Wall clock time and date at job start Wed Apr 1 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47028 * 2 1 4 4 C 1.53001 * 109.46863 * 239.99984 * 2 1 3 5 5 C 1.50705 * 109.47299 * 119.99818 * 2 1 3 6 6 N 1.35376 * 126.56427 * 355.36956 * 5 2 1 7 7 H 0.96997 * 126.13213 * 359.73658 * 6 5 2 8 8 C 1.35846 * 107.72932 * 179.73631 * 6 5 2 9 9 N 1.30172 * 109.00397 * 359.97438 * 8 6 5 10 10 C 1.35757 * 108.86487 * 359.97438 * 9 8 6 11 11 C 1.47329 * 126.23279 * 180.02562 * 10 9 8 12 12 O 1.21618 * 119.99786 * 256.70993 * 11 10 9 13 13 N 1.35026 * 120.00104 * 76.71158 * 11 10 9 14 14 C 1.44783 * 119.89451 * 5.93860 * 13 11 10 15 15 C 1.51413 * 113.20532 * 266.67211 * 14 13 11 16 16 C 1.51215 * 114.25601 * 294.79411 * 15 14 13 17 17 H 1.09666 * 110.76898 * 179.53020 * 16 15 14 18 18 C 1.54143 * 108.51126 * 301.61229 * 16 15 14 19 19 C 1.54035 * 104.66264 * 91.63519 * 18 16 15 20 20 C 1.51962 * 105.55321 * 12.43471 * 19 18 16 21 21 H 1.09484 * 108.22804 * 122.31953 * 20 19 18 22 22 C 1.49143 * 119.99077 * 185.55445 * 13 11 10 23 23 N 1.47821 * 109.50264 * 4.77598 * 20 19 18 24 24 C 1.37088 * 127.15780 * 158.86359 * 23 20 19 25 25 H 1.07999 * 119.99851 * 143.86841 * 24 23 20 26 26 C 1.38809 * 119.99871 * 323.86182 * 24 23 20 27 27 N 1.31619 * 120.00087 * 159.61137 * 26 24 23 28 28 Si 1.86801 * 120.00267 * 339.61381 * 26 24 23 29 29 H 1.48494 * 109.47176 * 93.66640 * 28 26 24 30 30 H 1.48505 * 109.47021 * 213.66737 * 28 26 24 31 31 H 1.48502 * 109.46707 * 333.66489 * 28 26 24 32 32 H 1.09010 * 109.47217 * 299.99790 * 1 2 3 33 33 H 1.08995 * 109.47604 * 59.99811 * 1 2 3 34 34 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 35 35 H 1.09005 * 109.46784 * 185.19446 * 3 2 1 36 36 H 1.08993 * 109.47394 * 305.18979 * 3 2 1 37 37 H 1.09000 * 109.47185 * 65.19483 * 3 2 1 38 38 H 1.09000 * 109.46971 * 298.16071 * 4 2 1 39 39 H 1.08997 * 109.46984 * 58.16324 * 4 2 1 40 40 H 1.09001 * 109.47107 * 178.16155 * 4 2 1 41 41 H 1.08002 * 125.49888 * 179.97438 * 8 6 5 42 42 H 1.09435 * 108.34850 * 27.00997 * 14 13 11 43 43 H 1.08848 * 109.29497 * 144.51110 * 14 13 11 44 44 H 1.09312 * 108.50897 * 173.56139 * 15 14 13 45 45 H 1.09188 * 108.78733 * 56.45505 * 15 14 13 46 46 H 1.09253 * 110.73892 * 332.38892 * 18 16 15 47 47 H 1.09335 * 110.56165 * 210.59835 * 18 16 15 48 48 H 1.09053 * 110.65020 * 252.73068 * 19 18 16 49 49 H 1.09327 * 110.19552 * 131.39537 * 19 18 16 50 50 H 1.09221 * 109.48869 * 257.97001 * 22 13 11 51 51 H 1.09204 * 109.48150 * 17.31084 * 22 13 11 52 52 H 0.96996 * 120.00241 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.2794 -1.1951 2.2458 7 1 0.3133 -1.1451 2.3158 8 6 2.1197 -1.7642 3.1488 9 7 3.3439 -1.6444 2.7229 10 6 3.3323 -0.9946 1.5310 11 6 4.5094 -0.6570 0.7117 12 8 4.9335 0.4827 0.6972 13 7 5.1173 -1.6130 -0.0230 14 6 4.5372 -2.9369 -0.1064 15 6 5.0906 -3.8969 0.9254 16 6 6.5587 -4.2158 0.7530 17 1 6.9007 -4.9070 1.5327 18 6 6.7668 -4.8193 -0.6501 19 6 7.0925 -3.6119 -1.5494 20 6 7.3651 -2.4578 -0.5992 21 1 8.3724 -2.0790 -0.8005 22 6 6.3797 -1.3017 -0.7536 23 7 7.3307 -2.9478 0.7950 24 6 7.8998 -2.3584 1.8942 25 1 7.3996 -2.4028 2.8503 26 6 9.1188 -1.7048 1.7781 27 7 9.4776 -0.8162 2.6803 28 14 10.2502 -2.0863 0.3415 29 1 9.9977 -1.1201 -0.7576 30 1 11.6641 -1.9763 0.7821 31 1 9.9882 -3.4657 -0.1421 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 3.1260 1.4439 -0.0930 36 1 1.6027 1.9825 -0.8398 37 1 1.7546 1.9288 0.9328 38 1 1.7037 -1.7580 -1.2329 39 1 1.6499 -0.2268 -2.1389 40 1 3.1294 -0.6928 -1.2659 41 1 1.8203 -2.2394 4.0713 42 1 3.4570 -2.8499 0.0454 43 1 4.7060 -3.3414 -1.1028 44 1 4.5236 -4.8299 0.8707 45 1 4.9392 -3.4707 1.9192 46 1 5.8595 -5.3217 -0.9937 47 1 7.6000 -5.5272 -0.6439 48 1 6.2505 -3.3807 -2.2027 49 1 7.9790 -3.8202 -2.1544 50 1 6.1594 -1.1480 -1.8123 51 1 6.8200 -0.3887 -0.3473 52 1 10.3293 -0.3592 2.5990 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045781532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:48 Heat of formation + Delta-G solvation = 55.871825 kcal Electronic energy + Delta-G solvation = -34097.900322 eV Core-core repulsion = 30099.194988 eV Total energy + Delta-G solvation = -3998.705334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.21904 -39.70860 -37.85943 -36.78161 -34.32113 -32.73076 -32.49531 -31.93436 -29.94652 -29.22091 -27.48196 -27.35056 -27.18661 -25.89029 -23.97470 -23.19389 -22.06745 -21.50149 -20.42453 -19.78326 -19.14809 -18.17390 -17.35620 -16.89295 -16.30551 -15.49690 -15.39491 -14.98936 -14.76234 -14.65490 -14.58408 -14.06243 -13.89854 -13.62098 -13.51098 -13.33206 -12.94397 -12.68470 -12.53745 -12.40057 -12.30983 -12.08997 -11.80534 -11.56484 -11.55431 -11.48381 -11.27469 -11.18817 -11.09084 -10.94384 -10.89676 -10.60635 -10.37773 -10.04199 -9.96712 -9.88296 -9.80026 -9.53673 -9.46155 -9.18105 -8.37432 -8.23881 -7.89702 -6.69722 -5.83764 -3.24123 1.96764 2.93195 3.02150 3.32542 3.39546 3.52940 3.58553 3.76255 4.39710 4.59158 4.63876 4.73040 4.78787 4.99199 5.10787 5.22535 5.25670 5.29346 5.33535 5.42554 5.44009 5.50883 5.53395 5.59843 5.60911 5.67494 5.73012 5.77140 5.86464 5.88492 5.96805 5.99875 6.04493 6.05857 6.15526 6.18693 6.25424 6.34495 6.38680 6.44444 6.51423 6.58454 6.64358 6.72898 6.83780 6.90957 7.10588 7.27251 7.33902 8.02682 8.09377 8.12039 8.50671 8.85220 9.00122 9.80918 10.43063 11.32394 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.004420 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.024574 B = 6333.773748 C = 6535.787655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.007 3.993 3 C -0.148 4.148 4 C -0.143 4.143 5 C 0.029 3.971 6 N -0.565 5.565 7 H 0.417 0.583 8 C 0.174 3.826 9 N -0.439 5.439 10 C -0.017 4.017 11 C 0.612 3.388 12 O -0.534 6.534 13 N -0.570 5.570 14 C 0.132 3.868 15 C -0.149 4.149 16 C 0.153 3.847 17 H 0.065 0.935 18 C -0.129 4.129 19 C -0.122 4.122 20 C 0.125 3.875 21 H 0.048 0.952 22 C 0.114 3.886 23 N -0.582 5.582 24 C -0.227 4.227 25 H 0.082 0.918 26 C 0.036 3.964 27 N -0.898 5.898 28 Si 0.875 3.125 29 H -0.286 1.286 30 H -0.303 1.303 31 H -0.269 1.269 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.210 0.790 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.050 0.950 51 H 0.088 0.912 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.084 -4.318 -8.297 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.006 3.994 3 C -0.206 4.206 4 C -0.201 4.201 5 C -0.090 4.090 6 N -0.168 5.168 7 H 0.255 0.745 8 C -0.110 4.110 9 N -0.158 5.158 10 C -0.149 4.149 11 C 0.398 3.602 12 O -0.410 6.410 13 N -0.301 5.301 14 C 0.008 3.992 15 C -0.190 4.190 16 C 0.046 3.954 17 H 0.084 0.916 18 C -0.167 4.167 19 C -0.160 4.160 20 C 0.018 3.982 21 H 0.066 0.934 22 C -0.009 4.009 23 N -0.305 5.305 24 C -0.355 4.355 25 H 0.099 0.901 26 C -0.165 4.165 27 N -0.540 5.540 28 Si 0.705 3.295 29 H -0.214 1.214 30 H -0.231 1.231 31 H -0.194 1.194 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.227 0.773 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.106 0.894 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.851 -3.844 -7.707 21.639 hybrid contribution -0.470 0.040 -0.792 0.922 sum -20.321 -3.804 -8.499 22.352 Atomic orbital electron populations 1.21962 0.94239 1.01795 1.02600 1.19087 0.95003 0.95401 0.89955 1.22041 1.04062 0.92993 1.01457 1.21974 1.02543 0.99830 0.95709 1.20830 0.90899 1.04204 0.93067 1.43050 1.10424 1.45428 1.17914 0.74527 1.25186 0.85008 1.03146 0.97627 1.70829 1.20051 1.15663 1.09224 1.20307 0.92143 1.06348 0.96053 1.16872 0.80996 0.84603 0.77773 1.90741 1.64588 1.20582 1.65102 1.47621 1.24216 1.10025 1.48262 1.20609 0.95930 0.83410 0.99247 1.21967 0.98152 0.97606 1.01252 1.21149 0.90721 0.89102 0.94389 0.91649 1.22520 1.00475 0.96896 0.96837 1.22009 1.00746 0.95838 0.97403 1.21237 0.96613 0.92567 0.87823 0.93444 1.22497 0.83994 1.00854 0.93593 1.45020 1.62887 1.20035 1.02592 1.18429 0.99244 1.29679 0.88108 0.90069 1.25408 0.96752 0.97727 0.96577 1.69852 1.22627 1.24868 1.36639 0.86876 0.80419 0.79220 0.82952 1.21412 1.23079 1.19412 0.92633 0.91309 0.92524 0.89799 0.92280 0.92740 0.92481 0.91749 0.91377 0.77311 0.92626 0.91715 0.93263 0.90402 0.91929 0.92271 0.91658 0.92190 0.93185 0.89367 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.60 37.16 0.28 -0.83 16 2 C 0.01 0.08 0.80 -155.66 -0.12 -0.05 16 3 C -0.15 -1.87 8.33 37.16 0.31 -1.56 16 4 C -0.14 -1.57 8.10 37.16 0.30 -1.27 16 5 C 0.03 0.39 5.58 -81.68 -0.46 -0.07 16 6 N -0.56 -5.79 5.83 -10.11 -0.06 -5.84 16 7 H 0.42 2.60 8.06 -40.82 -0.33 2.27 16 8 C 0.17 2.15 13.04 -89.91 -1.17 0.98 16 9 N -0.44 -7.92 10.51 -11.03 -0.12 -8.04 16 10 C -0.02 -0.31 4.72 -83.09 -0.39 -0.70 16 11 C 0.61 12.87 5.12 -12.45 -0.06 12.81 16 12 O -0.53 -13.13 14.68 5.26 0.08 -13.05 16 13 N -0.57 -11.05 2.17 -174.92 -0.38 -11.43 16 14 C 0.13 2.14 4.77 -5.76 -0.03 2.12 16 15 C -0.15 -2.61 5.03 -28.43 -0.14 -2.75 16 16 C 0.15 2.99 3.83 -67.12 -0.26 2.73 16 17 H 0.07 1.33 8.20 -51.55 -0.42 0.91 16 18 C -0.13 -2.06 5.99 -25.59 -0.15 -2.21 16 19 C -0.12 -2.03 5.72 -26.72 -0.15 -2.18 16 20 C 0.12 2.65 2.33 -67.89 -0.16 2.50 16 21 H 0.05 1.14 3.35 -51.65 -0.17 0.96 16 22 C 0.11 2.36 5.92 -2.73 -0.02 2.34 16 23 N -0.58 -13.94 1.90 -156.22 -0.30 -14.24 16 24 C -0.23 -6.60 10.58 -14.99 -0.16 -6.76 16 25 H 0.08 2.64 8.06 -52.49 -0.42 2.21 16 26 C 0.04 1.07 5.45 -17.43 -0.09 0.98 16 27 N -0.90 -28.84 13.97 55.49 0.78 -28.06 16 28 Si 0.87 22.94 25.03 -169.99 -4.26 18.69 16 29 H -0.29 -7.35 6.81 56.52 0.38 -6.96 16 30 H -0.30 -8.08 7.11 56.52 0.40 -7.67 16 31 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 32 H 0.05 0.38 7.96 -51.92 -0.41 -0.04 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 1.37 5.62 -51.93 -0.29 1.08 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.93 5.79 -51.93 -0.30 0.63 16 41 H 0.21 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.06 0.84 6.65 -51.68 -0.34 0.49 16 43 H 0.06 0.93 5.46 -52.01 -0.28 0.64 16 44 H 0.05 0.72 8.16 -51.75 -0.42 0.30 16 45 H 0.08 1.61 7.32 -51.82 -0.38 1.23 16 46 H 0.06 0.82 7.71 -51.79 -0.40 0.42 16 47 H 0.06 0.94 8.17 -51.74 -0.42 0.52 16 48 H 0.06 0.92 6.45 -51.90 -0.33 0.58 16 49 H 0.06 0.96 8.17 -51.74 -0.42 0.54 16 50 H 0.05 0.86 7.96 -51.80 -0.41 0.45 16 51 H 0.09 2.16 7.23 -51.81 -0.37 1.79 16 52 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -37.36 383.59 -9.21 -46.57 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.26 Total: 3.56 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -2.48 Total: 6.05 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -0.08 Total: -67.60 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.26 Total: 18.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.36 -9.21 -46.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045781532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.442 kcal (2) G-P(sol) polarization free energy of solvation -37.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds