 0.97619 1.69942 1.50936 1.16120 1.19974 0.86152 0.79517 0.79450 0.80916 1.21595 1.21750 1.20577 1.20879 0.92939 0.92116 0.89280 0.96064 1.21620 1.00109 0.99158 0.79480 1.23998 0.97088 0.97797 0.91755 1.77151 0.96047 1.25540 1.13172 1.48225 1.03941 1.56100 1.06132 1.21929 1.01227 1.03692 0.77552 0.92432 0.92024 0.93011 0.92641 0.89831 0.88572 0.90600 0.91818 0.89834 0.91044 0.91621 0.92279 0.92624 0.94533 0.92604 0.93806 0.89022 0.91266 0.79359 0.90391 0.88944 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.17 5.92 -26.74 -0.16 -1.33 16 3 C -0.06 -0.61 4.94 -27.89 -0.14 -0.75 16 4 C 0.14 1.72 6.26 -81.60 -0.51 1.21 16 5 C -0.28 -3.81 5.06 -105.07 -0.53 -4.34 16 6 C 0.59 9.73 7.18 -12.52 -0.09 9.64 16 7 O -0.54 -10.60 15.93 5.27 0.08 -10.51 16 8 N -0.60 -9.55 3.02 -174.28 -0.53 -10.08 16 9 C 0.11 1.32 5.62 -3.53 -0.02 1.30 16 10 C -0.12 -1.58 5.72 -26.79 -0.15 -1.74 16 11 C -0.11 -1.91 2.62 -89.52 -0.23 -2.15 16 12 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 13 C -0.14 -2.51 6.54 -25.15 -0.16 -2.67 16 14 C 0.18 4.26 5.46 -1.91 -0.01 4.25 16 15 N -0.59 -14.94 3.35 -163.17 -0.55 -15.49 16 16 C -0.23 -6.28 9.88 -15.06 -0.15 -6.43 16 17 H 0.08 2.16 7.41 -52.49 -0.39 1.77 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -27.06 10.43 55.49 0.58 -26.48 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.16 3.23 2.74 -68.05 -0.19 3.05 16 25 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 26 C 0.12 2.28 5.64 -4.18 -0.02 2.25 16 27 C 0.08 0.95 9.63 -16.98 -0.16 0.79 16 28 N -0.30 -3.62 12.50 30.86 0.39 -3.24 16 29 N -0.36 -3.83 3.98 -63.34 -0.25 -4.09 16 30 C 0.10 0.58 11.06 59.85 0.66 1.24 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 1.09 7.67 -51.93 -0.40 0.69 16 36 H 0.10 1.17 7.96 -51.93 -0.41 0.76 16 37 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.94 4.67 -51.93 -0.24 0.70 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.92 7.99 -51.93 -0.41 0.50 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 44 H 0.04 0.97 7.77 -51.93 -0.40 0.56 16 45 H 0.06 1.48 7.19 -51.93 -0.37 1.11 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.09 1.98 6.79 -51.93 -0.35 1.62 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.19 1.75 7.61 -52.49 -0.40 1.35 16 50 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.09 0.37 7.62 -51.93 -0.40 -0.03 16 LS Contribution 404.03 15.07 6.09 6.09 Total: -1.00 -33.65 404.03 -9.61 -43.26 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.80 Total: 0.08 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.60 Total: 3.09 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.36 Total: -59.37 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.65 -9.61 -43.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042131452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.922 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds