Wall clock time and date at job start Wed Apr 1 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47353 * 2 1 4 4 C 1.50702 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.38045 * 126.28692 * 269.99783 * 4 3 2 6 6 C 1.47420 * 126.41827 * 359.97438 * 5 4 3 7 7 O 1.21605 * 119.99983 * 49.59750 * 6 5 4 8 8 N 1.34785 * 119.99902 * 229.59601 * 6 5 4 9 9 C 1.46586 * 119.75163 * 355.73690 * 8 6 5 10 10 C 1.53888 * 110.70747 * 132.25370 * 9 8 6 11 11 C 1.51975 * 107.29423 * 51.80851 * 10 9 8 12 12 H 1.09003 * 111.01212 * 56.52237 * 11 10 9 13 13 C 1.53698 * 115.00780 * 184.55640 * 11 10 9 14 14 C 1.55299 * 101.81589 * 153.46793 * 13 11 10 15 15 N 1.48154 * 107.04036 * 337.55330 * 14 13 11 16 16 C 1.36939 * 126.39829 * 174.95554 * 15 14 13 17 17 H 1.07996 * 120.00178 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99666 * 0.05019 * 16 15 14 19 19 N 1.31623 * 120.00500 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99937 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47295 * 89.99669 * 20 18 16 22 22 H 1.48501 * 109.47307 * 210.00170 * 20 18 16 23 23 H 1.48502 * 109.46938 * 329.99469 * 20 18 16 24 24 C 1.45508 * 107.20683 * 354.99757 * 15 14 13 25 25 H 1.08997 * 109.56827 * 273.37317 * 24 15 14 26 26 C 1.47799 * 119.75037 * 175.45489 * 8 6 5 27 27 C 1.41295 * 107.16586 * 180.24550 * 5 4 3 28 28 N 1.30450 * 108.02638 * 359.61671 * 27 5 4 29 29 N 1.34256 * 126.29524 * 90.01992 * 4 3 2 30 30 C 1.46505 * 125.75037 * 359.96286 * 29 4 3 31 31 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47272 * 300.00209 * 1 2 3 33 33 H 1.09008 * 109.46769 * 60.00493 * 1 2 3 34 34 H 1.09002 * 109.47436 * 239.99250 * 2 1 3 35 35 H 1.09000 * 109.47101 * 120.00064 * 2 1 3 36 36 H 1.09000 * 109.47413 * 59.99809 * 3 2 1 37 37 H 1.09006 * 109.47265 * 299.99697 * 3 2 1 38 38 H 1.09006 * 109.22917 * 252.56262 * 9 8 6 39 39 H 1.08997 * 109.23440 * 11.97286 * 9 8 6 40 40 H 1.09003 * 109.89418 * 171.26039 * 10 9 8 41 41 H 1.08999 * 109.89126 * 292.28726 * 10 9 8 42 42 H 1.08999 * 110.96136 * 271.60569 * 13 11 10 43 43 H 1.09003 * 110.96044 * 35.33746 * 13 11 10 44 44 H 1.09000 * 109.91688 * 218.20764 * 14 13 11 45 45 H 1.08999 * 110.08601 * 96.99697 * 14 13 11 46 46 H 0.96993 * 120.00566 * 179.97438 * 19 18 16 47 47 H 1.08998 * 110.06418 * 350.48478 * 26 8 6 48 48 H 1.09005 * 110.05645 * 112.03953 * 26 8 6 49 49 H 1.08001 * 125.98431 * 179.73677 * 27 5 4 50 50 H 1.09000 * 109.47134 * 89.99873 * 30 29 4 51 51 H 1.09002 * 109.46753 * 209.99292 * 30 29 4 52 52 H 1.08995 * 109.47192 * 329.99474 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3645 1.4422 1.1118 6 6 3.9268 1.4426 2.5195 7 8 3.0942 0.6410 2.8976 8 7 4.4496 2.3314 3.3875 9 6 5.5197 3.2326 2.9498 10 6 5.2180 4.6812 3.3723 11 6 4.9111 4.6632 4.8607 12 1 5.7346 4.2245 5.4242 13 6 4.4749 6.0138 5.4506 14 6 3.6135 5.5677 6.6634 15 7 3.1604 4.1842 6.3886 16 6 2.4571 3.3751 7.2407 17 1 2.1788 2.3783 6.9324 18 6 2.1015 3.8366 8.5007 19 7 2.4407 5.0516 8.8766 20 14 1.1416 2.7333 9.6629 21 1 2.0882 1.9445 10.4916 22 1 0.2877 3.5680 10.5457 23 1 0.2855 1.8103 8.8752 24 6 3.6029 3.8452 5.0446 25 1 2.8596 4.1787 4.3205 26 6 3.9352 2.3944 4.7717 27 6 5.6993 1.4481 0.6484 28 7 5.6738 1.4431 -0.6559 29 7 4.3413 1.4429 -1.0830 30 6 3.8891 1.4428 -2.4766 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9563 -0.8901 38 1 6.4613 2.9165 3.3989 39 1 5.6064 3.1865 1.8643 40 1 6.0859 5.3121 3.1802 41 1 4.3570 5.0571 2.8196 42 1 5.3381 6.5935 5.7775 43 1 3.8773 6.5774 4.7341 44 1 2.7517 6.2267 6.7691 45 1 4.2110 5.5887 7.5748 46 1 2.1919 5.3742 9.7568 47 1 3.0380 1.7825 4.8654 48 1 4.6983 2.0507 5.4701 49 1 6.5853 1.4535 1.2658 50 1 3.7764 2.4705 -2.8220 51 1 4.6238 0.9295 -3.0969 52 1 2.9308 0.9285 -2.5475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042131452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:10 Heat of formation + Delta-G solvation = 45.835935 kcal Electronic energy + Delta-G solvation = -31991.348099 eV Core-core repulsion = 27992.207576 eV Total energy + Delta-G solvation = -3999.140523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.62208 -41.12009 -39.43789 -36.88008 -36.17381 -34.66221 -34.22361 -32.87830 -31.86899 -30.86844 -30.17786 -28.09734 -27.44315 -26.52950 -25.43029 -23.60715 -23.06335 -22.63146 -21.82703 -21.55255 -20.92279 -19.74026 -18.71282 -18.19254 -17.26427 -16.92399 -16.82161 -16.48798 -16.16646 -15.84499 -15.70396 -15.63388 -15.44866 -14.96588 -14.75287 -14.53179 -14.34592 -14.18064 -13.82219 -13.73726 -13.61581 -13.49345 -13.38420 -13.11237 -13.08522 -13.01522 -12.73614 -12.49782 -12.45833 -12.21818 -12.11208 -11.99296 -11.93476 -11.75121 -11.63536 -11.52629 -11.33527 -11.01088 -10.87496 -10.72105 -10.32966 -9.71239 -9.48955 -8.89917 -7.85646 -5.20431 0.57313 1.22396 1.41386 1.44268 1.45309 1.54346 1.84918 2.23653 2.50187 3.32516 3.43749 3.45416 3.52115 3.79496 3.85194 3.94398 4.00054 4.01497 4.06305 4.16882 4.29648 4.33844 4.35883 4.41322 4.42357 4.49147 4.55675 4.59463 4.64290 4.67348 4.72902 4.77829 4.84519 4.87245 4.88791 4.93324 4.96037 5.12325 5.14020 5.16572 5.25481 5.30765 5.37984 5.39903 5.43808 5.52661 5.64484 5.67329 5.79512 5.89401 6.20021 6.47226 6.55017 7.08931 7.22126 7.77285 8.44378 9.25321 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003213 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.854544 B = 8712.235886 C =10105.385990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.057 4.057 4 C 0.147 3.853 5 C -0.307 4.307 6 C 0.589 3.411 7 O -0.584 6.584 8 N -0.598 5.598 9 C 0.102 3.898 10 C -0.109 4.109 11 C -0.095 4.095 12 H 0.078 0.922 13 C -0.121 4.121 14 C 0.181 3.819 15 N -0.613 5.613 16 C -0.236 4.236 17 H 0.075 0.925 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.971 3.029 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.275 1.275 24 C 0.150 3.850 25 H 0.006 0.994 26 C 0.132 3.868 27 C 0.085 3.915 28 N -0.312 5.312 29 N -0.356 5.356 30 C 0.084 3.916 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.068 0.932 44 H -0.001 1.001 45 H 0.024 0.976 46 H 0.247 0.753 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.211 0.789 50 H 0.096 0.904 51 H 0.103 0.897 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.262 -3.909 -26.238 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.096 4.096 4 C 0.014 3.986 5 C -0.322 4.322 6 C 0.378 3.622 7 O -0.464 6.464 8 N -0.330 5.330 9 C -0.019 4.019 10 C -0.147 4.147 11 C -0.115 4.115 12 H 0.096 0.904 13 C -0.159 4.159 14 C 0.057 3.943 15 N -0.338 5.338 16 C -0.365 4.365 17 H 0.093 0.907 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.799 3.201 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.200 1.200 24 C 0.042 3.958 25 H 0.023 0.977 26 C 0.009 3.991 27 C -0.102 4.102 28 N -0.131 5.131 29 N -0.136 5.136 30 C -0.056 4.056 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.042 0.958 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.228 0.772 50 H 0.115 0.885 51 H 0.121 0.879 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.424 -4.313 -27.087 28.170 hybrid contribution -1.306 -0.429 2.352 2.724 sum 5.118 -4.742 -24.734 25.699 Atomic orbital electron populations 1.21729 0.94116 1.02401 1.02231 1.21395 0.96973 0.94439 1.02131 1.20427 0.85215 0.99441 1.04518 1.21526 0.94952 0.95750 0.86365 1.19846 0.94580 1.25536 0.92226 1.17792 0.79870 0.79662 0.84838 1.90735 1.35716 1.40441 1.79524 1.48139 1.38217 1.36131 1.10528 1.22153 0.89209 0.88947 1.01625 1.21782 1.03299 0.96375 0.93278 1.22188 0.96407 0.95897 0.97012 0.90403 1.22588 0.99577 0.96668 0.97095 1.21358 0.94392 0.83868 0.94728 1.44445 1.63713 1.13112 1.12524 1.19312 1.26728 0.95825 0.94636 0.90719 1.25544 1.02572 0.98176 0.99183 1.70145 1.52111 1.17513 1.19964 0.85188 0.78234 0.77798 0.78832 1.21050 1.21802 1.20007 1.20999 0.94517 0.93718 0.86544 0.97682 1.21178 0.98694 0.97515 0.81749 1.24286 0.96927 0.97116 0.91854 1.77126 0.97016 1.25865 1.13129 1.48571 1.03211 1.54470 1.07298 1.22381 1.02547 1.05462 0.75170 0.91983 0.94007 0.90469 0.90539 0.93687 0.91289 0.87063 0.89493 0.87696 0.87078 0.92029 0.89520 0.91290 0.98288 0.95812 0.94366 0.92451 0.91769 0.77220 0.88527 0.87859 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.74 16 2 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 3 C -0.06 -1.10 4.94 29.85 0.15 -0.95 16 4 C 0.15 3.24 6.26 42.14 0.26 3.51 16 5 C -0.31 -8.02 5.06 -20.15 -0.10 -8.12 16 6 C 0.59 19.70 7.18 86.66 0.62 20.32 16 7 O -0.58 -24.25 15.93 -4.05 -0.06 -24.32 16 8 N -0.60 -18.91 3.02 -823.56 -2.48 -21.40 16 9 C 0.10 2.28 5.62 86.66 0.49 2.77 16 10 C -0.11 -2.52 5.72 30.56 0.17 -2.35 16 11 C -0.10 -3.11 2.62 -10.08 -0.03 -3.13 16 12 H 0.08 2.57 8.13 -2.39 -0.02 2.55 16 13 C -0.12 -4.28 6.54 31.62 0.21 -4.07 16 14 C 0.18 9.02 5.46 86.85 0.47 9.49 16 15 N -0.61 -32.26 3.35 -670.15 -2.24 -34.51 16 16 C -0.24 -13.70 9.88 84.03 0.83 -12.87 16 17 H 0.07 4.29 7.41 -2.91 -0.02 4.27 16 18 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 19 N -0.95 -58.03 10.43 21.65 0.23 -57.81 16 20 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 24 C 0.15 6.34 2.74 45.45 0.12 6.46 16 25 H 0.01 0.26 7.93 -2.39 -0.02 0.24 16 26 C 0.13 5.28 5.64 85.58 0.48 5.76 16 27 C 0.08 1.79 9.63 85.65 0.82 2.62 16 28 N -0.31 -6.63 12.50 -56.27 -0.70 -7.33 16 29 N -0.36 -6.44 3.98 -354.30 -1.41 -7.85 16 30 C 0.08 0.66 11.06 127.77 1.41 2.08 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.04 1.22 7.67 -2.39 -0.02 1.21 16 36 H 0.07 1.73 7.96 -2.39 -0.02 1.71 16 37 H 0.11 1.31 7.70 -2.38 -0.02 1.30 16 38 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.11 1.99 4.67 -2.39 -0.01 1.98 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.52 7.99 -2.39 -0.02 1.51 16 42 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 44 H 0.00 -0.06 7.77 -2.39 -0.02 -0.08 16 45 H 0.02 1.31 7.19 -2.39 -0.02 1.29 16 46 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.06 2.66 6.79 -2.39 -0.02 2.64 16 48 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 49 H 0.21 3.24 7.61 -2.91 -0.02 3.22 16 50 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.11 0.43 7.62 -2.39 -0.02 0.41 16 Total: -1.00 -79.39 404.03 3.53 -75.87 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.90 Total: 13.05 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 7.28 Total: 14.67 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -6.62 Total: -128.89 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.32 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -79.39 3.53 -75.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042131452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.703 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds