Wall clock time and date at job start Wed Apr 1 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46778 * 2 1 4 4 C 1.50697 * 109.47618 * 119.99572 * 2 1 3 5 5 N 1.30502 * 125.64924 * 299.96619 * 4 2 1 6 6 C 1.34127 * 109.25438 * 180.02562 * 5 4 2 7 7 C 1.34669 * 108.02080 * 359.73370 * 6 5 4 8 8 N 1.35051 * 125.64989 * 119.99964 * 4 2 1 9 9 C 1.46493 * 126.39526 * 359.97176 * 8 4 2 10 10 C 1.50698 * 109.47483 * 84.99928 * 9 8 4 11 11 O 1.21289 * 119.99775 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00337 * 179.97438 * 10 9 8 13 13 C 1.44789 * 120.18264 * 0.02562 * 12 10 9 14 14 C 1.51511 * 112.21991 * 264.53500 * 13 12 10 15 15 C 1.51315 * 113.25532 * 285.36353 * 14 13 12 16 16 H 1.08991 * 111.31685 * 185.23420 * 15 14 13 17 17 C 1.54718 * 106.47765 * 307.66593 * 15 14 13 18 18 C 1.54623 * 104.28728 * 88.99010 * 17 15 14 19 19 C 1.50866 * 105.21790 * 11.53649 * 18 17 15 20 20 H 1.09004 * 105.90377 * 122.36240 * 19 18 17 21 21 C 1.49815 * 120.17910 * 179.97438 * 12 10 9 22 22 N 1.48066 * 109.90512 * 8.03799 * 19 18 17 23 23 C 1.36936 * 127.83778 * 155.16520 * 22 19 18 24 24 H 1.07996 * 120.00169 * 23.51596 * 23 22 19 25 25 C 1.38813 * 119.99324 * 203.52090 * 23 22 19 26 26 N 1.31617 * 120.00704 * 28.41791 * 25 23 22 27 27 Si 1.86805 * 119.99750 * 208.41866 * 25 23 22 28 28 H 1.48502 * 109.47161 * 270.00488 * 27 25 23 29 29 H 1.48497 * 109.47034 * 29.99996 * 27 25 23 30 30 H 1.48491 * 109.47287 * 150.00161 * 27 25 23 31 31 H 1.08992 * 109.47507 * 299.99640 * 1 2 3 32 32 H 1.08995 * 109.47463 * 60.00525 * 1 2 3 33 33 H 1.09009 * 109.46787 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47375 * 240.00404 * 2 1 3 35 35 H 1.08998 * 109.47096 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.46949 * 300.00046 * 3 2 1 37 37 H 1.08992 * 109.46808 * 59.99931 * 3 2 1 38 38 H 1.07999 * 125.99256 * 179.97438 * 6 5 4 39 39 H 1.08002 * 126.59253 * 180.27848 * 7 6 5 40 40 H 1.08998 * 109.47449 * 324.99535 * 9 8 4 41 41 H 1.09001 * 109.47162 * 204.99975 * 9 8 4 42 42 H 1.08993 * 108.93282 * 143.82587 * 13 12 10 43 43 H 1.09002 * 108.92768 * 25.23905 * 13 12 10 44 44 H 1.09005 * 108.72762 * 164.38601 * 14 13 12 45 45 H 1.09005 * 108.72506 * 46.33927 * 14 13 12 46 46 H 1.08996 * 110.45105 * 207.83506 * 17 15 14 47 47 H 1.08999 * 110.45151 * 330.38865 * 17 15 14 48 48 H 1.09001 * 110.16753 * 252.67583 * 18 17 15 49 49 H 1.09004 * 110.53297 * 130.58397 * 18 17 15 50 50 H 1.09003 * 109.55159 * 270.57584 * 21 12 10 51 51 H 1.09000 * 109.54899 * 30.76591 * 21 12 10 52 52 H 0.97004 * 119.99396 * 5.91810 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7866 -0.3614 2.4637 6 6 2.3944 -1.2201 3.2958 7 6 3.0365 -2.1392 2.5498 8 7 2.8122 -1.8129 1.2396 9 6 3.3180 -2.5295 0.0663 10 6 4.5898 -1.8771 -0.4111 11 8 5.0301 -0.9085 0.1712 12 7 5.2380 -2.3699 -1.4851 13 6 4.7157 -3.5256 -2.1835 14 6 5.3539 -4.8165 -1.7124 15 6 6.7670 -5.0043 -2.2198 16 1 7.1621 -5.9807 -1.9397 17 6 6.7105 -4.8182 -3.7547 18 6 6.9260 -3.3013 -3.9634 19 6 7.3730 -2.7766 -2.6214 20 1 8.3412 -2.3057 -2.7923 21 6 6.5024 -1.7241 -1.9634 22 7 7.6200 -3.9054 -1.6956 23 6 8.4428 -3.9296 -0.6012 24 1 8.7037 -3.0086 -0.1013 25 6 8.9415 -5.1382 -0.1346 26 7 9.1224 -6.1411 -0.9675 27 14 9.3559 -5.3410 1.6755 28 1 10.7705 -4.9524 1.9061 29 1 8.4656 -4.4731 2.4874 30 1 9.1610 -6.7587 2.0721 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1299 1.4427 0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6765 1.9563 0.8899 38 1 2.3697 -1.1833 4.3749 39 1 3.6187 -2.9723 2.9151 40 1 2.5727 -2.4973 -0.7284 41 1 3.5199 -3.5669 0.3332 42 1 4.9022 -3.4079 -3.2509 43 1 3.6398 -3.5822 -2.0183 44 1 4.7450 -5.6533 -2.0548 45 1 5.3699 -4.8216 -0.6225 46 1 7.5045 -5.3882 -4.2370 47 1 5.7362 -5.1198 -4.1393 48 1 5.9914 -2.8267 -4.2625 49 1 7.6962 -3.1243 -4.7141 50 1 6.2627 -0.9433 -2.6853 51 1 7.0320 -1.2877 -1.1166 52 1 8.9894 -6.0109 -1.9195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045857095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:24 Heat of formation + Delta-G solvation = 64.808446 kcal Electronic energy + Delta-G solvation = -32936.957615 eV Core-core repulsion = 28938.639802 eV Total energy + Delta-G solvation = -3998.317813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.11533 -40.30045 -38.40851 -35.39741 -34.76907 -33.94363 -32.87302 -32.48760 -29.49665 -28.89380 -28.31171 -27.21509 -27.01807 -25.96444 -23.86936 -22.89922 -22.53604 -21.23891 -20.34174 -19.50024 -19.21769 -18.50715 -17.72128 -17.29847 -16.89054 -15.99562 -15.53190 -15.03158 -14.82023 -14.76224 -14.36032 -14.27409 -13.87561 -13.68639 -13.58092 -13.48426 -13.23748 -13.02513 -12.86467 -12.76098 -12.38871 -12.21149 -12.10571 -11.87624 -11.60967 -11.56138 -11.50064 -11.37398 -11.25439 -11.03293 -10.79203 -10.52257 -10.32535 -10.20519 -10.12060 -10.00570 -9.85583 -9.73260 -9.59877 -9.17164 -8.60337 -8.30170 -8.21405 -7.03154 -6.21286 -3.31758 2.07283 2.67051 2.72973 3.27078 3.31187 3.43987 3.47914 3.63465 4.33468 4.42344 4.49149 4.58495 4.64907 4.85418 4.95872 4.99414 5.04953 5.06194 5.10572 5.21987 5.23914 5.34571 5.43262 5.50570 5.55286 5.55663 5.65008 5.66368 5.79745 5.81014 5.81352 5.88228 5.89509 5.92557 5.99776 6.11581 6.13966 6.21304 6.25841 6.34785 6.41136 6.41437 6.51283 6.66613 6.79301 6.88652 6.90876 7.04253 7.22148 7.64933 7.69918 8.22361 8.31213 8.37205 8.86275 9.65772 10.30109 11.08575 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.003888 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.069301 B = 7199.747588 C = 8474.500177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.006 4.006 3 C -0.138 4.138 4 C 0.223 3.777 5 N -0.489 5.489 6 C -0.031 4.031 7 C -0.046 4.046 8 N -0.438 5.438 9 C 0.085 3.915 10 C 0.497 3.503 11 O -0.529 6.529 12 N -0.582 5.582 13 C 0.103 3.897 14 C -0.150 4.150 15 C 0.143 3.857 16 H 0.095 0.905 17 C -0.132 4.132 18 C -0.118 4.118 19 C 0.125 3.875 20 H 0.044 0.956 21 C 0.123 3.877 22 N -0.574 5.574 23 C -0.320 4.320 24 H 0.060 0.940 25 C -0.021 4.021 26 N -0.908 5.908 27 Si 1.060 2.940 28 H -0.293 1.293 29 H -0.293 1.293 30 H -0.285 1.285 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.055 0.945 51 H 0.081 0.919 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.450 5.512 -4.869 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.196 4.196 4 C -0.039 4.039 5 N -0.207 5.207 6 C -0.179 4.179 7 C -0.178 4.178 8 N -0.120 5.120 9 C -0.042 4.042 10 C 0.282 3.718 11 O -0.406 6.406 12 N -0.315 5.315 13 C -0.020 4.020 14 C -0.191 4.191 15 C 0.036 3.964 16 H 0.112 0.888 17 C -0.171 4.171 18 C -0.156 4.156 19 C 0.018 3.982 20 H 0.062 0.938 21 C 0.000 4.000 22 N -0.297 5.297 23 C -0.448 4.448 24 H 0.077 0.923 25 C -0.223 4.223 26 N -0.548 5.548 27 Si 0.889 3.111 28 H -0.220 1.220 29 H -0.219 1.219 30 H -0.211 1.211 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.185 0.815 39 H 0.189 0.811 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.100 0.900 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.976 5.532 -3.140 16.271 hybrid contribution 0.311 0.161 -1.277 1.324 sum -14.665 5.693 -4.417 16.339 Atomic orbital electron populations 1.21784 0.93233 1.01963 1.02650 1.19489 0.96225 0.96091 0.90814 1.21750 1.01816 0.93874 1.02185 1.23060 0.96793 0.88511 0.95571 1.70130 1.24751 1.26910 0.98914 1.22166 1.01892 0.94421 0.99390 1.22689 1.07612 1.04963 0.82585 1.44861 1.38095 1.23031 1.06002 1.21767 0.96201 0.97791 0.88424 1.20462 0.85785 0.84858 0.80720 1.90741 1.67340 1.27089 1.55410 1.48146 1.25171 1.29498 1.28683 1.21194 0.96176 0.86145 0.98517 1.21998 0.99472 0.95488 1.02106 1.21276 0.88749 0.96195 0.90177 0.88790 1.22773 1.00522 0.95332 0.98473 1.21857 1.00302 0.96812 0.96595 1.20466 0.96728 0.91354 0.89679 0.93812 1.22463 0.83572 0.95011 0.98953 1.44971 1.47368 1.07795 1.29539 1.19573 1.25859 0.96037 1.03302 0.92267 1.25687 0.97200 0.93548 1.05900 1.70771 1.44648 1.35053 1.04361 0.83613 0.76136 0.75816 0.75509 1.22039 1.21943 1.21078 0.91298 0.91984 0.92889 0.90812 0.92129 0.92202 0.91506 0.81482 0.81084 0.86781 0.86111 0.89481 0.92163 0.92275 0.92218 0.92023 0.91923 0.91841 0.91774 0.92694 0.90048 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.18 37.16 0.34 -0.99 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.66 9.18 37.16 0.34 -1.32 16 4 C 0.22 3.33 6.40 -155.41 -0.99 2.34 16 5 N -0.49 -7.94 11.25 -10.81 -0.12 -8.06 16 6 C -0.03 -0.47 11.87 -17.81 -0.21 -0.68 16 7 C -0.05 -0.68 11.58 -16.56 -0.19 -0.87 16 8 N -0.44 -6.49 2.24 -115.19 -0.26 -6.75 16 9 C 0.08 1.10 4.65 -5.20 -0.02 1.08 16 10 C 0.50 8.35 7.76 -10.99 -0.09 8.27 16 11 O -0.53 -11.11 16.08 5.55 0.09 -11.02 16 12 N -0.58 -9.32 2.86 -173.99 -0.50 -9.82 16 13 C 0.10 1.36 4.98 -5.71 -0.03 1.33 16 14 C -0.15 -2.40 5.01 -28.33 -0.14 -2.54 16 15 C 0.14 2.80 3.14 -66.68 -0.21 2.59 16 16 H 0.09 2.19 5.70 -51.93 -0.30 1.89 16 17 C -0.13 -2.06 6.04 -24.97 -0.15 -2.21 16 18 C -0.12 -1.74 5.80 -26.95 -0.16 -1.89 16 19 C 0.13 2.32 2.59 -68.84 -0.18 2.15 16 20 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 21 C 0.12 2.16 6.01 -2.89 -0.02 2.14 16 22 N -0.57 -12.96 2.48 -157.26 -0.39 -13.35 16 23 C -0.32 -8.54 10.10 -15.06 -0.15 -8.69 16 24 H 0.06 1.66 7.97 -52.49 -0.42 1.25 16 25 C -0.02 -0.57 5.16 -17.43 -0.09 -0.66 16 26 N -0.91 -25.73 12.42 55.49 0.69 -25.04 16 27 Si 1.06 24.98 30.00 -169.99 -5.10 19.88 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 30 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.07 0.81 6.85 -51.93 -0.36 0.45 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.17 2.20 8.06 -52.49 -0.42 1.77 16 40 H 0.11 1.11 6.55 -51.93 -0.34 0.77 16 41 H 0.12 1.43 8.10 -51.93 -0.42 1.01 16 42 H 0.09 1.06 3.92 -51.93 -0.20 0.86 16 43 H 0.06 0.60 6.20 -51.93 -0.32 0.28 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 48 H 0.06 0.78 6.13 -51.93 -0.32 0.46 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.08 1.70 7.53 -51.93 -0.39 1.31 16 52 H 0.27 7.58 6.79 -40.82 -0.28 7.30 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -33.53 398.24 -10.28 -43.81 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.44 Total: 4.69 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.25 Total: -0.35 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.58 Total: -63.01 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.10 Total: 19.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.53 -10.28 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045857095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.614 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds