Wall clock time and date at job start Wed Apr 1 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.50708 * 109.47148 * 119.99345 * 2 1 3 5 5 N 1.30447 * 125.98811 * 300.17672 * 4 2 1 6 6 N 1.39935 * 108.89617 * 180.26276 * 5 4 2 7 7 C 1.46499 * 125.75506 * 179.73847 * 6 5 4 8 8 C 1.34262 * 108.49086 * 359.73465 * 6 5 4 9 9 C 1.38045 * 107.41847 * 359.97438 * 8 6 5 10 10 C 1.47426 * 126.41848 * 179.97438 * 9 8 6 11 11 O 1.21603 * 119.99988 * 229.89802 * 10 9 8 12 12 N 1.34778 * 119.99666 * 49.89374 * 10 9 8 13 13 C 1.47150 * 121.21615 * 355.66555 * 12 10 9 14 14 C 1.52840 * 107.97515 * 122.69863 * 13 12 10 15 15 C 1.53087 * 110.54441 * 57.37107 * 14 13 12 16 16 H 1.08999 * 112.49159 * 70.52104 * 15 14 13 17 17 C 1.56118 * 106.35015 * 195.42452 * 15 14 13 18 18 C 1.54493 * 102.62436 * 78.36936 * 17 15 14 19 19 N 1.47436 * 107.15136 * 22.83858 * 18 17 15 20 20 C 1.36938 * 126.06324 * 181.65192 * 19 18 17 21 21 H 1.08001 * 120.00005 * 179.97438 * 20 19 18 22 22 C 1.38816 * 119.99893 * 359.96718 * 20 19 18 23 23 N 1.31615 * 119.99817 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99739 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47494 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47049 * 120.00177 * 24 22 20 27 27 H 1.48497 * 109.47377 * 240.00046 * 24 22 20 28 28 C 1.46471 * 107.87932 * 1.62219 * 19 18 17 29 29 H 1.08996 * 108.41528 * 89.23769 * 28 19 18 30 30 C 1.46759 * 121.21272 * 175.64571 * 12 10 9 31 31 H 1.09000 * 109.47517 * 300.00193 * 1 2 3 32 32 H 1.08997 * 109.47009 * 60.00762 * 1 2 3 33 33 H 1.08995 * 109.46844 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47755 * 239.99380 * 2 1 3 35 35 H 1.09007 * 109.47577 * 179.97438 * 3 2 1 36 36 H 1.09008 * 109.46997 * 299.99694 * 3 2 1 37 37 H 1.08998 * 109.47993 * 59.99432 * 3 2 1 38 38 H 1.09000 * 109.46717 * 269.99443 * 7 6 5 39 39 H 1.08994 * 109.47195 * 29.99469 * 7 6 5 40 40 H 1.08996 * 109.47045 * 149.99971 * 7 6 5 41 41 H 1.07998 * 126.29102 * 179.97438 * 8 6 5 42 42 H 1.09004 * 109.76048 * 3.08002 * 13 12 10 43 43 H 1.08999 * 109.80290 * 242.34062 * 13 12 10 44 44 H 1.08998 * 109.25630 * 177.64117 * 14 13 12 45 45 H 1.09011 * 109.25486 * 297.10585 * 14 13 12 46 46 H 1.09001 * 110.78299 * 320.08171 * 17 15 14 47 47 H 1.09001 * 110.92981 * 196.72471 * 17 15 14 48 48 H 1.09004 * 109.90345 * 263.45875 * 18 17 15 49 49 H 1.09000 * 110.05215 * 142.30052 * 18 17 15 50 50 H 0.97000 * 119.99714 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.22408 * 352.85676 * 30 12 10 52 52 H 1.09000 * 109.22732 * 112.21400 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7876 -0.3697 2.4658 6 7 2.4333 -1.2701 3.3206 7 6 2.4092 -1.2278 4.7848 8 6 3.0786 -2.1793 2.5725 9 6 2.8476 -1.8642 1.2485 10 6 3.3614 -2.5910 0.0733 11 8 3.9133 -1.9834 -0.8239 12 7 3.2195 -3.9289 -0.0065 13 6 2.6416 -4.7022 1.1041 14 6 1.4302 -5.4646 0.5679 15 6 1.8366 -6.3647 -0.6018 16 1 2.4422 -7.2134 -0.2840 17 6 0.5129 -6.7768 -1.3197 18 6 0.1726 -5.5185 -2.1489 19 7 1.4301 -4.7745 -2.3461 20 6 1.5660 -3.5807 -3.0029 21 1 2.5388 -3.1196 -3.0896 22 6 0.4533 -2.9630 -3.5573 23 7 -0.7323 -3.5247 -3.4513 24 14 0.6387 -1.3348 -4.4539 25 1 2.0640 -0.9183 -4.4342 26 1 0.1882 -1.4901 -5.8604 27 1 -0.1887 -0.3018 -3.7804 28 6 2.5084 -5.5385 -1.7143 29 1 2.9135 -6.2344 -2.4489 30 6 3.6352 -4.6677 -1.2045 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6766 1.9565 0.8899 38 1 3.2400 -0.6206 5.1444 39 1 1.4684 -0.7915 5.1202 40 1 2.5015 -2.2397 5.1790 41 1 3.6698 -3.0054 2.9392 42 1 2.3289 -4.0264 1.9002 43 1 3.3801 -5.4063 1.4873 44 1 1.0102 -6.0782 1.3648 45 1 0.6782 -4.7519 0.2288 46 1 -0.2724 -6.9852 -0.5931 47 1 0.6741 -7.6366 -1.9700 48 1 -0.5435 -4.9000 -1.6078 49 1 -0.2424 -5.8081 -3.1143 50 1 -1.5099 -3.0930 -3.8385 51 1 3.9212 -3.9591 -1.9819 52 1 4.4918 -5.2958 -0.9597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042352814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:42 Heat of formation + Delta-G solvation = 49.271332 kcal Electronic energy + Delta-G solvation = -33684.214016 eV Core-core repulsion = 29685.222463 eV Total energy + Delta-G solvation = -3998.991553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.52050 -41.01756 -39.28815 -36.92404 -36.36655 -34.60886 -33.43774 -32.84336 -31.73166 -30.25010 -29.98342 -28.16087 -27.84065 -26.46936 -25.66069 -23.93453 -23.67124 -22.90531 -21.70856 -21.19905 -20.13758 -19.60813 -18.42663 -18.21313 -17.38909 -16.90251 -16.61946 -16.32295 -16.01111 -15.96162 -15.67971 -15.50933 -15.45059 -15.09955 -14.53827 -14.41340 -14.24227 -14.00013 -13.92613 -13.66371 -13.45808 -13.38546 -13.18467 -13.08464 -13.02320 -12.92226 -12.64134 -12.52266 -12.45675 -12.31346 -12.22299 -12.04891 -11.99721 -11.65383 -11.63048 -11.36943 -11.23071 -11.08614 -10.74710 -10.64177 -10.25322 -9.61607 -9.32433 -8.75883 -7.80800 -5.09504 0.69099 1.24011 1.34498 1.37323 1.48383 1.51473 1.97258 2.48519 2.50177 3.34314 3.38739 3.57914 3.64819 3.91114 3.94875 3.97052 3.97920 4.11086 4.13598 4.20922 4.33999 4.40020 4.48999 4.53921 4.54367 4.57155 4.63183 4.64451 4.64800 4.71974 4.75818 4.78236 4.79606 4.89075 4.91535 4.94029 5.00316 5.06119 5.16759 5.18661 5.20355 5.22587 5.35497 5.48325 5.56847 5.69378 5.75492 5.79976 5.85226 6.01336 6.26813 6.57517 6.69709 7.19041 7.41680 7.87486 8.50299 9.30182 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009408 B = 0.005998 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.359680 B = 4667.334813 C = 6416.107699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.024 4.024 3 C -0.127 4.127 4 C 0.118 3.882 5 N -0.313 5.313 6 N -0.356 5.356 7 C 0.088 3.912 8 C 0.115 3.885 9 C -0.308 4.308 10 C 0.594 3.406 11 O -0.591 6.591 12 N -0.590 5.590 13 C 0.105 3.895 14 C -0.119 4.119 15 C -0.083 4.083 16 H 0.127 0.873 17 C -0.129 4.129 18 C 0.187 3.813 19 N -0.604 5.604 20 C -0.196 4.196 21 H 0.063 0.937 22 C -0.057 4.057 23 N -0.947 5.947 24 Si 0.939 3.061 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.288 1.288 28 C 0.141 3.859 29 H 0.028 0.972 30 C 0.119 3.881 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.230 0.770 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.003 0.997 49 H -0.003 1.003 50 H 0.241 0.759 51 H 0.049 0.951 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.614 -3.879 21.823 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.044 4.044 3 C -0.184 4.184 4 C -0.048 4.048 5 N -0.135 5.135 6 N -0.135 5.135 7 C -0.050 4.050 8 C -0.037 4.037 9 C -0.323 4.323 10 C 0.383 3.617 11 O -0.472 6.472 12 N -0.321 5.321 13 C -0.017 4.017 14 C -0.157 4.157 15 C -0.102 4.102 16 H 0.145 0.855 17 C -0.168 4.168 18 C 0.062 3.938 19 N -0.329 5.329 20 C -0.326 4.326 21 H 0.081 0.919 22 C -0.250 4.250 23 N -0.598 5.598 24 Si 0.770 3.230 25 H -0.207 1.207 26 H -0.218 1.218 27 H -0.215 1.215 28 C 0.034 3.966 29 H 0.045 0.955 30 C -0.005 4.005 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.247 0.753 42 H 0.110 0.890 43 H 0.130 0.870 44 H 0.118 0.882 45 H 0.044 0.956 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.022 0.978 49 H 0.016 0.984 50 H 0.050 0.950 51 H 0.067 0.933 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.187 -2.571 22.213 23.488 hybrid contribution -0.160 0.693 -2.184 2.297 sum 7.027 -1.878 20.029 21.309 Atomic orbital electron populations 1.21629 0.93620 1.00830 1.02217 1.19568 0.96114 0.96724 0.92027 1.21675 1.00670 0.93337 1.02758 1.22103 0.95587 0.93597 0.93477 1.76997 1.21189 1.15716 0.99619 1.48688 1.36250 1.20099 1.08426 1.22425 1.05380 1.06803 0.70438 1.23435 0.96283 0.95315 0.88670 1.20245 1.14539 1.03421 0.94068 1.17600 0.77442 0.81596 0.85077 1.90701 1.45788 1.68337 1.42380 1.47802 1.61271 1.05568 1.17463 1.22131 0.95857 0.95317 0.88368 1.21787 0.97632 0.98307 0.97972 1.22454 0.95966 0.97793 0.93960 0.85544 1.23025 0.98111 0.96806 0.98823 1.20941 0.87572 0.90119 0.95131 1.44452 1.03986 1.21537 1.62893 1.19046 0.93108 0.95877 1.24577 0.91888 1.25171 0.95610 1.01026 1.03173 1.70138 0.98135 1.39747 1.51784 0.85553 0.77088 0.81989 0.78383 1.20736 1.21788 1.21515 1.21033 0.89505 0.92234 0.93825 0.95475 1.21260 0.96832 0.94987 0.87406 0.90563 0.92633 0.95059 0.92925 0.93172 0.91629 0.90850 0.88839 0.88843 0.85366 0.75340 0.89007 0.86964 0.88223 0.95626 0.90282 0.91322 0.97835 0.98434 0.94973 0.93276 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 9.18 71.98 0.66 -4.17 16 2 C -0.02 -0.95 3.31 -11.54 -0.04 -0.99 16 3 C -0.13 -4.23 9.17 71.98 0.66 -3.57 16 4 C 0.12 4.33 5.77 43.52 0.25 4.58 16 5 N -0.31 -9.68 12.50 -46.67 -0.58 -10.26 16 6 N -0.36 -7.58 3.98 -367.79 -1.46 -9.05 16 7 C 0.09 0.77 11.44 127.77 1.46 2.23 16 8 C 0.11 2.49 9.15 84.28 0.77 3.26 16 9 C -0.31 -10.52 5.21 -20.15 -0.11 -10.62 16 10 C 0.59 24.10 7.17 86.66 0.62 24.72 16 11 O -0.59 -29.76 15.82 -4.04 -0.06 -29.83 16 12 N -0.59 -20.23 2.97 -826.98 -2.46 -22.69 16 13 C 0.10 2.43 5.99 86.20 0.52 2.95 16 14 C -0.12 -3.26 5.04 30.57 0.15 -3.10 16 15 C -0.08 -2.37 3.68 -9.34 -0.03 -2.40 16 16 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 17 C -0.13 -4.40 6.33 32.18 0.20 -4.20 16 18 C 0.19 9.28 4.62 86.71 0.40 9.68 16 19 N -0.60 -30.94 3.20 -674.12 -2.15 -33.09 16 20 C -0.20 -11.63 9.70 84.03 0.81 -10.82 16 21 H 0.06 3.92 6.51 -2.91 -0.02 3.90 16 22 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 23 N -0.95 -59.72 10.38 21.65 0.22 -59.49 16 24 Si 0.94 50.94 29.55 68.60 2.03 52.97 16 25 H -0.28 -15.39 7.11 99.48 0.71 -14.68 16 26 H -0.29 -15.44 7.11 99.48 0.71 -14.74 16 27 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 28 C 0.14 5.45 2.97 44.77 0.13 5.58 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 C 0.12 4.35 5.67 85.76 0.49 4.84 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 2.60 6.95 -2.39 -0.02 2.59 16 35 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.23 2.45 7.56 -2.91 -0.02 2.43 16 42 H 0.09 1.91 4.48 -2.39 -0.01 1.90 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.02 0.99 6.85 -2.38 -0.02 0.97 16 46 H 0.08 2.37 7.97 -2.39 -0.02 2.35 16 47 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.00 0.19 7.04 -2.39 -0.02 0.18 16 49 H 0.00 -0.15 7.56 -2.39 -0.02 -0.17 16 50 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 51 H 0.05 2.27 5.56 -2.39 -0.01 2.25 16 52 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -88.71 400.50 3.86 -84.85 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.91 Total: 11.65 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 7.42 Total: 14.94 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -6.43 Total: -134.58 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.06 Total: -29.83 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.03 Total: 52.97 kcal Total: -88.71 3.86 -84.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042352814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.120 kcal (2) G-P(sol) polarization free energy of solvation -88.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds