Wall clock time and date at job start Wed Apr 1 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 C 1.53000 * 109.46812 * 240.00197 * 2 1 3 5 5 C 1.50699 * 109.47304 * 120.00318 * 2 1 3 6 6 N 1.30451 * 125.98677 * 248.15472 * 5 2 1 7 7 N 1.39930 * 108.89710 * 180.02562 * 6 5 2 8 8 H 0.97003 * 125.75355 * 180.26349 * 7 6 5 9 9 C 1.34263 * 108.49240 * 359.97438 * 7 6 5 10 10 C 1.38042 * 107.41535 * 0.02562 * 9 7 6 11 11 C 1.47431 * 126.41454 * 180.02562 * 10 9 7 12 12 O 1.21602 * 120.00009 * 125.95005 * 11 10 9 13 13 N 1.34778 * 119.99863 * 305.94537 * 11 10 9 14 14 C 1.47151 * 121.21246 * 3.99998 * 13 11 10 15 15 C 1.53340 * 107.71620 * 122.68656 * 14 13 11 16 16 C 1.53093 * 110.49602 * 57.57152 * 15 14 13 17 17 H 1.08998 * 113.05884 * 70.86554 * 16 15 14 18 18 C 1.56031 * 106.39033 * 195.29026 * 16 15 14 19 19 C 1.54504 * 102.60884 * 78.38590 * 18 16 15 20 20 N 1.47429 * 107.15020 * 22.84054 * 19 18 16 21 21 C 1.36940 * 126.05706 * 181.66835 * 20 19 18 22 22 H 1.07999 * 120.00090 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00405 * 359.95113 * 21 20 19 24 24 N 1.31628 * 119.99818 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00388 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47038 * 59.99938 * 25 23 21 27 27 H 1.48495 * 109.47019 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46615 * 299.99972 * 25 23 21 29 29 C 1.46461 * 107.88417 * 1.62663 * 20 19 18 30 30 H 1.08995 * 108.42180 * 89.23285 * 29 20 19 31 31 C 1.46749 * 121.21400 * 184.27388 * 13 11 10 32 32 H 1.09010 * 109.46797 * 292.99874 * 1 2 3 33 33 H 1.08996 * 109.47475 * 53.00001 * 1 2 3 34 34 H 1.08997 * 109.47101 * 173.00873 * 1 2 3 35 35 H 1.09006 * 109.47045 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.47392 * 300.00210 * 3 2 1 37 37 H 1.09006 * 109.47324 * 60.00738 * 3 2 1 38 38 H 1.09000 * 109.47127 * 305.78212 * 4 2 1 39 39 H 1.09002 * 109.46903 * 65.78498 * 4 2 1 40 40 H 1.09001 * 109.46836 * 185.77945 * 4 2 1 41 41 H 1.07990 * 126.29024 * 180.02562 * 9 7 6 42 42 H 1.09004 * 109.76066 * 242.33427 * 14 13 11 43 43 H 1.09000 * 109.76395 * 3.09689 * 14 13 11 44 44 H 1.08997 * 109.39459 * 297.24720 * 15 14 13 45 45 H 1.09004 * 109.16115 * 177.74390 * 15 14 13 46 46 H 1.08994 * 110.78321 * 320.10101 * 18 16 15 47 47 H 1.09003 * 110.94000 * 196.73397 * 18 16 15 48 48 H 1.09000 * 109.89892 * 263.45746 * 19 18 16 49 49 H 1.09004 * 110.05263 * 142.30561 * 19 18 16 50 50 H 0.97002 * 119.99980 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.22943 * 352.84143 * 31 13 11 52 52 H 1.09005 * 109.22437 * 112.19798 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 2.6583 -0.1579 2.2328 7 7 2.9604 -1.1446 3.1778 8 1 3.4206 -1.0012 4.0196 9 6 2.5003 -2.3222 2.7260 10 6 1.9084 -2.0917 1.5004 11 6 1.2661 -3.0983 0.6355 12 8 0.1246 -2.9305 0.2515 13 7 1.9442 -4.2044 0.2705 14 6 3.2940 -4.4772 0.7891 15 6 3.2597 -5.8440 1.4833 16 6 2.7943 -6.9288 0.5085 17 1 3.5336 -7.1592 -0.2586 18 6 2.4157 -8.1684 1.3772 19 6 1.0222 -7.7846 1.9233 20 7 0.4563 -6.7809 1.0037 21 6 -0.7532 -6.1534 1.1407 22 1 -1.0727 -5.4300 0.4051 23 6 -1.5688 -6.4474 2.2247 24 7 -1.1795 -7.3289 3.1213 25 14 -3.2189 -5.5919 2.4113 26 1 -4.0686 -5.8927 1.2312 27 1 -3.8922 -6.0783 3.6422 28 1 -3.0078 -4.1252 2.5085 29 6 1.4172 -6.5731 -0.0819 30 1 1.1996 -7.2873 -0.8760 31 6 1.3658 -5.1775 -0.6632 32 1 -0.3633 0.4016 0.9461 33 1 -0.3634 0.6184 -0.8207 34 1 -0.3633 -1.0200 -0.1251 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6767 1.9564 0.8901 38 1 1.5946 -1.7146 -1.3026 39 1 1.7636 -0.1510 -2.1362 40 1 3.1251 -0.8117 -1.1991 41 1 2.5789 -3.2746 3.2289 42 1 4.0082 -4.4968 -0.0342 43 1 3.5769 -3.7053 1.5049 44 1 2.5741 -5.8030 2.3297 45 1 4.2596 -6.0882 1.8422 46 1 3.1272 -8.3015 2.1921 47 1 2.3569 -9.0691 0.7661 48 1 1.1195 -7.3595 2.9223 49 1 0.3783 -8.6635 1.9553 50 1 -1.7492 -7.5341 3.8791 51 1 0.3283 -4.9101 -0.8635 52 1 1.9277 -5.1568 -1.5971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042310336.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:59 Heat of formation + Delta-G solvation = 66.267698 kcal Electronic energy + Delta-G solvation = -33599.951498 eV Core-core repulsion = 29601.696964 eV Total energy + Delta-G solvation = -3998.254535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.49371 -39.59256 -37.81684 -36.65391 -34.84708 -32.76939 -31.36587 -30.91030 -30.40947 -28.74982 -28.31147 -27.14159 -26.98907 -24.69692 -24.16390 -22.71344 -22.44602 -22.00852 -20.07685 -19.84389 -18.40670 -18.19199 -17.62970 -16.48124 -16.31164 -15.42475 -15.01057 -14.91669 -14.65310 -14.50614 -14.28404 -13.89931 -13.85114 -13.68795 -13.52833 -13.05387 -12.85831 -12.75284 -12.40275 -12.17021 -12.00126 -11.93278 -11.61628 -11.45000 -11.35611 -11.24379 -11.17736 -11.05878 -10.89903 -10.88815 -10.76328 -10.62883 -10.31873 -10.09026 -9.83809 -9.79852 -9.62424 -9.47173 -9.40778 -9.22539 -8.53230 -8.48011 -7.99946 -6.72358 -5.59852 -2.91281 1.75059 2.44275 2.75327 3.45978 3.53023 3.55117 3.61005 3.62464 4.44764 4.63053 4.74932 5.00413 5.03647 5.08853 5.12145 5.18236 5.35770 5.43052 5.51625 5.54276 5.59628 5.66878 5.71598 5.72431 5.78043 5.81770 5.82895 5.87065 6.01006 6.02131 6.08831 6.14215 6.14832 6.16335 6.18229 6.30015 6.32157 6.42935 6.45409 6.49856 6.55117 6.63815 6.76042 6.79001 6.96564 7.16290 7.19724 7.62789 7.64196 7.67766 7.95654 8.02450 8.34476 8.85251 9.34170 9.95096 10.58896 11.52499 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.004791 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.498203 B = 5843.138168 C = 6867.159922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.014 3.986 3 C -0.134 4.134 4 C -0.139 4.139 5 C 0.135 3.865 6 N -0.298 5.298 7 N -0.469 5.469 8 H 0.441 0.559 9 C 0.096 3.904 10 C -0.264 4.264 11 C 0.602 3.398 12 O -0.524 6.524 13 N -0.589 5.589 14 C 0.108 3.892 15 C -0.122 4.122 16 C -0.101 4.101 17 H 0.075 0.925 18 C -0.144 4.144 19 C 0.179 3.821 20 N -0.588 5.588 21 C -0.208 4.208 22 H 0.083 0.917 23 C -0.009 4.009 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.294 1.294 28 H -0.283 1.283 29 C 0.154 3.846 30 H 0.025 0.975 31 C 0.115 3.885 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.185 0.815 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.043 0.957 49 H 0.040 0.960 50 H 0.248 0.752 51 H 0.096 0.904 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.028 9.629 -4.137 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.012 3.988 3 C -0.192 4.192 4 C -0.197 4.197 5 C -0.033 4.033 6 N -0.120 5.120 7 N -0.174 5.174 8 H 0.285 0.715 9 C -0.054 4.054 10 C -0.279 4.279 11 C 0.389 3.611 12 O -0.400 6.400 13 N -0.322 5.322 14 C -0.016 4.016 15 C -0.160 4.160 16 C -0.121 4.121 17 H 0.093 0.907 18 C -0.183 4.183 19 C 0.054 3.946 20 N -0.313 5.313 21 C -0.337 4.337 22 H 0.101 0.899 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.213 1.213 27 H -0.221 1.221 28 H -0.210 1.210 29 C 0.046 3.954 30 H 0.042 0.958 31 C -0.008 4.008 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.202 0.798 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.058 0.942 50 H 0.059 0.941 51 H 0.114 0.886 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.652 10.799 -3.696 17.794 hybrid contribution -0.840 -0.542 0.718 1.231 sum 12.812 10.257 -2.978 16.680 Atomic orbital electron populations 1.22136 0.92284 1.05534 1.01135 1.19026 0.96493 0.94183 0.89142 1.21798 1.00997 0.94562 1.01797 1.21893 1.00653 1.01279 0.95872 1.22232 0.95096 0.90943 0.95015 1.77035 1.22153 1.12545 1.00249 1.46032 1.46882 1.05251 1.19215 0.71527 1.23110 0.95427 0.91637 0.95271 1.20266 1.13881 0.94789 0.98973 1.17025 0.84694 0.80096 0.79251 1.90681 1.16611 1.76607 1.56143 1.47647 1.16470 1.21520 1.46528 1.21823 0.83972 0.97539 0.98257 1.21922 1.00760 0.93759 0.99543 1.22370 0.97006 0.95665 0.97077 0.90704 1.23167 0.99947 0.96528 0.98623 1.21204 0.87956 0.92427 0.92993 1.44280 1.16538 1.46515 1.23957 1.19018 0.91494 1.16762 1.06384 0.89939 1.24671 0.98685 0.99515 0.97496 1.69955 1.37243 1.36489 1.14046 0.86295 0.84041 0.79479 0.76722 1.21321 1.22052 1.20961 1.20691 0.89330 0.93261 0.92147 0.95753 1.21371 1.00589 0.88901 0.89944 0.93154 0.92566 0.88455 0.92637 0.92414 0.92255 0.91468 0.91903 0.92907 0.79787 0.92097 0.90398 0.90221 0.92280 0.92441 0.92791 0.93845 0.94159 0.94141 0.88551 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.41 37.16 0.31 -1.95 16 2 C 0.01 0.19 0.84 -155.66 -0.13 0.06 16 3 C -0.13 -1.54 7.98 37.16 0.30 -1.24 16 4 C -0.14 -1.77 8.13 37.16 0.30 -1.47 16 5 C 0.14 2.04 5.64 -82.02 -0.46 1.58 16 6 N -0.30 -4.23 11.94 33.89 0.40 -3.82 16 7 N -0.47 -5.42 7.29 30.85 0.22 -5.20 16 8 H 0.44 3.39 8.96 -182.72 -1.64 1.76 16 9 C 0.10 1.28 9.76 -16.56 -0.16 1.12 16 10 C -0.26 -4.25 4.99 -105.07 -0.52 -4.78 16 11 C 0.60 11.19 5.55 -12.52 -0.07 11.12 16 12 O -0.52 -11.56 13.21 5.28 0.07 -11.49 16 13 N -0.59 -9.94 2.96 -175.06 -0.52 -10.45 16 14 C 0.11 1.44 6.24 -3.51 -0.02 1.42 16 15 C -0.12 -1.75 5.06 -26.51 -0.13 -1.88 16 16 C -0.10 -1.60 3.68 -88.43 -0.33 -1.92 16 17 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.14 -2.51 6.33 -24.32 -0.15 -2.67 16 19 C 0.18 4.14 4.62 -2.74 -0.01 4.13 16 20 N -0.59 -14.14 3.20 -164.43 -0.53 -14.66 16 21 C -0.21 -5.73 9.70 -15.06 -0.15 -5.87 16 22 H 0.08 2.33 6.51 -52.49 -0.34 1.99 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 24 N -0.93 -27.28 10.38 55.49 0.58 -26.70 16 25 Si 0.90 23.48 29.55 -169.99 -5.02 18.46 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 28 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 29 C 0.15 2.96 2.97 -68.30 -0.20 2.76 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 C 0.12 2.07 5.69 -4.78 -0.03 2.04 16 32 H 0.05 0.76 8.13 -51.92 -0.42 0.34 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.74 5.05 -51.93 -0.26 1.48 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 38 H 0.07 1.00 5.84 -51.93 -0.30 0.70 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.19 2.15 7.78 -52.49 -0.41 1.74 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.95 4.53 -51.93 -0.24 0.71 16 44 H 0.08 1.42 6.85 -51.93 -0.36 1.06 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.04 1.12 7.04 -51.93 -0.37 0.75 16 49 H 0.04 1.06 7.56 -51.93 -0.39 0.67 16 50 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 51 H 0.10 2.03 5.52 -51.93 -0.29 1.74 16 52 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -33.39 388.65 -10.13 -43.52 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -9.63 Total: 2.40 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.56 Total: 2.09 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.16 Total: -60.84 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.46 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.39 -10.13 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042310336.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.787 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds