Wall clock time and date at job start Wed Apr 1 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47028 * 2 1 4 4 C 1.53001 * 109.46863 * 239.99984 * 2 1 3 5 5 C 1.50705 * 109.47299 * 119.99818 * 2 1 3 6 6 N 1.35376 * 126.56427 * 355.36956 * 5 2 1 7 7 H 0.96997 * 126.13213 * 359.73658 * 6 5 2 8 8 C 1.35846 * 107.72932 * 179.73631 * 6 5 2 9 9 N 1.30172 * 109.00397 * 359.97438 * 8 6 5 10 10 C 1.35757 * 108.86487 * 359.97438 * 9 8 6 11 11 C 1.47329 * 126.23279 * 180.02562 * 10 9 8 12 12 O 1.21618 * 119.99786 * 256.70993 * 11 10 9 13 13 N 1.35026 * 120.00104 * 76.71158 * 11 10 9 14 14 C 1.44783 * 119.89451 * 5.93860 * 13 11 10 15 15 C 1.51413 * 113.20532 * 266.67211 * 14 13 11 16 16 C 1.51215 * 114.25601 * 294.79411 * 15 14 13 17 17 H 1.09666 * 110.76898 * 179.53020 * 16 15 14 18 18 C 1.54143 * 108.51126 * 301.61229 * 16 15 14 19 19 C 1.54035 * 104.66264 * 91.63519 * 18 16 15 20 20 C 1.51962 * 105.55321 * 12.43471 * 19 18 16 21 21 H 1.09484 * 108.22804 * 122.31953 * 20 19 18 22 22 C 1.49143 * 119.99077 * 185.55445 * 13 11 10 23 23 N 1.47821 * 109.50264 * 4.77598 * 20 19 18 24 24 C 1.37088 * 127.15780 * 158.86359 * 23 20 19 25 25 H 1.07999 * 119.99851 * 143.86841 * 24 23 20 26 26 C 1.38809 * 119.99871 * 323.86182 * 24 23 20 27 27 N 1.31619 * 120.00087 * 159.61137 * 26 24 23 28 28 Si 1.86801 * 120.00267 * 339.61381 * 26 24 23 29 29 H 1.48494 * 109.47176 * 93.66640 * 28 26 24 30 30 H 1.48505 * 109.47021 * 213.66737 * 28 26 24 31 31 H 1.48502 * 109.46707 * 333.66489 * 28 26 24 32 32 H 1.09010 * 109.47217 * 299.99790 * 1 2 3 33 33 H 1.08995 * 109.47604 * 59.99811 * 1 2 3 34 34 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 35 35 H 1.09005 * 109.46784 * 185.19446 * 3 2 1 36 36 H 1.08993 * 109.47394 * 305.18979 * 3 2 1 37 37 H 1.09000 * 109.47185 * 65.19483 * 3 2 1 38 38 H 1.09000 * 109.46971 * 298.16071 * 4 2 1 39 39 H 1.08997 * 109.46984 * 58.16324 * 4 2 1 40 40 H 1.09001 * 109.47107 * 178.16155 * 4 2 1 41 41 H 1.08002 * 125.49888 * 179.97438 * 8 6 5 42 42 H 1.09435 * 108.34850 * 27.00997 * 14 13 11 43 43 H 1.08848 * 109.29497 * 144.51110 * 14 13 11 44 44 H 1.09312 * 108.50897 * 173.56139 * 15 14 13 45 45 H 1.09188 * 108.78733 * 56.45505 * 15 14 13 46 46 H 1.09253 * 110.73892 * 332.38892 * 18 16 15 47 47 H 1.09335 * 110.56165 * 210.59835 * 18 16 15 48 48 H 1.09053 * 110.65020 * 252.73068 * 19 18 16 49 49 H 1.09327 * 110.19552 * 131.39537 * 19 18 16 50 50 H 1.09221 * 109.48869 * 257.97001 * 22 13 11 51 51 H 1.09204 * 109.48150 * 17.31084 * 22 13 11 52 52 H 0.96996 * 120.00241 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.2794 -1.1951 2.2458 7 1 0.3133 -1.1451 2.3158 8 6 2.1197 -1.7642 3.1488 9 7 3.3439 -1.6444 2.7229 10 6 3.3323 -0.9946 1.5310 11 6 4.5094 -0.6570 0.7117 12 8 4.9335 0.4827 0.6972 13 7 5.1173 -1.6130 -0.0230 14 6 4.5372 -2.9369 -0.1064 15 6 5.0906 -3.8969 0.9254 16 6 6.5587 -4.2158 0.7530 17 1 6.9007 -4.9070 1.5327 18 6 6.7668 -4.8193 -0.6501 19 6 7.0925 -3.6119 -1.5494 20 6 7.3651 -2.4578 -0.5992 21 1 8.3724 -2.0790 -0.8005 22 6 6.3797 -1.3017 -0.7536 23 7 7.3307 -2.9478 0.7950 24 6 7.8998 -2.3584 1.8942 25 1 7.3996 -2.4028 2.8503 26 6 9.1188 -1.7048 1.7781 27 7 9.4776 -0.8162 2.6803 28 14 10.2502 -2.0863 0.3415 29 1 9.9977 -1.1201 -0.7576 30 1 11.6641 -1.9763 0.7821 31 1 9.9882 -3.4657 -0.1421 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 3.1260 1.4439 -0.0930 36 1 1.6027 1.9825 -0.8398 37 1 1.7546 1.9288 0.9328 38 1 1.7037 -1.7580 -1.2329 39 1 1.6499 -0.2268 -2.1389 40 1 3.1294 -0.6928 -1.2659 41 1 1.8203 -2.2394 4.0713 42 1 3.4570 -2.8499 0.0454 43 1 4.7060 -3.3414 -1.1028 44 1 4.5236 -4.8299 0.8707 45 1 4.9392 -3.4707 1.9192 46 1 5.8595 -5.3217 -0.9937 47 1 7.6000 -5.5272 -0.6439 48 1 6.2505 -3.3807 -2.2027 49 1 7.9790 -3.8202 -2.1544 50 1 6.1594 -1.1480 -1.8123 51 1 6.8200 -0.3887 -0.3473 52 1 10.3293 -0.3592 2.5990 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045781532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:47 Heat of formation + Delta-G solvation = 29.674398 kcal Electronic energy + Delta-G solvation = -34099.036328 eV Core-core repulsion = 30099.194988 eV Total energy + Delta-G solvation = -3999.841339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.30055 -41.23553 -39.43757 -37.68645 -35.94275 -34.66596 -33.91186 -33.33456 -31.84503 -30.36689 -28.71951 -28.21634 -28.15314 -27.45462 -25.79724 -24.74734 -23.17254 -22.69240 -21.71473 -21.20312 -20.74653 -19.43186 -18.75283 -18.47493 -17.92506 -17.21217 -16.92009 -16.19473 -16.09826 -15.89050 -15.59835 -15.52319 -15.28323 -14.92746 -14.75845 -14.64402 -14.55308 -14.45182 -13.99459 -13.70732 -13.24362 -13.21835 -13.13339 -13.07320 -13.02229 -12.78202 -12.61249 -12.53349 -12.39149 -12.36008 -12.11802 -11.96311 -11.83546 -11.70568 -11.59838 -11.35006 -11.26313 -11.00460 -10.84454 -10.75492 -10.56816 -9.46072 -9.35337 -8.71397 -8.18247 -5.53886 0.89184 1.26186 1.34138 1.47736 1.57662 2.01100 2.08461 2.37725 2.41645 3.02164 3.37866 3.53719 3.66873 3.81244 3.90032 3.92296 3.96673 4.07169 4.12189 4.22224 4.31066 4.35685 4.39245 4.43679 4.54502 4.61370 4.64904 4.71854 4.73576 4.79361 4.82752 4.87795 4.89270 4.95879 5.00392 5.05162 5.08719 5.10429 5.14638 5.22197 5.26079 5.35161 5.37554 5.39290 5.45526 5.49446 5.68679 5.80918 5.89452 6.19373 6.51118 6.63509 6.85985 7.04401 7.32244 7.56023 8.28432 9.03902 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.004420 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.024574 B = 6333.773748 C = 6535.787655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.006 3.994 3 C -0.146 4.146 4 C -0.141 4.141 5 C 0.053 3.947 6 N -0.541 5.541 7 H 0.441 0.559 8 C 0.193 3.807 9 N -0.507 5.507 10 C -0.064 4.064 11 C 0.604 3.396 12 O -0.592 6.592 13 N -0.568 5.568 14 C 0.132 3.868 15 C -0.141 4.141 16 C 0.141 3.859 17 H 0.047 0.953 18 C -0.115 4.115 19 C -0.115 4.115 20 C 0.121 3.879 21 H 0.021 0.979 22 C 0.114 3.886 23 N -0.600 5.600 24 C -0.209 4.209 25 H 0.022 0.978 26 C -0.031 4.031 27 N -0.959 5.959 28 Si 0.952 3.048 29 H -0.280 1.280 30 H -0.309 1.309 31 H -0.246 1.246 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.252 0.748 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.035 0.965 46 H 0.109 0.891 47 H 0.063 0.937 48 H 0.103 0.897 49 H 0.075 0.925 50 H 0.090 0.910 51 H 0.029 0.971 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.107 -7.442 -11.879 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.004 3.996 3 C -0.204 4.204 4 C -0.198 4.198 5 C -0.068 4.068 6 N -0.146 5.146 7 H 0.283 0.717 8 C -0.091 4.091 9 N -0.226 5.226 10 C -0.193 4.193 11 C 0.392 3.608 12 O -0.472 6.472 13 N -0.298 5.298 14 C 0.009 3.991 15 C -0.181 4.181 16 C 0.036 3.964 17 H 0.065 0.935 18 C -0.153 4.153 19 C -0.153 4.153 20 C 0.014 3.986 21 H 0.039 0.961 22 C -0.010 4.010 23 N -0.325 5.325 24 C -0.339 4.339 25 H 0.040 0.960 26 C -0.226 4.226 27 N -0.604 5.604 28 Si 0.781 3.219 29 H -0.208 1.208 30 H -0.238 1.238 31 H -0.170 1.170 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.268 0.732 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.054 0.946 46 H 0.127 0.873 47 H 0.082 0.918 48 H 0.121 0.879 49 H 0.094 0.906 50 H 0.108 0.892 51 H 0.048 0.952 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.950 -7.048 -11.328 27.415 hybrid contribution 0.627 1.049 0.459 1.306 sum -23.323 -5.999 -10.869 26.421 Atomic orbital electron populations 1.21935 0.90571 1.03469 1.03918 1.19233 0.97761 0.93646 0.88955 1.21992 1.01331 0.94928 1.02113 1.21961 1.00507 1.01039 0.96329 1.21060 0.89667 1.02211 0.93907 1.42936 1.11431 1.43913 1.16339 0.71654 1.25879 0.83701 1.01319 0.98250 1.70720 1.23517 1.18137 1.10269 1.19972 0.92601 1.09892 0.96870 1.17488 0.81740 0.84003 0.77592 1.90690 1.66554 1.23023 1.66972 1.47713 1.23293 1.11190 1.47588 1.20809 0.96524 0.81355 1.00367 1.21843 0.97226 0.99509 0.99537 1.21416 0.91047 0.87036 0.96926 0.93458 1.22475 1.03018 0.96560 0.93273 1.22039 1.03196 0.93395 0.96640 1.21472 0.95361 0.94623 0.87109 0.96120 1.22378 0.84744 0.98393 0.95478 1.45032 1.62851 1.22159 1.02411 1.18070 0.98736 1.28960 0.88139 0.96003 1.26099 0.98579 0.97734 1.00188 1.70031 1.23206 1.27129 1.40020 0.85637 0.77095 0.79987 0.79175 1.20785 1.23823 1.16962 0.91740 0.89769 0.90604 0.94260 0.89758 0.93498 0.90899 0.89638 0.94606 0.73234 0.90999 0.88302 0.89138 0.94631 0.87251 0.91777 0.87854 0.90607 0.89160 0.95178 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 7.60 71.98 0.55 -0.94 16 2 C 0.01 0.11 0.80 -52.93 -0.04 0.07 16 3 C -0.15 -3.68 8.33 71.98 0.60 -3.08 16 4 C -0.14 -2.70 8.10 71.98 0.58 -2.12 16 5 C 0.05 1.35 5.58 41.59 0.23 1.58 16 6 N -0.54 -9.58 5.83 -185.91 -1.08 -10.66 16 7 H 0.44 3.59 8.06 -92.71 -0.75 2.85 16 8 C 0.19 4.45 13.04 180.10 2.35 6.80 16 9 N -0.51 -18.80 10.51 -188.81 -1.98 -20.78 16 10 C -0.06 -2.37 4.72 40.50 0.19 -2.18 16 11 C 0.60 26.99 5.12 86.60 0.44 27.43 16 12 O -0.59 -32.06 14.68 -4.09 -0.06 -32.12 16 13 N -0.57 -22.38 2.17 -825.44 -1.79 -24.18 16 14 C 0.13 3.97 4.77 86.18 0.41 4.38 16 15 C -0.14 -4.70 5.03 29.49 0.15 -4.55 16 16 C 0.14 5.34 3.83 44.41 0.17 5.51 16 17 H 0.05 1.93 8.20 -2.03 -0.02 1.91 16 18 C -0.11 -3.12 5.99 31.33 0.19 -2.93 16 19 C -0.11 -3.28 5.72 30.60 0.18 -3.11 16 20 C 0.12 5.05 2.33 44.29 0.10 5.16 16 21 H 0.02 0.99 3.35 -2.13 -0.01 0.99 16 22 C 0.11 4.81 5.92 85.77 0.51 5.32 16 23 N -0.60 -29.49 1.90 -648.17 -1.23 -30.72 16 24 C -0.21 -13.12 10.58 84.01 0.89 -12.23 16 25 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 26 C -0.03 -1.98 5.45 84.86 0.46 -1.52 16 27 N -0.96 -66.53 13.97 21.65 0.30 -66.22 16 28 Si 0.95 50.00 25.03 68.60 1.72 51.71 16 29 H -0.28 -14.27 6.81 99.48 0.68 -13.59 16 30 H -0.31 -16.40 7.11 99.48 0.71 -15.69 16 31 H -0.25 -11.80 7.11 99.48 0.71 -11.10 16 32 H 0.06 0.59 7.96 -2.38 -0.02 0.57 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.04 1.37 5.62 -2.38 -0.01 1.35 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.03 0.93 5.79 -2.39 -0.01 0.92 16 41 H 0.25 3.25 8.06 -2.91 -0.02 3.22 16 42 H 0.07 1.96 6.65 -2.16 -0.01 1.95 16 43 H 0.10 2.29 5.46 -2.47 -0.01 2.28 16 44 H 0.09 2.28 8.16 -2.22 -0.02 2.26 16 45 H 0.03 1.50 7.32 -2.29 -0.02 1.48 16 46 H 0.11 2.04 7.71 -2.25 -0.02 2.02 16 47 H 0.06 1.72 8.17 -2.21 -0.02 1.71 16 48 H 0.10 2.21 6.45 -2.36 -0.02 2.20 16 49 H 0.08 2.01 8.17 -2.21 -0.02 1.99 16 50 H 0.09 3.00 7.96 -2.27 -0.02 2.98 16 51 H 0.03 1.59 7.23 -2.28 -0.02 1.57 16 52 H 0.26 17.05 8.31 -92.71 -0.77 16.28 16 Total: -1.00 -97.29 383.59 3.99 -93.30 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.17 Total: 16.09 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 7.96 Total: 23.59 kcal Atomic # 7 Polarization: -146.78 SS G_CDS: -5.79 Total: -152.57 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.06 Total: -32.12 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.72 Total: 51.71 kcal Total: -97.29 3.99 -93.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045781532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.974 kcal (2) G-P(sol) polarization free energy of solvation -97.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds