Wall clock time and date at job start Wed Apr 1 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46778 * 2 1 4 4 C 1.50697 * 109.47618 * 119.99572 * 2 1 3 5 5 N 1.30502 * 125.64924 * 299.96619 * 4 2 1 6 6 C 1.34127 * 109.25438 * 180.02562 * 5 4 2 7 7 C 1.34669 * 108.02080 * 359.73370 * 6 5 4 8 8 N 1.35051 * 125.64989 * 119.99964 * 4 2 1 9 9 C 1.46493 * 126.39526 * 359.97176 * 8 4 2 10 10 C 1.50698 * 109.47483 * 84.99928 * 9 8 4 11 11 O 1.21289 * 119.99775 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00337 * 179.97438 * 10 9 8 13 13 C 1.44789 * 120.18264 * 0.02562 * 12 10 9 14 14 C 1.51511 * 112.21991 * 264.53500 * 13 12 10 15 15 C 1.51315 * 113.25532 * 285.36353 * 14 13 12 16 16 H 1.08991 * 111.31685 * 185.23420 * 15 14 13 17 17 C 1.54718 * 106.47765 * 307.66593 * 15 14 13 18 18 C 1.54623 * 104.28728 * 88.99010 * 17 15 14 19 19 C 1.50866 * 105.21790 * 11.53649 * 18 17 15 20 20 H 1.09004 * 105.90377 * 122.36240 * 19 18 17 21 21 C 1.49815 * 120.17910 * 179.97438 * 12 10 9 22 22 N 1.48066 * 109.90512 * 8.03799 * 19 18 17 23 23 C 1.36936 * 127.83778 * 155.16520 * 22 19 18 24 24 H 1.07996 * 120.00169 * 23.51596 * 23 22 19 25 25 C 1.38813 * 119.99324 * 203.52090 * 23 22 19 26 26 N 1.31617 * 120.00704 * 28.41791 * 25 23 22 27 27 Si 1.86805 * 119.99750 * 208.41866 * 25 23 22 28 28 H 1.48502 * 109.47161 * 270.00488 * 27 25 23 29 29 H 1.48497 * 109.47034 * 29.99996 * 27 25 23 30 30 H 1.48491 * 109.47287 * 150.00161 * 27 25 23 31 31 H 1.08992 * 109.47507 * 299.99640 * 1 2 3 32 32 H 1.08995 * 109.47463 * 60.00525 * 1 2 3 33 33 H 1.09009 * 109.46787 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47375 * 240.00404 * 2 1 3 35 35 H 1.08998 * 109.47096 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.46949 * 300.00046 * 3 2 1 37 37 H 1.08992 * 109.46808 * 59.99931 * 3 2 1 38 38 H 1.07999 * 125.99256 * 179.97438 * 6 5 4 39 39 H 1.08002 * 126.59253 * 180.27848 * 7 6 5 40 40 H 1.08998 * 109.47449 * 324.99535 * 9 8 4 41 41 H 1.09001 * 109.47162 * 204.99975 * 9 8 4 42 42 H 1.08993 * 108.93282 * 143.82587 * 13 12 10 43 43 H 1.09002 * 108.92768 * 25.23905 * 13 12 10 44 44 H 1.09005 * 108.72762 * 164.38601 * 14 13 12 45 45 H 1.09005 * 108.72506 * 46.33927 * 14 13 12 46 46 H 1.08996 * 110.45105 * 207.83506 * 17 15 14 47 47 H 1.08999 * 110.45151 * 330.38865 * 17 15 14 48 48 H 1.09001 * 110.16753 * 252.67583 * 18 17 15 49 49 H 1.09004 * 110.53297 * 130.58397 * 18 17 15 50 50 H 1.09003 * 109.55159 * 270.57584 * 21 12 10 51 51 H 1.09000 * 109.54899 * 30.76591 * 21 12 10 52 52 H 0.97004 * 119.99396 * 5.91810 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7866 -0.3614 2.4637 6 6 2.3944 -1.2201 3.2958 7 6 3.0365 -2.1392 2.5498 8 7 2.8122 -1.8129 1.2396 9 6 3.3180 -2.5295 0.0663 10 6 4.5898 -1.8771 -0.4111 11 8 5.0301 -0.9085 0.1712 12 7 5.2380 -2.3699 -1.4851 13 6 4.7157 -3.5256 -2.1835 14 6 5.3539 -4.8165 -1.7124 15 6 6.7670 -5.0043 -2.2198 16 1 7.1621 -5.9807 -1.9397 17 6 6.7105 -4.8182 -3.7547 18 6 6.9260 -3.3013 -3.9634 19 6 7.3730 -2.7766 -2.6214 20 1 8.3412 -2.3057 -2.7923 21 6 6.5024 -1.7241 -1.9634 22 7 7.6200 -3.9054 -1.6956 23 6 8.4428 -3.9296 -0.6012 24 1 8.7037 -3.0086 -0.1013 25 6 8.9415 -5.1382 -0.1346 26 7 9.1224 -6.1411 -0.9675 27 14 9.3559 -5.3410 1.6755 28 1 10.7705 -4.9524 1.9061 29 1 8.4656 -4.4731 2.4874 30 1 9.1610 -6.7587 2.0721 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1299 1.4427 0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6765 1.9563 0.8899 38 1 2.3697 -1.1833 4.3749 39 1 3.6187 -2.9723 2.9151 40 1 2.5727 -2.4973 -0.7284 41 1 3.5199 -3.5669 0.3332 42 1 4.9022 -3.4079 -3.2509 43 1 3.6398 -3.5822 -2.0183 44 1 4.7450 -5.6533 -2.0548 45 1 5.3699 -4.8216 -0.6225 46 1 7.5045 -5.3882 -4.2370 47 1 5.7362 -5.1198 -4.1393 48 1 5.9914 -2.8267 -4.2625 49 1 7.6962 -3.1243 -4.7141 50 1 6.2627 -0.9433 -2.6853 51 1 7.0320 -1.2877 -1.1166 52 1 8.9894 -6.0109 -1.9195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045857095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:23 Heat of formation + Delta-G solvation = 45.043745 kcal Electronic energy + Delta-G solvation = -32937.814677 eV Core-core repulsion = 28938.639802 eV Total energy + Delta-G solvation = -3999.174875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.21096 -41.63583 -39.80553 -36.29214 -36.22674 -35.12030 -34.65261 -33.85146 -31.17095 -30.02485 -29.50314 -28.25792 -28.04452 -27.39278 -25.68101 -23.97782 -23.69799 -22.36297 -21.60997 -21.14069 -20.43606 -19.66345 -19.37635 -18.56197 -18.07372 -17.30817 -16.80018 -16.34994 -16.14518 -15.87114 -15.75927 -15.71561 -15.25339 -15.06620 -14.86991 -14.61875 -14.42529 -14.34198 -14.07461 -13.85689 -13.81469 -13.46167 -13.25812 -13.01258 -12.96183 -12.79641 -12.65001 -12.59936 -12.42008 -12.13642 -12.06257 -11.98758 -11.91071 -11.84335 -11.69825 -11.44509 -11.37204 -10.99813 -10.93946 -10.56742 -10.38683 -9.66056 -9.32387 -8.92354 -8.30855 -5.37162 0.94049 1.44031 1.48637 1.53632 1.64920 1.72378 2.08986 2.17256 2.54081 3.09817 3.35024 3.38213 3.48509 3.63175 3.71573 3.79095 3.85058 3.93482 4.07010 4.08673 4.09574 4.19273 4.25879 4.32098 4.35976 4.53550 4.54420 4.55210 4.63211 4.69658 4.74893 4.79547 4.85315 4.88263 4.95437 4.98561 5.03772 5.04540 5.07401 5.18780 5.25584 5.32507 5.33824 5.40992 5.46244 5.51670 5.63984 5.71857 5.79909 6.14972 6.33175 6.43599 6.91523 7.04944 7.11504 7.66039 8.37293 8.96744 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.003888 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.069301 B = 7199.747588 C = 8474.500177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.009 4.009 3 C -0.132 4.132 4 C 0.218 3.782 5 N -0.519 5.519 6 C -0.047 4.047 7 C -0.062 4.062 8 N -0.445 5.445 9 C 0.090 3.910 10 C 0.490 3.510 11 O -0.582 6.582 12 N -0.580 5.580 13 C 0.100 3.900 14 C -0.143 4.143 15 C 0.130 3.870 16 H 0.050 0.950 17 C -0.122 4.122 18 C -0.106 4.106 19 C 0.129 3.871 20 H 0.013 0.987 21 C 0.129 3.871 22 N -0.599 5.599 23 C -0.320 4.320 24 H 0.029 0.971 25 C -0.065 4.065 26 N -0.930 5.930 27 Si 1.100 2.900 28 H -0.286 1.286 29 H -0.293 1.293 30 H -0.281 1.281 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.028 0.972 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.185 0.815 39 H 0.184 0.816 40 H 0.159 0.841 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.025 0.975 46 H 0.046 0.954 47 H 0.108 0.892 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.087 0.913 51 H 0.032 0.968 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.808 5.173 -7.447 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 C -0.191 4.191 4 C -0.045 4.045 5 N -0.238 5.238 6 C -0.193 4.193 7 C -0.194 4.194 8 N -0.127 5.127 9 C -0.036 4.036 10 C 0.277 3.723 11 O -0.462 6.462 12 N -0.312 5.312 13 C -0.022 4.022 14 C -0.183 4.183 15 C 0.024 3.976 16 H 0.068 0.932 17 C -0.160 4.160 18 C -0.144 4.144 19 C 0.021 3.979 20 H 0.031 0.969 21 C 0.005 3.995 22 N -0.323 5.323 23 C -0.449 4.449 24 H 0.047 0.953 25 C -0.263 4.263 26 N -0.572 5.572 27 Si 0.926 3.074 28 H -0.213 1.213 29 H -0.220 1.220 30 H -0.207 1.207 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.202 0.798 39 H 0.201 0.799 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.091 0.909 50 H 0.105 0.895 51 H 0.051 0.949 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.356 5.173 -5.752 19.919 hybrid contribution 1.412 0.334 -0.474 1.526 sum -16.944 5.507 -6.227 18.873 Atomic orbital electron populations 1.21730 0.91271 1.02585 1.03215 1.19710 0.97752 0.95423 0.90023 1.21698 0.99645 0.94638 1.03078 1.23725 0.96161 0.88371 0.96219 1.70121 1.25985 1.27744 0.99921 1.22581 1.01919 0.94383 1.00434 1.23010 1.07860 1.05500 0.83077 1.45024 1.38003 1.23291 1.06363 1.21952 0.95097 0.97485 0.89035 1.21184 0.86764 0.84223 0.80095 1.90727 1.68986 1.29607 1.56918 1.48232 1.24122 1.30071 1.28778 1.21471 0.98446 0.83179 0.99136 1.21888 0.97720 0.98780 0.99908 1.21420 0.90060 0.93025 0.93100 0.93203 1.22717 1.02581 0.95708 0.95011 1.21845 1.02573 0.96074 0.93911 1.20694 0.95929 0.90166 0.91064 0.96880 1.22186 0.84258 0.95345 0.97697 1.45106 1.47591 1.10104 1.29459 1.19519 1.25897 0.94827 1.04682 0.95324 1.26605 0.97787 0.93602 1.08266 1.70848 1.46949 1.35406 1.03974 0.83039 0.76236 0.75727 0.72373 1.21275 1.21968 1.20692 0.92804 0.89334 0.92228 0.89118 0.95303 0.89215 0.92716 0.79836 0.79933 0.82336 0.84676 0.87209 0.87209 0.88582 0.95622 0.93533 0.87347 0.87651 0.90930 0.89500 0.94943 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.18 71.98 0.66 -1.44 16 2 C -0.01 -0.19 3.25 -11.54 -0.04 -0.23 16 3 C -0.13 -3.01 9.18 71.98 0.66 -2.35 16 4 C 0.22 6.24 6.40 138.12 0.88 7.12 16 5 N -0.52 -16.76 11.25 -188.13 -2.12 -18.87 16 6 C -0.05 -1.40 11.87 83.52 0.99 -0.41 16 7 C -0.06 -1.82 11.58 83.09 0.96 -0.86 16 8 N -0.44 -12.50 2.24 -518.36 -1.16 -13.67 16 9 C 0.09 2.05 4.65 85.63 0.40 2.45 16 10 C 0.49 15.74 7.76 87.66 0.68 16.42 16 11 O -0.58 -24.85 16.08 -3.06 -0.05 -24.90 16 12 N -0.58 -17.20 2.86 -822.77 -2.36 -19.55 16 13 C 0.10 2.12 4.98 86.21 0.43 2.55 16 14 C -0.14 -4.13 5.01 29.56 0.15 -3.99 16 15 C 0.13 4.98 3.14 44.61 0.14 5.12 16 16 H 0.05 2.37 5.70 -2.39 -0.01 2.36 16 17 C -0.12 -3.40 6.04 31.73 0.19 -3.21 16 18 C -0.11 -2.76 5.80 30.45 0.18 -2.59 16 19 C 0.13 4.70 2.59 43.54 0.11 4.82 16 20 H 0.01 0.54 8.09 -2.39 -0.02 0.53 16 21 C 0.13 4.45 6.01 85.28 0.51 4.96 16 22 N -0.60 -27.67 2.48 -651.46 -1.62 -29.28 16 23 C -0.32 -17.95 10.10 84.03 0.85 -17.10 16 24 H 0.03 1.74 7.97 -2.91 -0.02 1.72 16 25 C -0.06 -3.64 5.16 84.86 0.44 -3.21 16 26 N -0.93 -54.53 12.42 21.65 0.27 -54.26 16 27 Si 1.10 52.45 30.00 68.60 2.06 54.51 16 28 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 29 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 30 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 1.61 6.85 -2.38 -0.02 1.59 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.18 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.16 2.14 6.55 -2.39 -0.02 2.13 16 41 H 0.14 2.74 8.10 -2.39 -0.02 2.72 16 42 H 0.11 1.91 3.92 -2.39 -0.01 1.90 16 43 H 0.11 1.37 6.20 -2.39 -0.01 1.35 16 44 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.11 2.08 7.38 -2.39 -0.02 2.06 16 48 H 0.11 1.92 6.13 -2.39 -0.01 1.90 16 49 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 50 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 51 H 0.03 1.42 7.53 -2.39 -0.02 1.41 16 52 H 0.26 15.24 6.79 -92.71 -0.63 14.61 16 Total: -1.00 -81.83 398.24 4.27 -77.56 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 1.05 Total: 20.40 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 8.20 Total: 8.07 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -6.99 Total: -135.64 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 52.45 SS G_CDS: 2.06 Total: 54.51 kcal Total: -81.83 4.27 -77.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045857095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.602 kcal (2) G-P(sol) polarization free energy of solvation -81.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds