Wall clock time and date at job start Wed Apr 1 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 C 1.53005 * 109.47196 * 120.00260 * 2 1 3 5 5 C 1.50697 * 109.46855 * 175.00063 * 4 2 1 6 6 N 1.30856 * 125.42246 * 304.69077 * 5 4 2 7 7 C 1.33312 * 109.68768 * 179.86668 * 6 5 4 8 8 C 1.36663 * 107.78730 * 0.39795 * 7 6 5 9 9 C 1.46762 * 126.84801 * 179.79737 * 8 7 6 10 10 O 1.21686 * 120.00002 * 359.95708 * 9 8 7 11 11 N 1.34773 * 120.00170 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00105 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.32160 * 35.36431 * 12 11 9 14 14 C 1.53030 * 109.32310 * 154.99936 * 12 11 9 15 15 C 1.53976 * 108.82093 * 175.68111 * 14 12 11 16 16 H 1.09007 * 112.99118 * 168.09090 * 15 14 12 17 17 C 1.55428 * 106.41651 * 293.81650 * 15 14 12 18 18 C 1.55178 * 100.34914 * 73.38071 * 17 15 14 19 19 H 1.08997 * 112.48517 * 162.66661 * 18 17 15 20 20 C 1.52987 * 109.32909 * 275.89409 * 12 11 9 21 21 N 1.47795 * 104.25253 * 40.55283 * 18 17 15 22 22 C 1.36932 * 125.85816 * 153.55000 * 21 18 17 23 23 H 1.08004 * 119.99780 * 353.89433 * 22 21 18 24 24 C 1.38812 * 120.00591 * 173.89476 * 22 21 18 25 25 N 1.31619 * 119.99284 * 6.79379 * 24 22 21 26 26 Si 1.86791 * 120.00424 * 186.79693 * 24 22 21 27 27 H 1.48505 * 109.47364 * 94.98435 * 26 24 22 28 28 H 1.48501 * 109.47387 * 214.98496 * 26 24 22 29 29 H 1.48499 * 109.47189 * 334.98504 * 26 24 22 30 30 C 1.47085 * 108.28450 * 333.53317 * 21 18 17 31 31 N 1.34496 * 125.41612 * 124.99887 * 5 4 2 32 32 H 0.97001 * 126.47267 * 359.95978 * 31 5 4 33 33 H 1.08999 * 109.46791 * 59.99890 * 1 2 3 34 34 H 1.09004 * 109.47060 * 179.97438 * 1 2 3 35 35 H 1.08993 * 109.47249 * 299.99780 * 1 2 3 36 36 H 1.09001 * 109.47086 * 240.00495 * 2 1 3 37 37 H 1.08994 * 109.47172 * 179.97438 * 3 2 1 38 38 H 1.09003 * 109.47071 * 300.00248 * 3 2 1 39 39 H 1.09006 * 109.47114 * 60.00079 * 3 2 1 40 40 H 1.08997 * 109.46385 * 294.99831 * 4 2 1 41 41 H 1.08995 * 109.46857 * 54.99816 * 4 2 1 42 42 H 1.08003 * 126.10944 * 180.13122 * 7 6 5 43 43 H 0.97006 * 120.00321 * 0.02562 * 11 9 8 44 44 H 1.08997 * 109.58175 * 295.48255 * 14 12 11 45 45 H 1.09000 * 109.57761 * 55.88124 * 14 12 11 46 46 H 1.09003 * 111.23778 * 191.15470 * 17 15 14 47 47 H 1.08998 * 111.23830 * 315.61310 * 17 15 14 48 48 H 1.09002 * 109.52820 * 304.53039 * 20 12 11 49 49 H 1.08999 * 109.52919 * 64.75366 * 20 12 11 50 50 H 0.96999 * 119.99734 * 180.02562 * 25 24 22 51 51 H 1.09005 * 109.96929 * 241.74610 * 30 21 18 52 52 H 1.09001 * 109.97671 * 120.46707 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1888 6 7 4.2250 -1.3649 0.2095 7 6 5.5287 -1.2912 0.4784 8 6 5.6704 -0.6849 1.6950 9 6 6.9285 -0.3972 2.3937 10 8 7.9905 -0.7080 1.8874 11 7 6.9077 0.2110 3.5962 12 6 8.1635 0.4977 4.2940 13 1 8.9305 0.7569 3.5642 14 6 7.9549 1.6751 5.2490 15 6 9.2484 1.8969 6.0542 16 1 9.2518 2.8384 6.6035 17 6 9.4262 0.6421 6.9540 18 6 9.8614 -0.4028 5.8925 19 1 10.3282 -1.2808 6.3388 20 6 8.6068 -0.7442 5.0696 21 7 10.7845 0.3394 5.0085 22 6 11.7960 -0.2072 4.2648 23 1 12.0375 -1.2547 4.3688 24 6 12.5110 0.5849 3.3770 25 7 12.3092 1.8852 3.3459 26 14 13.7595 -0.1943 2.2267 27 1 13.1201 -0.4689 0.9148 28 1 14.9031 0.7335 2.0354 29 1 14.2480 -1.4671 2.8153 30 6 10.4301 1.7658 5.0645 31 7 4.3933 -0.3961 2.1356 32 1 4.1555 0.0375 2.9700 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3633 0.5138 0.8899 36 1 1.8934 -0.5138 -0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 1.6767 1.9563 0.8900 40 1 1.7517 -0.1583 2.1369 41 1 1.6054 -1.7198 1.2951 42 1 6.3296 -1.6507 -0.1506 43 1 6.0611 0.4582 4.0002 44 1 7.7225 2.5731 4.6765 45 1 7.1341 1.4516 5.9305 46 1 10.2072 0.7975 7.6984 47 1 8.4854 0.3576 7.4253 48 1 7.8068 -1.0605 5.7390 49 1 8.8373 -1.5477 4.3701 50 1 12.8086 2.4387 2.7253 51 1 10.1286 2.1135 4.0763 52 1 11.2805 2.3472 5.4207 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047070430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:59 Heat of formation + Delta-G solvation = 35.248647 kcal Electronic energy + Delta-G solvation = -31325.731734 eV Core-core repulsion = 27326.132112 eV Total energy + Delta-G solvation = -3999.599622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.36859 -40.01058 -38.45351 -36.67495 -34.66913 -33.07418 -32.58380 -30.92238 -30.69062 -29.57136 -28.35344 -27.50447 -26.97066 -25.31446 -23.34918 -23.11934 -21.68740 -21.32475 -20.44211 -19.87273 -19.45372 -19.00350 -18.16311 -17.00363 -16.25990 -15.95829 -15.79712 -15.10355 -14.74954 -14.68310 -14.38693 -14.33856 -13.93782 -13.88724 -13.59827 -13.53430 -12.96754 -12.76501 -12.75604 -12.64613 -12.28757 -12.03849 -11.84953 -11.78541 -11.58335 -11.45056 -11.30403 -11.26503 -11.04785 -10.72233 -10.65397 -10.57420 -10.38861 -10.28216 -9.99241 -9.94581 -9.77942 -9.70249 -9.52571 -9.33472 -8.76254 -8.51010 -8.47775 -6.76498 -5.64053 -2.95343 1.28926 2.66560 2.75717 3.32589 3.49822 3.51675 3.55614 3.57196 4.05480 4.38133 4.54746 4.59173 4.68518 4.85100 4.98209 5.14344 5.19590 5.20103 5.23380 5.29340 5.35506 5.37450 5.45496 5.51642 5.54863 5.61922 5.63419 5.69643 5.79165 5.85055 5.85541 5.94451 6.00370 6.02924 6.03466 6.04611 6.09663 6.19910 6.47886 6.54036 6.59013 6.62977 6.81672 6.85865 6.96698 6.99050 7.05840 7.59008 7.64416 7.65136 7.84753 7.88834 8.31991 8.42670 9.29741 9.90380 10.56129 11.48414 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.002656 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.066193 B =10539.819212 C =11565.062580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.033 4.033 5 C 0.236 3.764 6 N -0.491 5.491 7 C 0.065 3.935 8 C -0.079 4.079 9 C 0.585 3.415 10 O -0.504 6.504 11 N -0.726 5.726 12 C 0.148 3.852 13 H 0.118 0.882 14 C -0.111 4.111 15 C -0.119 4.119 16 H 0.082 0.918 17 C -0.128 4.128 18 C 0.157 3.843 19 H 0.066 0.934 20 C -0.135 4.135 21 N -0.595 5.595 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.921 5.921 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.293 1.293 29 H -0.282 1.282 30 C 0.179 3.821 31 N -0.552 5.552 32 H 0.418 0.582 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.183 0.817 43 H 0.382 0.618 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.042 0.958 49 H 0.061 0.939 50 H 0.251 0.749 51 H 0.049 0.951 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.577 -0.771 1.609 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.072 4.072 5 C -0.028 4.028 6 N -0.211 5.211 7 C -0.088 4.088 8 C -0.195 4.195 9 C 0.369 3.631 10 O -0.377 6.377 11 N -0.376 5.376 12 C 0.045 3.955 13 H 0.136 0.864 14 C -0.149 4.149 15 C -0.138 4.138 16 H 0.101 0.899 17 C -0.167 4.167 18 C 0.049 3.951 19 H 0.084 0.916 20 C -0.176 4.176 21 N -0.319 5.319 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.201 4.201 25 N -0.569 5.569 26 Si 0.738 3.262 27 H -0.215 1.215 28 H -0.220 1.220 29 H -0.208 1.208 30 C 0.055 3.945 31 N -0.158 5.158 32 H 0.256 0.744 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.201 0.799 43 H 0.214 0.786 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.079 0.921 50 H 0.061 0.939 51 H 0.067 0.933 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.863 -1.270 0.345 23.899 hybrid contribution 0.468 0.343 0.695 0.905 sum -23.395 -0.927 1.039 23.436 Atomic orbital electron populations 1.21842 0.94636 1.01971 1.02005 1.21071 0.95518 0.96324 0.97932 1.21863 1.01304 0.95680 1.01721 1.20211 0.84559 1.02669 0.99730 1.23315 0.94581 0.98486 0.86407 1.70130 1.03931 1.21334 1.25711 1.22662 0.93672 0.98811 0.93681 1.21435 0.84353 1.13430 1.00313 1.16881 0.86640 0.78609 0.80952 1.90975 1.29509 1.51237 1.65987 1.46147 1.10096 1.61564 1.19804 1.21255 0.84650 0.94371 0.95226 0.86375 1.21962 0.98044 0.97388 0.97541 1.22836 0.96147 0.97434 0.97423 0.89947 1.22990 0.99808 0.96568 0.97289 1.21508 0.89306 0.94285 0.90020 0.91640 1.22600 0.98419 0.97584 0.99023 1.44611 1.34391 1.02127 1.50812 1.19003 1.07611 0.93988 1.14478 0.90581 1.24747 1.00215 0.95631 0.99476 1.69948 1.44578 1.02930 1.39425 0.86163 0.80375 0.77988 0.81653 1.21491 1.21986 1.20750 1.21327 0.92055 0.85826 0.95339 1.43259 1.06261 1.46861 1.19380 0.74365 0.92293 0.92405 0.92691 0.89496 0.92720 0.92400 0.92920 0.90282 0.88822 0.79948 0.78555 0.92174 0.92933 0.91819 0.92292 0.93972 0.92057 0.93910 0.93264 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 2 C -0.09 -0.60 2.89 -90.62 -0.26 -0.87 16 3 C -0.15 -1.08 9.01 37.16 0.33 -0.75 16 4 C -0.03 -0.21 5.32 -27.88 -0.15 -0.36 16 5 C 0.24 2.39 6.37 -155.62 -0.99 1.40 16 6 N -0.49 -6.50 11.10 -10.58 -0.12 -6.62 16 7 C 0.06 0.94 11.66 -17.48 -0.20 0.74 16 8 C -0.08 -1.11 7.08 -82.14 -0.58 -1.69 16 9 C 0.58 10.00 7.74 -12.82 -0.10 9.90 16 10 O -0.50 -11.32 16.57 5.20 0.09 -11.23 16 11 N -0.73 -10.67 5.07 -55.08 -0.28 -10.95 16 12 C 0.15 2.66 2.07 -67.92 -0.14 2.52 16 13 H 0.12 2.84 5.39 -51.93 -0.28 2.56 16 14 C -0.11 -1.70 4.96 -26.21 -0.13 -1.83 16 15 C -0.12 -2.07 4.33 -87.93 -0.38 -2.45 16 16 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 17 C -0.13 -2.14 6.18 -24.29 -0.15 -2.29 16 18 C 0.16 3.16 4.30 -65.61 -0.28 2.88 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 20 C -0.13 -2.50 5.27 -26.28 -0.14 -2.63 16 21 N -0.59 -14.81 2.43 -161.37 -0.39 -15.20 16 22 C -0.22 -6.28 10.28 -15.06 -0.15 -6.44 16 23 H 0.08 2.12 7.84 -52.48 -0.41 1.70 16 24 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 25 N -0.92 -27.45 10.40 55.49 0.58 -26.87 16 26 Si 0.91 23.21 29.56 -169.99 -5.02 18.18 16 27 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 29 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 30 C 0.18 4.21 4.10 -2.83 -0.01 4.20 16 31 N -0.55 -5.39 6.07 -7.02 -0.04 -5.43 16 32 H 0.42 2.64 8.32 -40.82 -0.34 2.30 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.05 0.52 7.38 -51.93 -0.38 0.13 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.18 2.60 8.06 -52.48 -0.42 2.18 16 43 H 0.38 4.03 7.84 -40.82 -0.32 3.71 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.65 7.97 -51.93 -0.41 0.24 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 48 H 0.04 0.66 8.00 -51.93 -0.42 0.24 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 51 H 0.05 1.30 6.02 -51.93 -0.31 0.99 16 52 H 0.04 1.08 7.56 -51.93 -0.39 0.69 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -34.53 404.94 -10.90 -45.43 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.72 Total: 4.87 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -3.09 Total: 1.71 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.25 Total: -65.07 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.53 -10.90 -45.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047070430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.683 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds