Wall clock time and date at job start Wed Apr 1 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46812 * 2 1 4 4 C 1.50696 * 109.47338 * 120.00346 * 2 1 3 5 5 N 1.30497 * 125.65107 * 300.17295 * 4 2 1 6 6 C 1.34129 * 109.25280 * 180.29203 * 5 4 2 7 7 C 1.34664 * 108.02193 * 359.72938 * 6 5 4 8 8 N 1.35046 * 125.64751 * 119.99868 * 4 2 1 9 9 C 1.46503 * 126.39667 * 359.97438 * 8 4 2 10 10 C 1.50704 * 109.47030 * 84.71137 * 9 8 4 11 11 O 1.21277 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99817 * 179.97438 * 10 9 8 13 13 C 1.44473 * 117.13914 * 0.02562 * 12 10 9 14 14 C 1.50985 * 113.13062 * 148.25404 * 13 12 10 15 15 C 1.48604 * 116.03085 * 32.07823 * 14 13 12 16 16 H 1.08996 * 105.77205 * 206.05420 * 15 14 13 17 17 C 1.53320 * 114.96268 * 90.60819 * 15 14 13 18 18 C 1.54517 * 102.38908 * 196.31491 * 17 15 14 19 19 N 1.46897 * 106.66157 * 27.58748 * 18 17 15 20 20 C 1.36933 * 125.35609 * 164.84682 * 19 18 17 21 21 H 1.08006 * 119.99937 * 188.84979 * 20 19 18 22 22 C 1.38809 * 120.00540 * 8.85085 * 20 19 18 23 23 N 1.31620 * 120.00069 * 8.45235 * 22 20 19 24 24 Si 1.86798 * 120.00399 * 188.45831 * 22 20 19 25 25 H 1.48496 * 109.47241 * 94.43192 * 24 22 20 26 26 H 1.48493 * 109.47201 * 214.43393 * 24 22 20 27 27 H 1.48505 * 109.46923 * 334.43429 * 24 22 20 28 28 C 1.48589 * 109.25307 * 344.79464 * 19 18 17 29 29 H 1.08996 * 109.84800 * 237.31568 * 28 19 18 30 30 C 1.43936 * 117.14021 * 180.02562 * 12 10 9 31 31 H 1.08999 * 109.47394 * 299.99471 * 1 2 3 32 32 H 1.08996 * 109.47602 * 59.99692 * 1 2 3 33 33 H 1.09004 * 109.47370 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46903 * 240.00728 * 2 1 3 35 35 H 1.08996 * 109.47288 * 300.00500 * 3 2 1 36 36 H 1.08998 * 109.46792 * 60.00660 * 3 2 1 37 37 H 1.09000 * 109.46530 * 179.97438 * 3 2 1 38 38 H 1.08004 * 125.98786 * 179.73217 * 6 5 4 39 39 H 1.08004 * 126.58898 * 180.02562 * 7 6 5 40 40 H 1.08993 * 109.47407 * 324.71271 * 9 8 4 41 41 H 1.08994 * 109.46617 * 204.71114 * 9 8 4 42 42 H 1.08996 * 108.75274 * 269.19924 * 13 12 10 43 43 H 1.08997 * 108.74865 * 27.43664 * 13 12 10 44 44 H 1.09003 * 108.16592 * 153.77733 * 14 13 12 45 45 H 1.08995 * 108.17073 * 270.37087 * 14 13 12 46 46 H 1.09001 * 110.82283 * 314.54016 * 17 15 14 47 47 H 1.08995 * 110.82382 * 77.89680 * 17 15 14 48 48 H 1.09001 * 110.01979 * 146.88571 * 18 17 15 49 49 H 1.08996 * 110.02294 * 268.23713 * 18 17 15 50 50 H 0.96998 * 120.00548 * 180.02562 * 23 22 20 51 51 H 1.08999 * 108.41737 * 332.81530 * 30 12 10 52 52 H 1.09007 * 108.42265 * 90.23518 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7834 -0.3640 2.4636 6 6 2.3971 -1.2186 3.2956 7 6 3.0461 -2.1327 2.5495 8 7 2.8120 -1.8131 1.2393 9 6 3.3180 -2.5295 0.0658 10 6 4.5861 -1.8727 -0.4156 11 8 5.0238 -0.9015 0.1641 12 7 5.2337 -2.3646 -1.4903 13 6 4.6575 -3.5227 -2.1338 14 6 4.9086 -3.5605 -3.6222 15 6 6.1888 -2.9629 -4.0830 16 1 6.0147 -2.6461 -5.1112 17 6 7.3679 -3.9399 -4.1608 18 6 8.5826 -2.9880 -4.2374 19 7 8.1890 -1.7472 -3.5567 20 6 9.0474 -0.7641 -3.1423 21 1 8.6848 0.0444 -2.5248 22 6 10.3837 -0.8067 -3.5156 23 7 10.7923 -1.6925 -4.3992 24 14 11.6023 0.3930 -2.7639 25 1 12.2632 -0.2402 -1.5946 26 1 12.6272 0.7564 -3.7751 27 1 10.8850 1.6168 -2.3242 28 6 6.7126 -1.7268 -3.3903 29 1 6.2992 -0.8356 -3.8625 30 6 6.4386 -1.6901 -1.8963 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4425 0.0005 38 1 2.3745 -1.1804 4.3747 39 1 3.6373 -2.9595 2.9148 40 1 2.5707 -2.5015 -0.7271 41 1 3.5246 -3.5656 0.3340 42 1 5.0813 -4.4206 -1.6841 43 1 3.5812 -3.5199 -1.9618 44 1 4.8839 -4.6014 -3.9447 45 1 4.0912 -3.0371 -4.1182 46 1 7.4172 -4.5597 -3.2655 47 1 7.2999 -4.5588 -5.0553 48 1 9.4393 -3.4348 -3.7328 49 1 8.8295 -2.7811 -5.2787 50 1 11.7261 -1.7226 -4.6599 51 1 6.3719 -0.6480 -1.5839 52 1 7.2814 -2.1498 -1.3799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042253764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:41 Heat of formation + Delta-G solvation = 60.479607 kcal Electronic energy + Delta-G solvation = -31978.955156 eV Core-core repulsion = 27980.449630 eV Total energy + Delta-G solvation = -3998.505525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.27804 -40.46210 -38.42178 -35.66482 -35.45605 -34.13543 -33.32670 -31.70367 -29.98790 -28.94690 -28.76188 -27.64076 -27.24162 -24.96756 -24.07203 -22.93391 -22.80281 -21.44392 -20.61647 -20.23641 -19.02179 -17.88427 -17.52802 -17.28209 -16.83852 -16.01997 -15.63216 -15.15001 -15.08016 -14.82386 -14.76905 -14.38736 -14.22462 -13.91226 -13.71546 -13.59563 -13.36173 -13.13309 -12.95035 -12.72760 -12.42845 -12.36926 -12.23499 -11.86535 -11.70784 -11.61396 -11.48837 -11.29155 -11.21582 -11.07681 -10.86819 -10.77444 -10.30645 -10.14742 -10.04090 -9.98701 -9.97027 -9.75911 -9.69410 -9.41833 -8.64853 -8.42367 -8.35628 -6.93298 -5.79921 -3.14676 1.91748 2.45241 2.52970 3.12669 3.18463 3.38171 3.44475 3.46088 4.20668 4.24246 4.35462 4.42566 4.53152 4.61223 4.72462 4.77715 4.92408 4.92965 5.01003 5.13391 5.23331 5.32274 5.39919 5.41874 5.48245 5.53747 5.57890 5.67308 5.71364 5.72806 5.78190 5.84388 5.85953 5.92075 6.06400 6.07882 6.12590 6.23531 6.28158 6.37567 6.45438 6.47012 6.71697 6.74179 6.80350 6.93692 7.06926 7.34944 7.44742 7.55159 7.74901 8.09357 8.11387 8.17744 9.13791 9.73012 10.37416 11.31892 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.003007 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.334262 B = 9310.291229 C =10212.041220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.228 3.772 5 N -0.488 5.488 6 C -0.029 4.029 7 C -0.052 4.052 8 N -0.441 5.441 9 C 0.084 3.916 10 C 0.480 3.520 11 O -0.517 6.517 12 N -0.584 5.584 13 C 0.110 3.890 14 C -0.107 4.107 15 C -0.093 4.093 16 H 0.059 0.941 17 C -0.136 4.136 18 C 0.176 3.824 19 N -0.594 5.594 20 C -0.233 4.233 21 H 0.078 0.922 22 C -0.003 4.003 23 N -0.917 5.917 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.164 3.836 29 H 0.043 0.957 30 C 0.104 3.896 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.037 0.963 50 H 0.253 0.747 51 H 0.077 0.923 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.196 -6.942 5.081 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.034 4.034 5 N -0.206 5.206 6 C -0.176 4.176 7 C -0.184 4.184 8 N -0.123 5.123 9 C -0.043 4.043 10 C 0.264 3.736 11 O -0.392 6.392 12 N -0.317 5.317 13 C -0.013 4.013 14 C -0.146 4.146 15 C -0.112 4.112 16 H 0.077 0.923 17 C -0.175 4.175 18 C 0.051 3.949 19 N -0.319 5.319 20 C -0.361 4.361 21 H 0.096 0.904 22 C -0.200 4.200 23 N -0.564 5.564 24 Si 0.740 3.260 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.057 3.943 29 H 0.061 0.939 30 C -0.020 4.020 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.055 0.945 50 H 0.063 0.937 51 H 0.095 0.905 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.081 -5.787 5.419 21.589 hybrid contribution 1.501 -0.343 0.060 1.541 sum -18.580 -6.130 5.478 20.318 Atomic orbital electron populations 1.21787 0.93153 1.01921 1.02784 1.19523 0.96300 0.96242 0.90696 1.21761 1.01945 0.93727 1.02334 1.23133 0.96444 0.88195 0.95639 1.70162 1.24691 1.26790 0.98929 1.22198 1.01412 0.94525 0.99454 1.22613 1.07922 1.05250 0.82604 1.44895 1.38268 1.23293 1.05891 1.21813 0.96322 0.97487 0.88681 1.20754 0.85767 0.85091 0.81940 1.90786 1.66878 1.25997 1.55563 1.46826 1.26247 1.29977 1.28620 1.20773 0.97440 0.88292 0.94807 1.20316 0.97911 1.02173 0.94165 1.20014 0.94242 0.96454 1.00539 0.92283 1.22650 0.96712 0.97789 1.00312 1.21147 0.92342 0.84311 0.97082 1.44855 0.98534 1.19471 1.69073 1.19038 0.89222 1.02603 1.25268 0.90448 1.24811 0.97512 0.99149 0.98520 1.69975 1.15395 1.37587 1.33426 0.86129 0.81109 0.80441 0.78308 1.21540 1.21696 1.20442 1.20348 0.87279 0.95317 0.91403 0.93874 1.21691 0.84010 0.97790 0.98545 0.91296 0.91857 0.92923 0.90690 0.92005 0.91508 0.92013 0.81470 0.81155 0.86341 0.86128 0.92041 0.90997 0.90436 0.91929 0.92672 0.91937 0.92795 0.94536 0.93684 0.90510 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.18 37.16 0.34 -0.88 16 2 C -0.01 -0.08 3.25 -91.77 -0.30 -0.38 16 3 C -0.14 -1.64 9.18 37.16 0.34 -1.30 16 4 C 0.23 3.05 6.39 -155.42 -0.99 2.06 16 5 N -0.49 -7.18 11.25 -10.82 -0.12 -7.30 16 6 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 7 C -0.05 -0.62 11.58 -16.56 -0.19 -0.81 16 8 N -0.44 -5.40 2.24 -115.19 -0.26 -5.66 16 9 C 0.08 0.81 4.55 -5.19 -0.02 0.78 16 10 C 0.48 6.79 7.62 -10.98 -0.08 6.70 16 11 O -0.52 -9.85 15.61 5.56 0.09 -9.76 16 12 N -0.58 -8.12 3.13 -179.15 -0.56 -8.68 16 13 C 0.11 1.07 5.94 -6.14 -0.04 1.03 16 14 C -0.11 -1.12 5.54 -29.89 -0.17 -1.29 16 15 C -0.09 -1.42 2.31 -93.57 -0.22 -1.64 16 16 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 17 C -0.14 -2.28 6.47 -25.77 -0.17 -2.44 16 18 C 0.18 4.03 5.35 -3.03 -0.02 4.01 16 19 N -0.59 -14.38 2.91 -164.53 -0.48 -14.86 16 20 C -0.23 -6.34 9.79 -15.06 -0.15 -6.49 16 21 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 22 C 0.00 -0.08 5.43 -17.43 -0.09 -0.18 16 23 N -0.92 -26.37 10.55 55.49 0.59 -25.78 16 24 Si 0.91 22.16 29.56 -169.99 -5.03 17.13 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.16 3.17 3.57 -68.29 -0.24 2.93 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 30 C 0.10 1.92 5.38 -5.95 -0.03 1.89 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.75 6.85 -51.93 -0.36 0.39 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.17 1.53 8.06 -52.48 -0.42 1.10 16 40 H 0.12 0.81 6.37 -51.93 -0.33 0.48 16 41 H 0.12 0.81 8.02 -51.93 -0.42 0.39 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.44 5.87 -51.93 -0.30 0.14 16 44 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.05 1.39 7.33 -51.93 -0.38 1.01 16 49 H 0.04 0.93 7.69 -51.93 -0.40 0.53 16 50 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.08 1.60 6.98 -51.93 -0.36 1.23 16 52 H 0.07 1.47 7.84 -51.93 -0.41 1.07 16 LS Contribution 404.70 15.07 6.10 6.10 Total: -1.00 -34.50 404.70 -10.74 -45.24 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.83 Total: 0.16 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.24 Total: 3.41 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.83 Total: -62.28 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.50 -10.74 -45.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042253764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.720 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds