Wall clock time and date at job start Wed Apr 1 2020 04:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46912 * 2 1 4 4 C 1.50699 * 109.47227 * 120.00212 * 2 1 3 5 5 C 1.39676 * 126.06613 * 275.26137 * 4 2 1 6 6 C 1.38414 * 105.35657 * 180.14817 * 5 4 2 7 7 C 1.47156 * 126.88262 * 179.97438 * 6 5 4 8 8 O 1.21630 * 119.99757 * 201.38017 * 7 6 5 9 9 N 1.34772 * 120.00159 * 21.37224 * 7 6 5 10 10 C 1.47159 * 121.22366 * 6.37563 * 9 7 6 11 11 C 1.52831 * 107.97825 * 122.66942 * 10 9 7 12 12 C 1.53095 * 110.58353 * 57.34941 * 11 10 9 13 13 H 1.09000 * 112.48822 * 70.57304 * 12 11 10 14 14 C 1.56480 * 106.41793 * 195.41038 * 12 11 10 15 15 C 1.54506 * 102.40093 * 78.36294 * 14 12 11 16 16 N 1.47426 * 107.29704 * 22.90813 * 15 14 12 17 17 C 1.36940 * 126.05725 * 181.51484 * 16 15 14 18 18 H 1.08000 * 119.99997 * 174.86245 * 17 16 15 19 19 C 1.38810 * 120.00257 * 354.86407 * 17 16 15 20 20 N 1.31621 * 119.99657 * 5.47269 * 19 17 16 21 21 Si 1.86792 * 120.00258 * 185.46795 * 19 17 16 22 22 H 1.48500 * 109.47341 * 94.99824 * 21 19 17 23 23 H 1.48502 * 109.47384 * 214.99626 * 21 19 17 24 24 H 1.48496 * 109.47167 * 334.99594 * 21 19 17 25 25 C 1.46468 * 107.88688 * 1.51877 * 16 15 14 26 26 H 1.08997 * 108.42817 * 89.25943 * 25 16 15 27 27 C 1.46758 * 121.22478 * 186.34726 * 9 7 6 28 28 N 1.36604 * 106.22905 * 359.65941 * 6 5 4 29 29 C 1.46503 * 125.18536 * 180.20304 * 28 6 5 30 30 N 1.28438 * 109.62128 * 0.22096 * 28 6 5 31 31 H 1.09001 * 109.46646 * 299.99631 * 1 2 3 32 32 H 1.08998 * 109.47221 * 59.99845 * 1 2 3 33 33 H 1.09003 * 109.47131 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46646 * 240.00369 * 2 1 3 35 35 H 1.08998 * 109.46699 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46907 * 300.00157 * 3 2 1 37 37 H 1.08996 * 109.46980 * 60.00242 * 3 2 1 38 38 H 1.07994 * 127.32515 * 0.07314 * 5 4 2 39 39 H 1.09002 * 109.76049 * 242.29743 * 10 9 7 40 40 H 1.09001 * 109.75365 * 3.00212 * 10 9 7 41 41 H 1.09006 * 109.25244 * 177.63074 * 11 10 9 42 42 H 1.09000 * 109.25973 * 297.09849 * 11 10 9 43 43 H 1.09008 * 110.91769 * 320.13940 * 14 12 11 44 44 H 1.09001 * 110.85002 * 196.56080 * 14 12 11 45 45 H 1.08997 * 109.90253 * 263.43252 * 15 14 12 46 46 H 1.09004 * 109.89955 * 142.37340 * 15 14 12 47 47 H 0.97000 * 119.99761 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.22669 * 112.24821 * 27 9 7 49 49 H 1.09005 * 109.18809 * 352.86933 * 27 9 7 50 50 H 1.08999 * 109.46588 * 84.24706 * 29 28 6 51 51 H 1.08998 * 109.46685 * 204.24171 * 29 28 6 52 52 H 1.08992 * 109.47383 * 324.24388 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2089 -0.1417 2.4939 6 6 2.6861 -1.1658 3.2935 7 6 3.0338 -1.0830 4.7209 8 8 3.7865 -1.9026 5.2120 9 7 2.5184 -0.0990 5.4841 10 6 1.5001 0.8225 4.9554 11 6 0.2692 0.7327 5.8567 12 6 0.6378 1.0622 7.3057 13 1 0.8715 2.1174 7.4468 14 6 -0.5537 0.5643 8.1894 15 6 -0.2999 -0.9581 8.2615 16 7 1.1337 -1.1765 7.9958 17 6 1.7672 -2.3892 7.9382 18 1 2.8079 -2.4419 7.6542 19 6 1.0718 -3.5508 8.2446 20 7 -0.2212 -3.4995 8.4855 21 14 1.9709 -5.1866 8.3152 22 1 2.3652 -5.4747 9.7176 23 1 1.0769 -6.2645 7.8210 24 1 3.1852 -5.1211 7.4630 25 6 1.7605 0.1335 7.8045 26 1 2.0922 0.5017 8.7753 27 6 2.9516 0.0926 6.8731 28 7 2.7626 -2.2706 2.4936 29 6 3.2163 -3.5952 2.9248 30 7 2.3766 -1.9708 1.3059 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 2.0155 0.8802 2.7848 39 1 1.8871 1.8415 4.9604 40 1 1.2349 0.5341 3.9382 41 1 -0.4840 1.4393 5.5079 42 1 -0.1372 -0.2777 5.8107 43 1 -1.5092 0.7746 7.7087 44 1 -0.5129 1.0107 9.1829 45 1 -0.8991 -1.4703 7.5088 46 1 -0.5541 -1.3300 9.2541 47 1 -0.7072 -4.3113 8.6993 48 1 3.5011 1.0308 6.9516 49 1 3.6048 -0.7310 7.1616 50 1 2.3841 -4.1348 3.3768 51 1 3.5847 -4.1514 2.0629 52 1 4.0175 -3.4848 3.6555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042297069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:24 Heat of formation + Delta-G solvation = 63.119757 kcal Electronic energy + Delta-G solvation = -33104.310794 eV Core-core repulsion = 29105.919754 eV Total energy + Delta-G solvation = -3998.391040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.67343 -41.24676 -39.47860 -37.02747 -36.52376 -34.69028 -33.39918 -33.04267 -32.18975 -30.42089 -30.04008 -28.00512 -27.71245 -26.56738 -25.98723 -24.34578 -23.54625 -23.17632 -21.75585 -21.57040 -20.26683 -19.57463 -18.51776 -18.24317 -17.58950 -17.29277 -17.02939 -16.53542 -16.08933 -15.88070 -15.65888 -15.46192 -15.32731 -15.01194 -14.87403 -14.34296 -14.26355 -14.21255 -13.91465 -13.72658 -13.54986 -13.44646 -13.19921 -13.03546 -12.96426 -12.77625 -12.67628 -12.52447 -12.35879 -12.25500 -12.08010 -12.03368 -11.95520 -11.64251 -11.44781 -11.36038 -11.25884 -11.13841 -10.88435 -10.66815 -10.14501 -9.83020 -9.52390 -8.79946 -7.84866 -5.13974 0.26803 1.29755 1.34572 1.35236 1.45943 1.56489 2.04002 2.26006 2.46820 3.32573 3.34813 3.41715 3.60027 3.88006 3.90944 3.94670 4.11388 4.12764 4.15015 4.26944 4.28516 4.37015 4.43749 4.47026 4.50013 4.50673 4.60648 4.63145 4.68268 4.72245 4.74742 4.89424 4.90763 4.95794 5.02039 5.08635 5.14081 5.14317 5.17968 5.25994 5.32067 5.46474 5.51410 5.56133 5.57818 5.64721 5.68411 5.71866 5.73530 5.81413 6.23394 6.41298 7.02220 7.13633 7.15525 7.83798 8.47068 9.26379 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.004472 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.109884 B = 6259.849555 C = 7565.803794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 C -0.139 4.139 4 C 0.030 3.970 5 C -0.181 4.181 6 C -0.046 4.046 7 C 0.582 3.418 8 O -0.579 6.579 9 N -0.576 5.576 10 C 0.078 3.922 11 C -0.119 4.119 12 C -0.084 4.084 13 H 0.128 0.872 14 C -0.129 4.129 15 C 0.186 3.814 16 N -0.606 5.606 17 C -0.200 4.200 18 H 0.072 0.928 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.952 3.048 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.280 1.280 25 C 0.140 3.860 26 H 0.032 0.968 27 C 0.118 3.882 28 N -0.273 5.273 29 C 0.085 3.915 30 N -0.303 5.303 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.203 0.797 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.069 0.931 45 H -0.002 1.002 46 H 0.000 1.000 47 H 0.240 0.760 48 H 0.104 0.896 49 H 0.056 0.944 50 H 0.072 0.928 51 H 0.119 0.881 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 16.863 -15.778 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.197 4.197 4 C -0.127 4.127 5 C -0.210 4.210 6 C -0.174 4.174 7 C 0.369 3.631 8 O -0.459 6.459 9 N -0.307 5.307 10 C -0.043 4.043 11 C -0.157 4.157 12 C -0.103 4.103 13 H 0.146 0.854 14 C -0.167 4.167 15 C 0.061 3.939 16 N -0.331 5.331 17 C -0.330 4.330 18 H 0.090 0.910 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.782 3.218 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.205 1.205 25 C 0.034 3.966 26 H 0.049 0.951 27 C -0.005 4.005 28 N -0.060 5.060 29 C -0.055 4.055 30 N -0.135 5.135 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.220 0.780 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.050 0.950 48 H 0.122 0.878 49 H 0.074 0.926 50 H 0.090 0.910 51 H 0.138 0.862 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.396 15.058 -16.030 22.124 hybrid contribution 0.219 -1.734 1.300 2.179 sum 2.614 13.324 -14.730 20.033 Atomic orbital electron populations 1.21814 0.93178 1.01403 1.03370 1.19573 0.96130 0.95936 0.91130 1.21823 1.00989 0.93148 1.03730 1.22605 1.03051 0.89570 0.97456 1.22663 1.05538 1.00743 0.92007 1.21541 1.11837 0.90378 0.93667 1.17191 0.80636 0.80938 0.84331 1.90746 1.39723 1.40922 1.74550 1.47594 1.40330 1.30755 1.11987 1.22843 0.87400 0.94406 0.99614 1.21800 0.98015 1.01260 0.94585 1.22545 0.93831 0.99359 0.94578 0.85375 1.23094 0.98850 0.94739 1.00066 1.20953 0.84372 0.92288 0.96299 1.44498 1.05144 1.00791 1.82629 1.19183 0.94261 0.83882 1.35685 0.91017 1.25337 0.96549 1.00269 1.03757 1.70170 1.06975 1.26392 1.56627 0.85415 0.77656 0.81108 0.77577 1.21371 1.22322 1.20523 1.21043 0.93333 0.86509 0.95762 0.95081 1.21395 0.97021 1.02126 0.79972 1.45630 1.45189 1.09900 1.05242 1.22313 1.01535 0.78909 1.02757 1.73070 1.18199 1.19235 1.02993 0.91891 0.89726 0.94502 0.90132 0.92964 0.90009 0.91045 0.78048 0.86647 0.86944 0.87722 0.95591 0.90125 0.91237 0.98333 0.98210 0.95024 0.87798 0.92590 0.90960 0.86209 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.18 71.98 0.66 -1.48 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -1.61 8.79 71.98 0.63 -0.98 16 4 C 0.03 0.76 6.13 43.05 0.26 1.03 16 5 C -0.18 -4.54 7.91 22.66 0.18 -4.37 16 6 C -0.05 -1.54 6.63 40.79 0.27 -1.27 16 7 C 0.58 22.56 7.60 86.59 0.66 23.22 16 8 O -0.58 -27.04 14.31 -4.13 -0.06 -27.10 16 9 N -0.58 -19.03 2.97 -827.27 -2.46 -21.48 16 10 C 0.08 1.79 5.43 86.20 0.47 2.26 16 11 C -0.12 -3.15 5.05 30.57 0.15 -2.99 16 12 C -0.08 -2.33 3.68 -9.21 -0.03 -2.36 16 13 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 14 C -0.13 -4.30 6.36 32.32 0.21 -4.09 16 15 C 0.19 9.09 4.60 86.71 0.40 9.49 16 16 N -0.61 -30.42 3.20 -674.12 -2.15 -32.57 16 17 C -0.20 -11.61 9.71 84.03 0.82 -10.79 16 18 H 0.07 4.29 6.33 -2.91 -0.02 4.27 16 19 C -0.07 -4.03 5.48 84.86 0.47 -3.57 16 20 N -0.95 -59.70 10.41 21.65 0.23 -59.47 16 21 Si 0.95 49.91 29.56 68.60 2.03 51.94 16 22 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 23 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 24 H -0.28 -14.57 7.11 99.48 0.71 -13.87 16 25 C 0.14 5.23 2.97 44.77 0.13 5.36 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 C 0.12 4.09 5.69 85.76 0.49 4.57 16 28 N -0.27 -9.28 3.75 -356.02 -1.33 -10.61 16 29 C 0.08 2.68 10.92 127.77 1.40 4.08 16 30 N -0.30 -9.45 11.90 -47.49 -0.57 -10.02 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.07 0.68 7.37 -2.39 -0.02 0.66 16 38 H 0.20 3.46 5.28 -2.91 -0.02 3.44 16 39 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 2.45 3.49 -2.39 -0.01 2.44 16 41 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.03 0.97 6.85 -2.39 -0.02 0.96 16 43 H 0.08 2.36 7.98 -2.38 -0.02 2.34 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.00 -0.09 7.19 -2.39 -0.02 -0.11 16 46 H 0.00 -0.02 7.44 -2.38 -0.02 -0.04 16 47 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.06 2.42 5.50 -2.38 -0.01 2.41 16 50 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 51 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 52 H 0.09 3.29 6.42 -2.39 -0.02 3.28 16 Total: -1.00 -81.63 393.07 3.72 -77.91 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.92 Total: 13.47 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 7.12 Total: 17.94 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -6.28 Total: -134.15 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.03 Total: 51.94 kcal Total: -81.63 3.72 -77.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042297069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.029 kcal (2) G-P(sol) polarization free energy of solvation -81.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds