Wall clock time and date at job start Wed Apr 1 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46912 * 2 1 4 4 C 1.50699 * 109.47227 * 120.00212 * 2 1 3 5 5 C 1.39676 * 126.06613 * 275.26137 * 4 2 1 6 6 C 1.38414 * 105.35657 * 180.14817 * 5 4 2 7 7 C 1.47156 * 126.88262 * 179.97438 * 6 5 4 8 8 O 1.21630 * 119.99757 * 201.38017 * 7 6 5 9 9 N 1.34772 * 120.00159 * 21.37224 * 7 6 5 10 10 C 1.47159 * 121.22366 * 6.37563 * 9 7 6 11 11 C 1.52831 * 107.97825 * 122.66942 * 10 9 7 12 12 C 1.53095 * 110.58353 * 57.34941 * 11 10 9 13 13 H 1.09000 * 112.48822 * 70.57304 * 12 11 10 14 14 C 1.56480 * 106.41793 * 195.41038 * 12 11 10 15 15 C 1.54506 * 102.40093 * 78.36294 * 14 12 11 16 16 N 1.47426 * 107.29704 * 22.90813 * 15 14 12 17 17 C 1.36940 * 126.05725 * 181.51484 * 16 15 14 18 18 H 1.08000 * 119.99997 * 174.86245 * 17 16 15 19 19 C 1.38810 * 120.00257 * 354.86407 * 17 16 15 20 20 N 1.31621 * 119.99657 * 5.47269 * 19 17 16 21 21 Si 1.86792 * 120.00258 * 185.46795 * 19 17 16 22 22 H 1.48500 * 109.47341 * 94.99824 * 21 19 17 23 23 H 1.48502 * 109.47384 * 214.99626 * 21 19 17 24 24 H 1.48496 * 109.47167 * 334.99594 * 21 19 17 25 25 C 1.46468 * 107.88688 * 1.51877 * 16 15 14 26 26 H 1.08997 * 108.42817 * 89.25943 * 25 16 15 27 27 C 1.46758 * 121.22478 * 186.34726 * 9 7 6 28 28 N 1.36604 * 106.22905 * 359.65941 * 6 5 4 29 29 C 1.46503 * 125.18536 * 180.20304 * 28 6 5 30 30 N 1.28438 * 109.62128 * 0.22096 * 28 6 5 31 31 H 1.09001 * 109.46646 * 299.99631 * 1 2 3 32 32 H 1.08998 * 109.47221 * 59.99845 * 1 2 3 33 33 H 1.09003 * 109.47131 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46646 * 240.00369 * 2 1 3 35 35 H 1.08998 * 109.46699 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46907 * 300.00157 * 3 2 1 37 37 H 1.08996 * 109.46980 * 60.00242 * 3 2 1 38 38 H 1.07994 * 127.32515 * 0.07314 * 5 4 2 39 39 H 1.09002 * 109.76049 * 242.29743 * 10 9 7 40 40 H 1.09001 * 109.75365 * 3.00212 * 10 9 7 41 41 H 1.09006 * 109.25244 * 177.63074 * 11 10 9 42 42 H 1.09000 * 109.25973 * 297.09849 * 11 10 9 43 43 H 1.09008 * 110.91769 * 320.13940 * 14 12 11 44 44 H 1.09001 * 110.85002 * 196.56080 * 14 12 11 45 45 H 1.08997 * 109.90253 * 263.43252 * 15 14 12 46 46 H 1.09004 * 109.89955 * 142.37340 * 15 14 12 47 47 H 0.97000 * 119.99761 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.22669 * 112.24821 * 27 9 7 49 49 H 1.09005 * 109.18809 * 352.86933 * 27 9 7 50 50 H 1.08999 * 109.46588 * 84.24706 * 29 28 6 51 51 H 1.08998 * 109.46685 * 204.24171 * 29 28 6 52 52 H 1.08992 * 109.47383 * 324.24388 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2089 -0.1417 2.4939 6 6 2.6861 -1.1658 3.2935 7 6 3.0338 -1.0830 4.7209 8 8 3.7865 -1.9026 5.2120 9 7 2.5184 -0.0990 5.4841 10 6 1.5001 0.8225 4.9554 11 6 0.2692 0.7327 5.8567 12 6 0.6378 1.0622 7.3057 13 1 0.8715 2.1174 7.4468 14 6 -0.5537 0.5643 8.1894 15 6 -0.2999 -0.9581 8.2615 16 7 1.1337 -1.1765 7.9958 17 6 1.7672 -2.3892 7.9382 18 1 2.8079 -2.4419 7.6542 19 6 1.0718 -3.5508 8.2446 20 7 -0.2212 -3.4995 8.4855 21 14 1.9709 -5.1866 8.3152 22 1 2.3652 -5.4747 9.7176 23 1 1.0769 -6.2645 7.8210 24 1 3.1852 -5.1211 7.4630 25 6 1.7605 0.1335 7.8045 26 1 2.0922 0.5017 8.7753 27 6 2.9516 0.0926 6.8731 28 7 2.7626 -2.2706 2.4936 29 6 3.2163 -3.5952 2.9248 30 7 2.3766 -1.9708 1.3059 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 2.0155 0.8802 2.7848 39 1 1.8871 1.8415 4.9604 40 1 1.2349 0.5341 3.9382 41 1 -0.4840 1.4393 5.5079 42 1 -0.1372 -0.2777 5.8107 43 1 -1.5092 0.7746 7.7087 44 1 -0.5129 1.0107 9.1829 45 1 -0.8991 -1.4703 7.5088 46 1 -0.5541 -1.3300 9.2541 47 1 -0.7072 -4.3113 8.6993 48 1 3.5011 1.0308 6.9516 49 1 3.6048 -0.7310 7.1616 50 1 2.3841 -4.1348 3.3768 51 1 3.5847 -4.1514 2.0629 52 1 4.0175 -3.4848 3.6555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042297069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:25 Heat of formation + Delta-G solvation = 84.245099 kcal Electronic energy + Delta-G solvation = -33103.394731 eV Core-core repulsion = 29105.919754 eV Total energy + Delta-G solvation = -3997.474976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.50756 -39.82455 -37.95459 -36.04133 -35.12043 -32.86202 -32.27608 -31.61744 -30.67810 -28.93839 -28.36470 -27.27036 -26.68346 -24.90292 -24.28857 -23.13734 -22.33562 -21.91395 -20.47217 -19.95052 -18.94730 -18.32409 -16.97534 -16.60185 -16.32376 -16.05891 -15.50044 -14.91451 -14.63982 -14.47893 -14.29661 -14.19765 -14.00501 -13.85324 -13.52335 -13.33032 -12.91720 -12.76291 -12.59668 -12.48339 -12.33554 -12.16807 -11.99150 -11.60781 -11.47172 -11.42358 -11.27324 -11.25109 -11.14392 -10.91378 -10.80832 -10.71080 -10.37278 -10.10320 -9.86030 -9.83259 -9.67897 -9.49342 -9.48701 -8.90366 -8.70762 -8.52071 -8.17393 -6.75984 -5.64773 -2.95968 1.52805 2.49784 2.63799 3.33870 3.44525 3.50671 3.55120 3.59302 4.37875 4.56287 4.59835 4.81952 5.00872 5.08038 5.08965 5.13196 5.30220 5.33493 5.36977 5.40372 5.50300 5.51908 5.52772 5.55964 5.58331 5.69698 5.72875 5.73652 5.75551 5.82604 5.88014 5.92571 5.96560 6.02897 6.13321 6.16481 6.22565 6.24598 6.29474 6.42202 6.47619 6.57639 6.61925 6.72268 6.86805 6.93996 7.04842 7.61243 7.67077 7.75796 7.92430 8.19850 8.30579 8.51353 9.29446 9.90403 10.55216 11.47971 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.004472 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.109884 B = 6259.849555 C = 7565.803794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.007 4.007 3 C -0.143 4.143 4 C 0.028 3.972 5 C -0.203 4.203 6 C -0.014 4.014 7 C 0.593 3.407 8 O -0.532 6.532 9 N -0.576 5.576 10 C 0.080 3.920 11 C -0.122 4.122 12 C -0.103 4.103 13 H 0.076 0.924 14 C -0.143 4.143 15 C 0.178 3.822 16 N -0.588 5.588 17 C -0.213 4.213 18 H 0.084 0.916 19 C -0.008 4.008 20 N -0.925 5.925 21 Si 0.901 3.099 22 H -0.291 1.291 23 H -0.294 1.294 24 H -0.278 1.278 25 C 0.154 3.846 26 H 0.028 0.972 27 C 0.115 3.885 28 N -0.256 5.256 29 C 0.083 3.917 30 N -0.284 5.284 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.169 0.831 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.040 0.960 46 H 0.043 0.957 47 H 0.249 0.751 48 H 0.058 0.942 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.093 12.262 -13.813 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.128 4.128 5 C -0.232 4.232 6 C -0.144 4.144 7 C 0.379 3.621 8 O -0.409 6.409 9 N -0.307 5.307 10 C -0.043 4.043 11 C -0.160 4.160 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.181 4.181 15 C 0.053 3.947 16 N -0.313 5.313 17 C -0.341 4.341 18 H 0.102 0.898 19 C -0.204 4.204 20 N -0.573 5.573 21 Si 0.732 3.268 22 H -0.218 1.218 23 H -0.221 1.221 24 H -0.203 1.203 25 C 0.045 3.955 26 H 0.046 0.954 27 C -0.008 4.008 28 N -0.042 5.042 29 C -0.057 4.057 30 N -0.116 5.116 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.186 0.814 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.115 0.885 50 H 0.104 0.896 51 H 0.111 0.889 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.608 10.399 -14.061 17.682 hybrid contribution 0.143 -0.365 0.728 0.827 sum 2.751 10.034 -13.333 16.912 Atomic orbital electron populations 1.21821 0.94005 1.02237 1.01964 1.19378 0.95571 0.94820 0.92986 1.21820 1.01293 0.94835 1.02095 1.21882 1.04508 0.90282 0.96150 1.22272 1.07920 1.00145 0.92823 1.21523 1.09607 0.88965 0.94285 1.16755 0.80982 0.81173 0.83225 1.90779 1.37520 1.39150 1.73434 1.47423 1.40065 1.30758 1.12490 1.22518 0.88901 0.92904 0.99935 1.21822 0.96425 1.03226 0.94512 1.22479 0.97131 0.97765 0.94865 0.90595 1.23226 0.96773 0.99871 0.98265 1.21214 0.85173 0.88046 1.00246 1.44295 1.04386 0.99725 1.82931 1.19108 0.94769 0.82189 1.38061 0.89801 1.24714 0.95811 0.97573 1.02288 1.69972 1.06062 1.26577 1.54676 0.86221 0.78838 0.83986 0.77727 1.21799 1.22073 1.20307 1.20690 0.91539 0.88280 0.94958 0.95449 1.21479 0.98056 1.01567 0.79701 1.45499 1.44195 1.09606 1.04904 1.22374 1.02606 0.78708 1.02012 1.73069 1.17571 1.17738 1.03256 0.92234 0.92185 0.92521 0.90076 0.92464 0.92103 0.92148 0.81397 0.91621 0.87617 0.91945 0.90251 0.92283 0.92696 0.94165 0.93837 0.94102 0.92338 0.88486 0.89581 0.88944 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.18 37.16 0.34 -0.97 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -1.13 8.79 37.16 0.33 -0.81 16 4 C 0.03 0.39 6.13 -82.47 -0.51 -0.12 16 5 C -0.20 -2.81 7.91 -38.98 -0.31 -3.11 16 6 C -0.01 -0.24 6.63 -82.06 -0.54 -0.79 16 7 C 0.59 11.34 7.60 -12.64 -0.10 11.24 16 8 O -0.53 -11.76 14.31 5.25 0.08 -11.68 16 9 N -0.58 -9.97 2.97 -175.46 -0.52 -10.49 16 10 C 0.08 1.10 5.43 -3.77 -0.02 1.08 16 11 C -0.12 -1.86 5.05 -26.77 -0.14 -1.99 16 12 C -0.10 -1.65 3.68 -88.18 -0.32 -1.97 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.14 -2.55 6.36 -24.07 -0.15 -2.70 16 15 C 0.18 4.21 4.60 -2.75 -0.01 4.19 16 16 N -0.59 -14.37 3.20 -164.42 -0.53 -14.90 16 17 C -0.21 -5.88 9.71 -15.06 -0.15 -6.03 16 18 H 0.08 2.37 6.33 -52.49 -0.33 2.03 16 19 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 20 N -0.92 -27.40 10.41 55.49 0.58 -26.82 16 21 Si 0.90 23.00 29.56 -169.99 -5.02 17.97 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.15 2.99 2.97 -68.30 -0.20 2.79 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 C 0.11 2.08 5.69 -4.78 -0.03 2.05 16 28 N -0.26 -4.25 3.75 -63.88 -0.24 -4.49 16 29 C 0.08 1.23 10.92 59.85 0.65 1.88 16 30 N -0.28 -4.48 11.90 33.64 0.40 -4.08 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 38 H 0.17 1.86 5.28 -52.49 -0.28 1.58 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.11 1.37 3.49 -51.93 -0.18 1.19 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.55 6.85 -51.93 -0.36 1.20 16 43 H 0.06 0.96 7.98 -51.92 -0.41 0.54 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.04 1.07 7.19 -51.93 -0.37 0.70 16 46 H 0.04 1.16 7.44 -51.93 -0.39 0.78 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.10 2.05 5.50 -51.93 -0.29 1.76 16 50 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 51 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 52 H 0.11 1.77 6.42 -51.93 -0.33 1.43 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -33.30 393.07 -9.27 -42.57 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.38 Total: 1.97 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.56 Total: 4.03 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.31 Total: -60.79 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.30 -9.27 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042297069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.818 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds