Wall clock time and date at job start Wed Apr 1 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 C 1.53000 * 109.46812 * 240.00197 * 2 1 3 5 5 C 1.50699 * 109.47304 * 120.00318 * 2 1 3 6 6 N 1.30451 * 125.98677 * 248.15472 * 5 2 1 7 7 N 1.39930 * 108.89710 * 180.02562 * 6 5 2 8 8 H 0.97003 * 125.75355 * 180.26349 * 7 6 5 9 9 C 1.34263 * 108.49240 * 359.97438 * 7 6 5 10 10 C 1.38042 * 107.41535 * 0.02562 * 9 7 6 11 11 C 1.47431 * 126.41454 * 180.02562 * 10 9 7 12 12 O 1.21602 * 120.00009 * 125.95005 * 11 10 9 13 13 N 1.34778 * 119.99863 * 305.94537 * 11 10 9 14 14 C 1.47151 * 121.21246 * 3.99998 * 13 11 10 15 15 C 1.53340 * 107.71620 * 122.68656 * 14 13 11 16 16 C 1.53093 * 110.49602 * 57.57152 * 15 14 13 17 17 H 1.08998 * 113.05884 * 70.86554 * 16 15 14 18 18 C 1.56031 * 106.39033 * 195.29026 * 16 15 14 19 19 C 1.54504 * 102.60884 * 78.38590 * 18 16 15 20 20 N 1.47429 * 107.15020 * 22.84054 * 19 18 16 21 21 C 1.36940 * 126.05706 * 181.66835 * 20 19 18 22 22 H 1.07999 * 120.00090 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00405 * 359.95113 * 21 20 19 24 24 N 1.31628 * 119.99818 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00388 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47038 * 59.99938 * 25 23 21 27 27 H 1.48495 * 109.47019 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46615 * 299.99972 * 25 23 21 29 29 C 1.46461 * 107.88417 * 1.62663 * 20 19 18 30 30 H 1.08995 * 108.42180 * 89.23285 * 29 20 19 31 31 C 1.46749 * 121.21400 * 184.27388 * 13 11 10 32 32 H 1.09010 * 109.46797 * 292.99874 * 1 2 3 33 33 H 1.08996 * 109.47475 * 53.00001 * 1 2 3 34 34 H 1.08997 * 109.47101 * 173.00873 * 1 2 3 35 35 H 1.09006 * 109.47045 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.47392 * 300.00210 * 3 2 1 37 37 H 1.09006 * 109.47324 * 60.00738 * 3 2 1 38 38 H 1.09000 * 109.47127 * 305.78212 * 4 2 1 39 39 H 1.09002 * 109.46903 * 65.78498 * 4 2 1 40 40 H 1.09001 * 109.46836 * 185.77945 * 4 2 1 41 41 H 1.07990 * 126.29024 * 180.02562 * 9 7 6 42 42 H 1.09004 * 109.76066 * 242.33427 * 14 13 11 43 43 H 1.09000 * 109.76395 * 3.09689 * 14 13 11 44 44 H 1.08997 * 109.39459 * 297.24720 * 15 14 13 45 45 H 1.09004 * 109.16115 * 177.74390 * 15 14 13 46 46 H 1.08994 * 110.78321 * 320.10101 * 18 16 15 47 47 H 1.09003 * 110.94000 * 196.73397 * 18 16 15 48 48 H 1.09000 * 109.89892 * 263.45746 * 19 18 16 49 49 H 1.09004 * 110.05263 * 142.30561 * 19 18 16 50 50 H 0.97002 * 119.99980 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.22943 * 352.84143 * 31 13 11 52 52 H 1.09005 * 109.22437 * 112.19798 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 2.6583 -0.1579 2.2328 7 7 2.9604 -1.1446 3.1778 8 1 3.4206 -1.0012 4.0196 9 6 2.5003 -2.3222 2.7260 10 6 1.9084 -2.0917 1.5004 11 6 1.2661 -3.0983 0.6355 12 8 0.1246 -2.9305 0.2515 13 7 1.9442 -4.2044 0.2705 14 6 3.2940 -4.4772 0.7891 15 6 3.2597 -5.8440 1.4833 16 6 2.7943 -6.9288 0.5085 17 1 3.5336 -7.1592 -0.2586 18 6 2.4157 -8.1684 1.3772 19 6 1.0222 -7.7846 1.9233 20 7 0.4563 -6.7809 1.0037 21 6 -0.7532 -6.1534 1.1407 22 1 -1.0727 -5.4300 0.4051 23 6 -1.5688 -6.4474 2.2247 24 7 -1.1795 -7.3289 3.1213 25 14 -3.2189 -5.5919 2.4113 26 1 -4.0686 -5.8927 1.2312 27 1 -3.8922 -6.0783 3.6422 28 1 -3.0078 -4.1252 2.5085 29 6 1.4172 -6.5731 -0.0819 30 1 1.1996 -7.2873 -0.8760 31 6 1.3658 -5.1775 -0.6632 32 1 -0.3633 0.4016 0.9461 33 1 -0.3634 0.6184 -0.8207 34 1 -0.3633 -1.0200 -0.1251 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6767 1.9564 0.8901 38 1 1.5946 -1.7146 -1.3026 39 1 1.7636 -0.1510 -2.1362 40 1 3.1251 -0.8117 -1.1991 41 1 2.5789 -3.2746 3.2289 42 1 4.0082 -4.4968 -0.0342 43 1 3.5769 -3.7053 1.5049 44 1 2.5741 -5.8030 2.3297 45 1 4.2596 -6.0882 1.8422 46 1 3.1272 -8.3015 2.1921 47 1 2.3569 -9.0691 0.7661 48 1 1.1195 -7.3595 2.9223 49 1 0.3783 -8.6635 1.9553 50 1 -1.7492 -7.5341 3.8791 51 1 0.3283 -4.9101 -0.8635 52 1 1.9277 -5.1568 -1.5971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042310336.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:57 Heat of formation + Delta-G solvation = 44.540920 kcal Electronic energy + Delta-G solvation = -33600.893642 eV Core-core repulsion = 29601.696964 eV Total energy + Delta-G solvation = -3999.196679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.60468 -40.98196 -39.27403 -37.72404 -36.36187 -34.58029 -32.89313 -32.01368 -31.77162 -30.17471 -29.95858 -28.13822 -28.04251 -26.45929 -25.75015 -23.90165 -23.63065 -23.26729 -21.68118 -21.23478 -19.79933 -19.27573 -18.81220 -18.37385 -17.60931 -16.90354 -16.55545 -16.11793 -16.08284 -15.80650 -15.72851 -15.43272 -15.20375 -14.96646 -14.69166 -14.37140 -14.15385 -14.07019 -13.90843 -13.56443 -13.20146 -13.13502 -13.02895 -12.93971 -12.93104 -12.62721 -12.55880 -12.48758 -12.34749 -12.22210 -12.08411 -12.04990 -11.92427 -11.60795 -11.40996 -11.33252 -11.21840 -11.06178 -10.63830 -10.62329 -10.47443 -9.70249 -9.32781 -8.74390 -7.79472 -5.07911 0.66271 1.25832 1.37423 1.40048 1.47827 1.79166 2.15485 2.35051 2.51281 3.38720 3.39998 3.59206 3.71198 3.90666 3.98820 4.00139 4.05955 4.07323 4.17942 4.33009 4.38001 4.43483 4.54183 4.57455 4.61012 4.66047 4.74202 4.77833 4.79662 4.81242 4.90492 4.93203 4.96967 5.00242 5.04985 5.07375 5.09604 5.18575 5.21073 5.23923 5.37140 5.41489 5.47553 5.54655 5.60731 5.70816 5.77233 5.86211 5.88316 6.27232 6.28469 6.56260 6.72731 7.20864 7.50435 7.89133 8.51614 9.31036 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.004791 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.498203 B = 5843.138168 C = 6867.159922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.010 3.990 3 C -0.126 4.126 4 C -0.131 4.131 5 C 0.126 3.874 6 N -0.305 5.305 7 N -0.447 5.447 8 H 0.459 0.541 9 C 0.110 3.890 10 C -0.296 4.296 11 C 0.597 3.403 12 O -0.573 6.573 13 N -0.590 5.590 14 C 0.107 3.893 15 C -0.117 4.117 16 C -0.085 4.085 17 H 0.120 0.880 18 C -0.130 4.130 19 C 0.186 3.814 20 N -0.603 5.603 21 C -0.193 4.193 22 H 0.068 0.932 23 C -0.062 4.062 24 N -0.949 5.949 25 Si 0.949 3.051 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.296 1.296 29 C 0.143 3.857 30 H 0.024 0.976 31 C 0.120 3.880 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.201 0.799 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.039 0.961 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.010 0.990 49 H -0.004 1.004 50 H 0.240 0.760 51 H 0.054 0.946 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.839 10.479 -4.941 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.008 3.992 3 C -0.183 4.183 4 C -0.189 4.189 5 C -0.041 4.041 6 N -0.128 5.128 7 N -0.154 5.154 8 H 0.307 0.693 9 C -0.042 4.042 10 C -0.311 4.311 11 C 0.386 3.614 12 O -0.453 6.453 13 N -0.322 5.322 14 C -0.015 4.015 15 C -0.155 4.155 16 C -0.104 4.104 17 H 0.138 0.862 18 C -0.168 4.168 19 C 0.062 3.938 20 N -0.328 5.328 21 C -0.323 4.323 22 H 0.086 0.914 23 C -0.254 4.254 24 N -0.601 5.601 25 Si 0.780 3.220 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.223 1.223 29 C 0.036 3.964 30 H 0.041 0.959 31 C -0.004 4.004 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.218 0.782 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.058 0.942 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.028 0.972 49 H 0.014 0.986 50 H 0.050 0.950 51 H 0.073 0.927 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.529 11.652 -4.503 21.524 hybrid contribution -2.014 -0.811 0.934 2.363 sum 15.515 10.841 -3.569 19.261 Atomic orbital electron populations 1.22052 0.93724 1.03654 1.01231 1.19113 0.95323 0.95628 0.89174 1.21727 1.01257 0.92919 1.02381 1.21816 1.00947 0.99962 0.96187 1.22445 0.95265 0.90689 0.95696 1.76998 1.22337 1.13084 1.00367 1.46038 1.45748 1.04272 1.19376 0.69287 1.23252 0.94160 0.92563 0.94241 1.20218 1.15845 0.94870 1.00122 1.17429 0.84221 0.80759 0.79003 1.90663 1.18849 1.77746 1.58053 1.47778 1.17662 1.20670 1.46049 1.22082 0.82457 0.97318 0.99634 1.21882 1.01884 0.93854 0.97852 1.22422 0.95466 0.94847 0.97672 0.86209 1.23028 0.96288 0.97751 0.99724 1.20965 0.90744 0.90150 0.91980 1.44453 1.16555 1.46348 1.25450 1.19047 0.92833 1.15287 1.05142 0.91422 1.25192 1.01140 1.00925 0.98185 1.70126 1.37666 1.37913 1.14371 0.85574 0.81964 0.77784 0.76659 1.20964 1.21811 1.22343 1.20996 0.90566 0.94010 0.90874 0.95855 1.21221 0.99186 0.88293 0.91688 0.94366 0.90537 0.91781 0.92028 0.90539 0.92982 0.94103 0.90132 0.91882 0.78219 0.88810 0.89043 0.94211 0.88125 0.89955 0.91665 0.97211 0.98598 0.95021 0.92726 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 8.41 71.98 0.61 -3.89 16 2 C 0.01 0.26 0.84 -52.93 -0.04 0.21 16 3 C -0.13 -2.63 7.98 71.98 0.57 -2.06 16 4 C -0.13 -3.19 8.13 71.98 0.59 -2.60 16 5 C 0.13 3.71 5.64 43.51 0.25 3.96 16 6 N -0.31 -8.12 11.94 -46.68 -0.56 -8.68 16 7 N -0.45 -9.32 7.29 -56.32 -0.41 -9.73 16 8 H 0.46 5.76 8.96 -213.43 -1.91 3.85 16 9 C 0.11 2.74 9.76 84.27 0.82 3.56 16 10 C -0.30 -9.33 4.99 -20.15 -0.10 -9.43 16 11 C 0.60 22.49 5.55 86.66 0.48 22.97 16 12 O -0.57 -26.72 13.21 -4.04 -0.05 -26.77 16 13 N -0.59 -19.28 2.96 -826.02 -2.45 -21.73 16 14 C 0.11 2.47 6.24 86.37 0.54 3.01 16 15 C -0.12 -2.91 5.06 30.74 0.16 -2.75 16 16 C -0.08 -2.34 3.68 -9.37 -0.03 -2.37 16 17 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 18 C -0.13 -4.19 6.33 32.16 0.20 -3.99 16 19 C 0.19 8.82 4.62 86.71 0.40 9.22 16 20 N -0.60 -29.70 3.20 -674.13 -2.15 -31.86 16 21 C -0.19 -11.09 9.70 84.03 0.81 -10.27 16 22 H 0.07 4.05 6.51 -2.91 -0.02 4.03 16 23 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 24 N -0.95 -58.37 10.38 21.65 0.22 -58.14 16 25 Si 0.95 50.52 29.55 68.60 2.03 52.54 16 26 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 28 H -0.30 -16.21 7.11 99.48 0.71 -15.51 16 29 C 0.14 5.31 2.97 44.77 0.13 5.45 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 C 0.12 4.22 5.69 85.76 0.49 4.71 16 32 H 0.04 1.19 8.13 -2.38 -0.02 1.17 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.42 5.05 -2.39 -0.01 2.41 16 35 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.16 8.13 -2.38 -0.02 1.14 16 38 H 0.04 1.21 5.84 -2.39 -0.01 1.20 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.20 4.28 7.78 -2.92 -0.02 4.25 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 1.89 4.53 -2.39 -0.01 1.88 16 44 H 0.04 1.34 6.85 -2.39 -0.02 1.32 16 45 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.08 2.29 7.97 -2.39 -0.02 2.27 16 47 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.01 0.52 7.04 -2.39 -0.02 0.50 16 49 H 0.00 -0.23 7.56 -2.39 -0.02 -0.25 16 50 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 51 H 0.05 2.40 5.52 -2.39 -0.01 2.38 16 52 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -79.57 388.65 1.99 -77.58 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -0.98 Total: 14.30 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 6.33 Total: 12.48 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -5.34 Total: -130.14 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.03 Total: 52.54 kcal Total: -79.57 1.99 -77.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042310336.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.124 kcal (2) G-P(sol) polarization free energy of solvation -79.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds