Wall clock time and date at job start Wed Apr 1 2020 04:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.50708 * 109.47148 * 119.99345 * 2 1 3 5 5 N 1.30447 * 125.98811 * 300.17672 * 4 2 1 6 6 N 1.39935 * 108.89617 * 180.26276 * 5 4 2 7 7 C 1.46499 * 125.75506 * 179.73847 * 6 5 4 8 8 C 1.34262 * 108.49086 * 359.73465 * 6 5 4 9 9 C 1.38045 * 107.41847 * 359.97438 * 8 6 5 10 10 C 1.47426 * 126.41848 * 179.97438 * 9 8 6 11 11 O 1.21603 * 119.99988 * 229.89802 * 10 9 8 12 12 N 1.34778 * 119.99666 * 49.89374 * 10 9 8 13 13 C 1.47150 * 121.21615 * 355.66555 * 12 10 9 14 14 C 1.52840 * 107.97515 * 122.69863 * 13 12 10 15 15 C 1.53087 * 110.54441 * 57.37107 * 14 13 12 16 16 H 1.08999 * 112.49159 * 70.52104 * 15 14 13 17 17 C 1.56118 * 106.35015 * 195.42452 * 15 14 13 18 18 C 1.54493 * 102.62436 * 78.36936 * 17 15 14 19 19 N 1.47436 * 107.15136 * 22.83858 * 18 17 15 20 20 C 1.36938 * 126.06324 * 181.65192 * 19 18 17 21 21 H 1.08001 * 120.00005 * 179.97438 * 20 19 18 22 22 C 1.38816 * 119.99893 * 359.96718 * 20 19 18 23 23 N 1.31615 * 119.99817 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99739 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47494 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47049 * 120.00177 * 24 22 20 27 27 H 1.48497 * 109.47377 * 240.00046 * 24 22 20 28 28 C 1.46471 * 107.87932 * 1.62219 * 19 18 17 29 29 H 1.08996 * 108.41528 * 89.23769 * 28 19 18 30 30 C 1.46759 * 121.21272 * 175.64571 * 12 10 9 31 31 H 1.09000 * 109.47517 * 300.00193 * 1 2 3 32 32 H 1.08997 * 109.47009 * 60.00762 * 1 2 3 33 33 H 1.08995 * 109.46844 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47755 * 239.99380 * 2 1 3 35 35 H 1.09007 * 109.47577 * 179.97438 * 3 2 1 36 36 H 1.09008 * 109.46997 * 299.99694 * 3 2 1 37 37 H 1.08998 * 109.47993 * 59.99432 * 3 2 1 38 38 H 1.09000 * 109.46717 * 269.99443 * 7 6 5 39 39 H 1.08994 * 109.47195 * 29.99469 * 7 6 5 40 40 H 1.08996 * 109.47045 * 149.99971 * 7 6 5 41 41 H 1.07998 * 126.29102 * 179.97438 * 8 6 5 42 42 H 1.09004 * 109.76048 * 3.08002 * 13 12 10 43 43 H 1.08999 * 109.80290 * 242.34062 * 13 12 10 44 44 H 1.08998 * 109.25630 * 177.64117 * 14 13 12 45 45 H 1.09011 * 109.25486 * 297.10585 * 14 13 12 46 46 H 1.09001 * 110.78299 * 320.08171 * 17 15 14 47 47 H 1.09001 * 110.92981 * 196.72471 * 17 15 14 48 48 H 1.09004 * 109.90345 * 263.45875 * 18 17 15 49 49 H 1.09000 * 110.05215 * 142.30052 * 18 17 15 50 50 H 0.97000 * 119.99714 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.22408 * 352.85676 * 30 12 10 52 52 H 1.09000 * 109.22732 * 112.21400 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7876 -0.3697 2.4658 6 7 2.4333 -1.2701 3.3206 7 6 2.4092 -1.2278 4.7848 8 6 3.0786 -2.1793 2.5725 9 6 2.8476 -1.8642 1.2485 10 6 3.3614 -2.5910 0.0733 11 8 3.9133 -1.9834 -0.8239 12 7 3.2195 -3.9289 -0.0065 13 6 2.6416 -4.7022 1.1041 14 6 1.4302 -5.4646 0.5679 15 6 1.8366 -6.3647 -0.6018 16 1 2.4422 -7.2134 -0.2840 17 6 0.5129 -6.7768 -1.3197 18 6 0.1726 -5.5185 -2.1489 19 7 1.4301 -4.7745 -2.3461 20 6 1.5660 -3.5807 -3.0029 21 1 2.5388 -3.1196 -3.0896 22 6 0.4533 -2.9630 -3.5573 23 7 -0.7323 -3.5247 -3.4513 24 14 0.6387 -1.3348 -4.4539 25 1 2.0640 -0.9183 -4.4342 26 1 0.1882 -1.4901 -5.8604 27 1 -0.1887 -0.3018 -3.7804 28 6 2.5084 -5.5385 -1.7143 29 1 2.9135 -6.2344 -2.4489 30 6 3.6352 -4.6677 -1.2045 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6766 1.9565 0.8899 38 1 3.2400 -0.6206 5.1444 39 1 1.4684 -0.7915 5.1202 40 1 2.5015 -2.2397 5.1790 41 1 3.6698 -3.0054 2.9392 42 1 2.3289 -4.0264 1.9002 43 1 3.3801 -5.4063 1.4873 44 1 1.0102 -6.0782 1.3648 45 1 0.6782 -4.7519 0.2288 46 1 -0.2724 -6.9852 -0.5931 47 1 0.6741 -7.6366 -1.9700 48 1 -0.5435 -4.9000 -1.6078 49 1 -0.2424 -5.8081 -3.1143 50 1 -1.5099 -3.0930 -3.8385 51 1 3.9212 -3.9591 -1.9819 52 1 4.4918 -5.2958 -0.9597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042352814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:43 Heat of formation + Delta-G solvation = 72.376731 kcal Electronic energy + Delta-G solvation = -33683.212090 eV Core-core repulsion = 29685.222463 eV Total energy + Delta-G solvation = -3997.989627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.36643 -39.57846 -37.73981 -35.58625 -34.81142 -32.74910 -32.39025 -31.25833 -30.32444 -28.79534 -28.28838 -26.91229 -26.73518 -24.63271 -24.07258 -22.59798 -22.32929 -21.74161 -20.00320 -19.78137 -18.77324 -18.21711 -16.99187 -16.47791 -16.12724 -15.56092 -15.24339 -14.75858 -14.64141 -14.43951 -14.17615 -14.08986 -13.87690 -13.52487 -13.26985 -13.17871 -12.96054 -12.66590 -12.58093 -12.44041 -12.28988 -11.93634 -11.79070 -11.56776 -11.32970 -11.20391 -11.13994 -10.86644 -10.79727 -10.73879 -10.67602 -10.63053 -10.28595 -10.01745 -9.81031 -9.75163 -9.59658 -9.44098 -9.28127 -9.13933 -8.46904 -8.39881 -7.98340 -6.69487 -5.57611 -2.88957 1.73521 2.41348 2.56954 3.35758 3.50513 3.57753 3.63988 3.79721 4.40164 4.63886 4.65365 4.86572 4.93504 5.06914 5.15720 5.17780 5.26056 5.30558 5.41657 5.54988 5.56977 5.60087 5.67639 5.71934 5.75466 5.78538 5.87369 5.88683 6.02995 6.04424 6.11935 6.19162 6.19816 6.27965 6.33021 6.34831 6.38795 6.49734 6.55810 6.60609 6.67951 6.70498 6.77587 6.83652 6.92852 7.01502 7.19887 7.68133 7.70787 7.76709 7.97420 8.03771 8.36754 8.83956 9.36050 9.97043 10.61634 11.54877 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009408 B = 0.005998 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.359680 B = 4667.334813 C = 6416.107699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.021 4.021 3 C -0.137 4.137 4 C 0.142 3.858 5 N -0.297 5.297 6 N -0.370 5.370 7 C 0.102 3.898 8 C 0.080 3.920 9 C -0.262 4.262 10 C 0.602 3.398 11 O -0.534 6.534 12 N -0.589 5.589 13 C 0.106 3.894 14 C -0.122 4.122 15 C -0.101 4.101 16 H 0.074 0.926 17 C -0.143 4.143 18 C 0.179 3.821 19 N -0.587 5.587 20 C -0.210 4.210 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.925 5.925 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.294 1.294 27 H -0.289 1.289 28 C 0.154 3.846 29 H 0.026 0.974 30 C 0.116 3.884 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.179 0.821 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.040 0.960 50 H 0.248 0.752 51 H 0.095 0.905 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.974 -1.538 17.001 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.042 4.042 3 C -0.194 4.194 4 C -0.025 4.025 5 N -0.118 5.118 6 N -0.149 5.149 7 C -0.040 4.040 8 C -0.070 4.070 9 C -0.278 4.278 10 C 0.389 3.611 11 O -0.411 6.411 12 N -0.322 5.322 13 C -0.017 4.017 14 C -0.160 4.160 15 C -0.121 4.121 16 H 0.092 0.908 17 C -0.182 4.182 18 C 0.054 3.946 19 N -0.312 5.312 20 C -0.338 4.338 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.573 5.573 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.222 1.222 27 H -0.216 1.216 28 C 0.046 3.954 29 H 0.043 0.957 30 C -0.008 4.008 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.196 0.804 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.114 0.886 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.546 -0.199 17.336 18.203 hybrid contribution 0.294 0.011 -0.792 0.845 sum 5.841 -0.188 16.544 17.546 Atomic orbital electron populations 1.21750 0.93594 1.02687 1.01485 1.19746 0.96186 0.95514 0.92735 1.21758 1.01134 0.94812 1.01741 1.22311 0.94193 0.92745 0.93252 1.77097 1.20256 1.14352 1.00120 1.48215 1.38296 1.21679 1.06697 1.21869 1.04342 1.03661 0.74081 1.22887 0.98162 0.95244 0.90699 1.20306 1.12079 1.02500 0.92865 1.17106 0.78169 0.80967 0.84853 1.90748 1.43170 1.67070 1.40094 1.47652 1.61799 1.05835 1.16872 1.21780 0.95495 0.94829 0.89605 1.21817 0.98058 0.98930 0.97168 1.22394 0.97338 0.97041 0.95355 0.90760 1.23163 0.96204 0.99872 0.98919 1.21201 0.88502 0.88113 0.96742 1.44275 1.01937 1.22210 1.62823 1.19072 0.94171 0.94881 1.25672 0.90086 1.24648 0.95454 0.98604 1.01389 1.69963 0.98013 1.38950 1.50405 0.86246 0.77755 0.84228 0.79138 1.20068 1.22163 1.21627 1.20694 0.90113 0.92193 0.92437 0.95707 1.21376 0.95970 0.95716 0.87697 0.92797 0.92094 0.92026 0.87944 0.92603 0.92092 0.92589 0.90739 0.89126 0.89441 0.80386 0.90281 0.92107 0.92418 0.90115 0.92464 0.92812 0.93771 0.94133 0.94181 0.88641 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.18 37.16 0.34 -2.14 16 2 C -0.02 -0.40 3.31 -91.77 -0.30 -0.70 16 3 C -0.14 -2.18 9.17 37.16 0.34 -1.84 16 4 C 0.14 2.55 5.77 -82.02 -0.47 2.08 16 5 N -0.30 -4.79 12.50 33.90 0.42 -4.37 16 6 N -0.37 -4.62 3.98 -67.60 -0.27 -4.89 16 7 C 0.10 0.71 11.44 59.85 0.68 1.39 16 8 C 0.08 1.02 9.15 -16.56 -0.15 0.87 16 9 C -0.26 -4.54 5.21 -105.07 -0.55 -5.09 16 10 C 0.60 11.93 7.17 -12.52 -0.09 11.85 16 11 O -0.53 -12.54 15.82 5.27 0.08 -12.46 16 12 N -0.59 -10.47 2.97 -175.36 -0.52 -10.99 16 13 C 0.11 1.48 5.99 -3.77 -0.02 1.46 16 14 C -0.12 -1.89 5.04 -26.77 -0.13 -2.03 16 15 C -0.10 -1.66 3.68 -88.38 -0.33 -1.99 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.14 -2.58 6.33 -24.28 -0.15 -2.74 16 18 C 0.18 4.25 4.62 -2.75 -0.01 4.24 16 19 N -0.59 -14.41 3.20 -164.42 -0.53 -14.93 16 20 C -0.21 -5.81 9.70 -15.06 -0.15 -5.95 16 21 H 0.08 2.32 6.51 -52.49 -0.34 1.98 16 22 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 23 N -0.92 -27.23 10.38 55.49 0.58 -26.65 16 24 Si 0.90 23.11 29.55 -169.99 -5.02 18.09 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 C 0.15 3.05 2.97 -68.30 -0.20 2.85 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 C 0.12 2.16 5.67 -4.78 -0.03 2.13 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 2.27 6.95 -51.93 -0.36 1.91 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.18 1.57 7.56 -52.49 -0.40 1.17 16 42 H 0.08 1.02 4.48 -51.93 -0.23 0.78 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.61 6.85 -51.92 -0.36 1.25 16 46 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.04 1.17 7.04 -51.93 -0.37 0.81 16 49 H 0.04 1.08 7.56 -51.93 -0.39 0.69 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.10 2.10 5.56 -51.93 -0.29 1.81 16 52 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -34.50 400.50 -9.16 -43.66 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.62 Total: 2.37 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.32 Total: 4.13 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.32 Total: -61.83 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.50 -9.16 -43.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042352814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.039 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds