Wall clock time and date at job start Wed Apr 1 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46812 * 2 1 4 4 C 1.50696 * 109.47338 * 120.00346 * 2 1 3 5 5 N 1.30497 * 125.65107 * 300.17295 * 4 2 1 6 6 C 1.34129 * 109.25280 * 180.29203 * 5 4 2 7 7 C 1.34664 * 108.02193 * 359.72938 * 6 5 4 8 8 N 1.35046 * 125.64751 * 119.99868 * 4 2 1 9 9 C 1.46503 * 126.39667 * 359.97438 * 8 4 2 10 10 C 1.50704 * 109.47030 * 84.71137 * 9 8 4 11 11 O 1.21277 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99817 * 179.97438 * 10 9 8 13 13 C 1.44473 * 117.13914 * 0.02562 * 12 10 9 14 14 C 1.50985 * 113.13062 * 148.25404 * 13 12 10 15 15 C 1.48604 * 116.03085 * 32.07823 * 14 13 12 16 16 H 1.08996 * 105.77205 * 206.05420 * 15 14 13 17 17 C 1.53320 * 114.96268 * 90.60819 * 15 14 13 18 18 C 1.54517 * 102.38908 * 196.31491 * 17 15 14 19 19 N 1.46897 * 106.66157 * 27.58748 * 18 17 15 20 20 C 1.36933 * 125.35609 * 164.84682 * 19 18 17 21 21 H 1.08006 * 119.99937 * 188.84979 * 20 19 18 22 22 C 1.38809 * 120.00540 * 8.85085 * 20 19 18 23 23 N 1.31620 * 120.00069 * 8.45235 * 22 20 19 24 24 Si 1.86798 * 120.00399 * 188.45831 * 22 20 19 25 25 H 1.48496 * 109.47241 * 94.43192 * 24 22 20 26 26 H 1.48493 * 109.47201 * 214.43393 * 24 22 20 27 27 H 1.48505 * 109.46923 * 334.43429 * 24 22 20 28 28 C 1.48589 * 109.25307 * 344.79464 * 19 18 17 29 29 H 1.08996 * 109.84800 * 237.31568 * 28 19 18 30 30 C 1.43936 * 117.14021 * 180.02562 * 12 10 9 31 31 H 1.08999 * 109.47394 * 299.99471 * 1 2 3 32 32 H 1.08996 * 109.47602 * 59.99692 * 1 2 3 33 33 H 1.09004 * 109.47370 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46903 * 240.00728 * 2 1 3 35 35 H 1.08996 * 109.47288 * 300.00500 * 3 2 1 36 36 H 1.08998 * 109.46792 * 60.00660 * 3 2 1 37 37 H 1.09000 * 109.46530 * 179.97438 * 3 2 1 38 38 H 1.08004 * 125.98786 * 179.73217 * 6 5 4 39 39 H 1.08004 * 126.58898 * 180.02562 * 7 6 5 40 40 H 1.08993 * 109.47407 * 324.71271 * 9 8 4 41 41 H 1.08994 * 109.46617 * 204.71114 * 9 8 4 42 42 H 1.08996 * 108.75274 * 269.19924 * 13 12 10 43 43 H 1.08997 * 108.74865 * 27.43664 * 13 12 10 44 44 H 1.09003 * 108.16592 * 153.77733 * 14 13 12 45 45 H 1.08995 * 108.17073 * 270.37087 * 14 13 12 46 46 H 1.09001 * 110.82283 * 314.54016 * 17 15 14 47 47 H 1.08995 * 110.82382 * 77.89680 * 17 15 14 48 48 H 1.09001 * 110.01979 * 146.88571 * 18 17 15 49 49 H 1.08996 * 110.02294 * 268.23713 * 18 17 15 50 50 H 0.96998 * 120.00548 * 180.02562 * 23 22 20 51 51 H 1.08999 * 108.41737 * 332.81530 * 30 12 10 52 52 H 1.09007 * 108.42265 * 90.23518 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7834 -0.3640 2.4636 6 6 2.3971 -1.2186 3.2956 7 6 3.0461 -2.1327 2.5495 8 7 2.8120 -1.8131 1.2393 9 6 3.3180 -2.5295 0.0658 10 6 4.5861 -1.8727 -0.4156 11 8 5.0238 -0.9015 0.1641 12 7 5.2337 -2.3646 -1.4903 13 6 4.6575 -3.5227 -2.1338 14 6 4.9086 -3.5605 -3.6222 15 6 6.1888 -2.9629 -4.0830 16 1 6.0147 -2.6461 -5.1112 17 6 7.3679 -3.9399 -4.1608 18 6 8.5826 -2.9880 -4.2374 19 7 8.1890 -1.7472 -3.5567 20 6 9.0474 -0.7641 -3.1423 21 1 8.6848 0.0444 -2.5248 22 6 10.3837 -0.8067 -3.5156 23 7 10.7923 -1.6925 -4.3992 24 14 11.6023 0.3930 -2.7639 25 1 12.2632 -0.2402 -1.5946 26 1 12.6272 0.7564 -3.7751 27 1 10.8850 1.6168 -2.3242 28 6 6.7126 -1.7268 -3.3903 29 1 6.2992 -0.8356 -3.8625 30 6 6.4386 -1.6901 -1.8963 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4425 0.0005 38 1 2.3745 -1.1804 4.3747 39 1 3.6373 -2.9595 2.9148 40 1 2.5707 -2.5015 -0.7271 41 1 3.5246 -3.5656 0.3340 42 1 5.0813 -4.4206 -1.6841 43 1 3.5812 -3.5199 -1.9618 44 1 4.8839 -4.6014 -3.9447 45 1 4.0912 -3.0371 -4.1182 46 1 7.4172 -4.5597 -3.2655 47 1 7.2999 -4.5588 -5.0553 48 1 9.4393 -3.4348 -3.7328 49 1 8.8295 -2.7811 -5.2787 50 1 11.7261 -1.7226 -4.6599 51 1 6.3719 -0.6480 -1.5839 52 1 7.2814 -2.1498 -1.3799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042253764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:40 Heat of formation + Delta-G solvation = 39.087514 kcal Electronic energy + Delta-G solvation = -31979.882787 eV Core-core repulsion = 27980.449630 eV Total energy + Delta-G solvation = -3999.433156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.17833 -41.63801 -39.79105 -37.01108 -36.27698 -35.07748 -34.92065 -33.28742 -31.40231 -30.41060 -29.79400 -28.68242 -28.04777 -26.64912 -25.46132 -24.05206 -23.80030 -22.39122 -22.18991 -21.47992 -19.97609 -19.07371 -18.86915 -18.55185 -18.07029 -17.14118 -16.83518 -16.71718 -16.47048 -15.90903 -15.89353 -15.65717 -15.24844 -15.13790 -14.75289 -14.62523 -14.33788 -14.30426 -14.16132 -13.82739 -13.71636 -13.61488 -13.35597 -13.27333 -13.01603 -12.94327 -12.70570 -12.61923 -12.41607 -12.39504 -12.13074 -12.04295 -11.90112 -11.76107 -11.50722 -11.38415 -11.23570 -11.14006 -10.91725 -10.73216 -10.43409 -9.60884 -9.26138 -8.95038 -7.93437 -5.28663 0.98657 1.38915 1.40162 1.41399 1.49180 1.69915 2.11122 2.22657 2.42792 3.24388 3.31284 3.41579 3.53642 3.68769 3.73743 3.75872 3.76883 3.97460 4.07169 4.12481 4.18695 4.21116 4.22713 4.35107 4.38479 4.41273 4.59986 4.65944 4.73610 4.74002 4.78520 4.89069 4.90413 4.93701 4.96443 5.02475 5.05629 5.08180 5.15751 5.26938 5.32832 5.36893 5.43148 5.45453 5.55210 5.62652 5.63459 5.76654 5.87138 6.14630 6.15349 6.35229 7.03947 7.05689 7.18205 7.70565 8.33325 9.16549 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.003007 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.334262 B = 9310.291229 C =10212.041220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.009 4.009 3 C -0.135 4.135 4 C 0.214 3.786 5 N -0.523 5.523 6 C -0.056 4.056 7 C -0.051 4.051 8 N -0.446 5.446 9 C 0.090 3.910 10 C 0.477 3.523 11 O -0.578 6.578 12 N -0.582 5.582 13 C 0.097 3.903 14 C -0.107 4.107 15 C -0.081 4.081 16 H 0.057 0.943 17 C -0.119 4.119 18 C 0.178 3.822 19 N -0.616 5.616 20 C -0.241 4.241 21 H 0.068 0.932 22 C -0.056 4.056 23 N -0.942 5.942 24 Si 0.967 3.033 25 H -0.288 1.288 26 H -0.288 1.288 27 H -0.275 1.275 28 C 0.161 3.839 29 H 0.028 0.972 30 C 0.131 3.869 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.025 0.975 38 H 0.182 0.818 39 H 0.199 0.801 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.014 0.986 49 H 0.002 0.998 50 H 0.249 0.751 51 H 0.040 0.960 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.552 -9.699 4.629 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 C -0.193 4.193 4 C -0.049 4.049 5 N -0.242 5.242 6 C -0.202 4.202 7 C -0.183 4.183 8 N -0.128 5.128 9 C -0.036 4.036 10 C 0.265 3.735 11 O -0.458 6.458 12 N -0.313 5.313 13 C -0.024 4.024 14 C -0.145 4.145 15 C -0.100 4.100 16 H 0.075 0.925 17 C -0.157 4.157 18 C 0.054 3.946 19 N -0.341 5.341 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.250 4.250 23 N -0.591 5.591 24 Si 0.796 3.204 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.200 1.200 28 C 0.054 3.946 29 H 0.046 0.954 30 C 0.005 3.995 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.199 0.801 39 H 0.216 0.784 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.099 0.901 43 H 0.142 0.858 44 H 0.131 0.869 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.032 0.968 49 H 0.020 0.980 50 H 0.058 0.942 51 H 0.059 0.941 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -23.493 -8.584 4.960 25.500 hybrid contribution 2.568 0.570 0.227 2.640 sum -20.925 -8.015 5.187 23.000 Atomic orbital electron populations 1.21722 0.91329 1.02745 1.02974 1.19660 0.97732 0.95094 0.90439 1.21708 0.99534 0.95210 1.02864 1.23557 0.96701 0.88734 0.95900 1.70113 1.26062 1.27898 1.00087 1.22630 1.02161 0.94994 1.00456 1.23111 1.07142 1.05476 0.82582 1.45084 1.37835 1.23221 1.06689 1.22129 0.94222 0.98278 0.88937 1.21635 0.86746 0.84200 0.80955 1.90778 1.68731 1.28862 1.57382 1.46825 1.24615 1.30876 1.29032 1.21297 1.00370 0.86738 0.94028 1.20374 0.95042 1.04104 0.94950 1.20034 0.95898 0.94012 1.00073 0.92470 1.22517 0.93884 0.96927 1.02355 1.20967 0.94283 0.85193 0.94197 1.45122 1.00774 1.19373 1.68830 1.19236 0.90204 1.02968 1.24625 0.91437 1.25521 0.99031 1.01059 0.99404 1.70154 1.15194 1.39042 1.34662 0.85229 0.79014 0.78737 0.77414 1.21483 1.21470 1.19960 1.20532 0.84555 0.97345 0.92126 0.95391 1.20902 0.85400 0.95988 0.97232 0.92912 0.89835 0.91749 0.89110 0.89778 0.92674 0.95531 0.80088 0.78363 0.82335 0.81886 0.90134 0.85838 0.86881 0.89622 0.91377 0.88953 0.96781 0.98023 0.94219 0.94141 0.94993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.18 71.98 0.66 -1.30 16 2 C -0.01 -0.18 3.25 -11.54 -0.04 -0.22 16 3 C -0.13 -3.18 9.18 71.98 0.66 -2.52 16 4 C 0.21 5.41 6.39 138.13 0.88 6.30 16 5 N -0.52 -15.27 11.25 -188.13 -2.12 -17.38 16 6 C -0.06 -1.41 11.87 83.52 0.99 -0.42 16 7 C -0.05 -1.10 11.58 83.09 0.96 -0.14 16 8 N -0.45 -9.70 2.24 -518.35 -1.16 -10.86 16 9 C 0.09 1.28 4.55 85.63 0.39 1.67 16 10 C 0.48 12.45 7.62 87.66 0.67 13.11 16 11 O -0.58 -22.38 15.61 -3.02 -0.05 -22.43 16 12 N -0.58 -14.71 3.13 -839.11 -2.63 -17.33 16 13 C 0.10 1.29 5.94 86.10 0.51 1.80 16 14 C -0.11 -1.60 5.54 28.55 0.16 -1.44 16 15 C -0.08 -2.25 2.31 -12.71 -0.03 -2.28 16 16 H 0.06 1.63 8.00 -2.39 -0.02 1.61 16 17 C -0.12 -3.72 6.47 31.22 0.20 -3.52 16 18 C 0.18 8.47 5.35 86.82 0.46 8.93 16 19 N -0.62 -31.16 2.91 -674.46 -1.97 -33.13 16 20 C -0.24 -13.83 9.79 84.03 0.82 -13.00 16 21 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 22 C -0.06 -3.26 5.43 84.86 0.46 -2.80 16 23 N -0.94 -56.77 10.55 21.65 0.23 -56.54 16 24 Si 0.97 47.38 29.56 68.60 2.03 49.41 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 28 C 0.16 6.29 3.57 43.61 0.16 6.44 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 C 0.13 4.95 5.38 86.50 0.47 5.42 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.09 1.50 6.85 -2.39 -0.02 1.49 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.18 3.66 8.06 -2.91 -0.02 3.63 16 39 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.16 1.04 6.37 -2.39 -0.02 1.02 16 41 H 0.16 1.04 8.02 -2.39 -0.02 1.02 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.12 0.47 5.87 -2.39 -0.01 0.45 16 44 H 0.11 1.06 7.94 -2.39 -0.02 1.04 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.01 0.75 7.33 -2.39 -0.02 0.73 16 49 H 0.00 0.09 7.69 -2.39 -0.02 0.07 16 50 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 51 H 0.04 1.80 6.98 -2.39 -0.02 1.78 16 52 H 0.03 1.43 7.84 -2.38 -0.02 1.41 16 Total: -1.00 -86.31 404.70 3.62 -82.69 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.89 Total: 9.56 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 8.39 Total: 16.03 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -7.64 Total: -135.25 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -86.31 3.62 -82.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042253764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.775 kcal (2) G-P(sol) polarization free energy of solvation -86.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds