Wall clock time and date at job start Wed Apr 1 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 C 1.53005 * 109.47196 * 120.00260 * 2 1 3 5 5 C 1.50697 * 109.46855 * 175.00063 * 4 2 1 6 6 N 1.30856 * 125.42246 * 304.69077 * 5 4 2 7 7 C 1.33312 * 109.68768 * 179.86668 * 6 5 4 8 8 C 1.36663 * 107.78730 * 0.39795 * 7 6 5 9 9 C 1.46762 * 126.84801 * 179.79737 * 8 7 6 10 10 O 1.21686 * 120.00002 * 359.95708 * 9 8 7 11 11 N 1.34773 * 120.00170 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00105 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.32160 * 35.36431 * 12 11 9 14 14 C 1.53030 * 109.32310 * 154.99936 * 12 11 9 15 15 C 1.53976 * 108.82093 * 175.68111 * 14 12 11 16 16 H 1.09007 * 112.99118 * 168.09090 * 15 14 12 17 17 C 1.55428 * 106.41651 * 293.81650 * 15 14 12 18 18 C 1.55178 * 100.34914 * 73.38071 * 17 15 14 19 19 H 1.08997 * 112.48517 * 162.66661 * 18 17 15 20 20 C 1.52987 * 109.32909 * 275.89409 * 12 11 9 21 21 N 1.47795 * 104.25253 * 40.55283 * 18 17 15 22 22 C 1.36932 * 125.85816 * 153.55000 * 21 18 17 23 23 H 1.08004 * 119.99780 * 353.89433 * 22 21 18 24 24 C 1.38812 * 120.00591 * 173.89476 * 22 21 18 25 25 N 1.31619 * 119.99284 * 6.79379 * 24 22 21 26 26 Si 1.86791 * 120.00424 * 186.79693 * 24 22 21 27 27 H 1.48505 * 109.47364 * 94.98435 * 26 24 22 28 28 H 1.48501 * 109.47387 * 214.98496 * 26 24 22 29 29 H 1.48499 * 109.47189 * 334.98504 * 26 24 22 30 30 C 1.47085 * 108.28450 * 333.53317 * 21 18 17 31 31 N 1.34496 * 125.41612 * 124.99887 * 5 4 2 32 32 H 0.97001 * 126.47267 * 359.95978 * 31 5 4 33 33 H 1.08999 * 109.46791 * 59.99890 * 1 2 3 34 34 H 1.09004 * 109.47060 * 179.97438 * 1 2 3 35 35 H 1.08993 * 109.47249 * 299.99780 * 1 2 3 36 36 H 1.09001 * 109.47086 * 240.00495 * 2 1 3 37 37 H 1.08994 * 109.47172 * 179.97438 * 3 2 1 38 38 H 1.09003 * 109.47071 * 300.00248 * 3 2 1 39 39 H 1.09006 * 109.47114 * 60.00079 * 3 2 1 40 40 H 1.08997 * 109.46385 * 294.99831 * 4 2 1 41 41 H 1.08995 * 109.46857 * 54.99816 * 4 2 1 42 42 H 1.08003 * 126.10944 * 180.13122 * 7 6 5 43 43 H 0.97006 * 120.00321 * 0.02562 * 11 9 8 44 44 H 1.08997 * 109.58175 * 295.48255 * 14 12 11 45 45 H 1.09000 * 109.57761 * 55.88124 * 14 12 11 46 46 H 1.09003 * 111.23778 * 191.15470 * 17 15 14 47 47 H 1.08998 * 111.23830 * 315.61310 * 17 15 14 48 48 H 1.09002 * 109.52820 * 304.53039 * 20 12 11 49 49 H 1.08999 * 109.52919 * 64.75366 * 20 12 11 50 50 H 0.96999 * 119.99734 * 180.02562 * 25 24 22 51 51 H 1.09005 * 109.96929 * 241.74610 * 30 21 18 52 52 H 1.09001 * 109.97671 * 120.46707 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1888 6 7 4.2250 -1.3649 0.2095 7 6 5.5287 -1.2912 0.4784 8 6 5.6704 -0.6849 1.6950 9 6 6.9285 -0.3972 2.3937 10 8 7.9905 -0.7080 1.8874 11 7 6.9077 0.2110 3.5962 12 6 8.1635 0.4977 4.2940 13 1 8.9305 0.7569 3.5642 14 6 7.9549 1.6751 5.2490 15 6 9.2484 1.8969 6.0542 16 1 9.2518 2.8384 6.6035 17 6 9.4262 0.6421 6.9540 18 6 9.8614 -0.4028 5.8925 19 1 10.3282 -1.2808 6.3388 20 6 8.6068 -0.7442 5.0696 21 7 10.7845 0.3394 5.0085 22 6 11.7960 -0.2072 4.2648 23 1 12.0375 -1.2547 4.3688 24 6 12.5110 0.5849 3.3770 25 7 12.3092 1.8852 3.3459 26 14 13.7595 -0.1943 2.2267 27 1 13.1201 -0.4689 0.9148 28 1 14.9031 0.7335 2.0354 29 1 14.2480 -1.4671 2.8153 30 6 10.4301 1.7658 5.0645 31 7 4.3933 -0.3961 2.1356 32 1 4.1555 0.0375 2.9700 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3633 0.5138 0.8899 36 1 1.8934 -0.5138 -0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 1.6767 1.9563 0.8900 40 1 1.7517 -0.1583 2.1369 41 1 1.6054 -1.7198 1.2951 42 1 6.3296 -1.6507 -0.1506 43 1 6.0611 0.4582 4.0002 44 1 7.7225 2.5731 4.6765 45 1 7.1341 1.4516 5.9305 46 1 10.2072 0.7975 7.6984 47 1 8.4854 0.3576 7.4253 48 1 7.8068 -1.0605 5.7390 49 1 8.8373 -1.5477 4.3701 50 1 12.8086 2.4387 2.7253 51 1 10.1286 2.1135 4.0763 52 1 11.2805 2.3472 5.4207 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047070430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:57 Heat of formation + Delta-G solvation = 11.540354 kcal Electronic energy + Delta-G solvation = -31326.759802 eV Core-core repulsion = 27326.132112 eV Total energy + Delta-G solvation = -4000.627691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.34970 -41.49551 -39.92853 -37.23718 -36.23110 -34.81038 -33.77781 -32.38634 -31.93308 -31.09723 -29.85303 -28.01525 -27.77308 -27.21050 -24.96754 -24.51027 -22.81837 -22.17369 -21.68302 -21.25008 -20.79299 -20.16729 -19.41128 -18.92437 -17.44395 -17.29716 -16.82362 -16.54668 -16.17362 -15.90853 -15.76841 -15.40052 -15.28080 -14.95738 -14.87017 -14.55189 -14.47998 -14.15579 -13.78901 -13.47962 -13.39115 -13.37012 -13.25361 -13.05905 -13.04391 -12.75589 -12.65726 -12.54448 -12.17620 -12.02623 -11.90270 -11.81358 -11.67804 -11.62460 -11.51668 -11.31803 -11.22735 -11.20738 -11.06228 -10.85875 -10.67699 -10.16401 -9.55441 -8.82286 -7.85349 -5.15131 0.19989 1.37146 1.43567 1.47981 1.72325 1.75747 2.10444 2.25291 2.48048 3.27934 3.34131 3.65054 3.73772 3.81153 3.83523 3.92897 4.03730 4.07206 4.10564 4.30548 4.36476 4.37383 4.40691 4.50954 4.56270 4.59886 4.65669 4.71166 4.77604 4.81043 4.82702 4.84718 4.92476 5.04727 5.09095 5.11376 5.18648 5.26019 5.32730 5.32940 5.34834 5.37385 5.47580 5.48692 5.50110 5.55329 5.61860 5.73553 5.84055 6.23147 6.26089 6.46352 6.85809 7.14214 7.16113 7.82836 8.46607 9.25164 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.002656 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.066193 B =10539.819212 C =11565.062580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.033 4.033 5 C 0.259 3.741 6 N -0.519 5.519 7 C 0.050 3.950 8 C -0.090 4.090 9 C 0.585 3.415 10 O -0.572 6.572 11 N -0.704 5.704 12 C 0.154 3.846 13 H 0.049 0.951 14 C -0.100 4.100 15 C -0.106 4.106 16 H 0.112 0.888 17 C -0.110 4.110 18 C 0.140 3.860 19 H 0.063 0.937 20 C -0.123 4.123 21 N -0.614 5.614 22 C -0.227 4.227 23 H 0.072 0.928 24 C -0.064 4.064 25 N -0.946 5.946 26 Si 0.961 3.039 27 H -0.300 1.300 28 H -0.290 1.290 29 H -0.267 1.267 30 C 0.187 3.813 31 N -0.532 5.532 32 H 0.438 0.562 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.169 0.831 43 H 0.410 0.590 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.018 0.982 50 H 0.243 0.757 51 H 0.007 0.993 52 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.232 -0.667 4.696 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.071 4.071 5 C -0.006 4.006 6 N -0.239 5.239 7 C -0.104 4.104 8 C -0.207 4.207 9 C 0.372 3.628 10 O -0.450 6.450 11 N -0.355 5.355 12 C 0.050 3.950 13 H 0.067 0.933 14 C -0.138 4.138 15 C -0.126 4.126 16 H 0.130 0.870 17 C -0.148 4.148 18 C 0.033 3.967 19 H 0.081 0.919 20 C -0.164 4.164 21 N -0.339 5.339 22 C -0.357 4.357 23 H 0.090 0.910 24 C -0.257 4.257 25 N -0.596 5.596 26 Si 0.791 3.209 27 H -0.228 1.228 28 H -0.216 1.216 29 H -0.192 1.192 30 C 0.062 3.938 31 N -0.139 5.139 32 H 0.280 0.720 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.187 0.813 43 H 0.246 0.754 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.081 0.919 47 H 0.127 0.873 48 H 0.107 0.893 49 H 0.037 0.963 50 H 0.052 0.948 51 H 0.025 0.975 52 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -28.591 -1.161 3.521 28.831 hybrid contribution 1.816 0.258 -0.317 1.862 sum -26.775 -0.903 3.204 26.981 Atomic orbital electron populations 1.21795 0.92792 1.02635 1.02705 1.21022 0.96928 0.95584 0.97126 1.21861 0.99496 0.96400 1.02687 1.20502 0.81390 1.04188 1.01056 1.24084 0.96011 0.95500 0.84983 1.70144 1.03299 1.23050 1.27415 1.22664 0.94371 0.99227 0.94112 1.20771 0.84716 1.14991 1.00215 1.17247 0.86756 0.77638 0.81208 1.90946 1.32267 1.54126 1.67687 1.45797 1.10396 1.60401 1.18913 1.20895 0.84322 0.95513 0.94257 0.93306 1.21911 0.98399 0.96031 0.97453 1.22796 0.94059 0.99442 0.96276 0.87026 1.22946 1.02074 0.93965 0.95785 1.21875 0.88951 0.95140 0.90702 0.91919 1.22431 0.98967 0.96428 0.98578 1.44842 1.34453 1.03498 1.51075 1.19294 1.08005 0.93856 1.14504 0.91044 1.25463 1.02696 0.96250 1.01315 1.70154 1.45628 1.03797 1.39972 0.85294 0.78451 0.77864 0.79274 1.22824 1.21639 1.19173 1.21081 0.93163 0.84523 0.95055 1.43060 1.04326 1.46378 1.20124 0.71952 0.92481 0.91784 0.91149 0.91903 0.95377 0.92503 0.91008 0.86685 0.87317 0.81330 0.75379 0.91673 0.87382 0.91878 0.87296 0.89321 0.96270 0.94812 0.97497 0.98380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.19 71.98 0.66 -0.29 16 2 C -0.09 -0.96 2.89 -10.79 -0.03 -0.99 16 3 C -0.15 -1.83 9.01 71.98 0.65 -1.18 16 4 C -0.03 -0.30 5.32 29.85 0.16 -0.14 16 5 C 0.26 4.67 6.37 138.20 0.88 5.55 16 6 N -0.52 -13.60 11.10 -187.40 -2.08 -15.68 16 7 C 0.05 1.52 11.66 84.10 0.98 2.50 16 8 C -0.09 -2.51 7.08 40.01 0.28 -2.22 16 9 C 0.58 20.55 7.74 86.47 0.67 21.22 16 10 O -0.57 -27.79 16.57 -4.30 -0.07 -27.86 16 11 N -0.70 -19.66 5.07 -446.39 -2.26 -21.92 16 12 C 0.15 5.45 2.07 45.00 0.09 5.55 16 13 H 0.05 2.49 5.39 -2.39 -0.01 2.47 16 14 C -0.10 -2.68 4.96 30.93 0.15 -2.53 16 15 C -0.11 -3.43 4.33 -9.05 -0.04 -3.47 16 16 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 17 C -0.11 -3.22 6.18 32.18 0.20 -3.02 16 18 C 0.14 5.51 4.30 45.78 0.20 5.70 16 19 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 20 C -0.12 -4.40 5.27 30.88 0.16 -4.24 16 21 N -0.61 -31.83 2.43 -664.46 -1.61 -33.44 16 22 C -0.23 -13.52 10.28 84.03 0.86 -12.65 16 23 H 0.07 4.18 7.84 -2.91 -0.02 4.16 16 24 C -0.06 -3.94 5.48 84.86 0.47 -3.47 16 25 N -0.95 -60.15 10.40 21.65 0.23 -59.92 16 26 Si 0.96 50.30 29.56 68.60 2.03 52.32 16 27 H -0.30 -16.18 7.11 99.48 0.71 -15.47 16 28 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 29 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 30 C 0.19 9.14 4.10 86.85 0.36 9.49 16 31 N -0.53 -8.99 6.07 -176.12 -1.07 -10.06 16 32 H 0.44 3.59 8.32 -92.71 -0.77 2.82 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 37 H 0.03 0.49 7.38 -2.39 -0.02 0.48 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.17 5.37 8.06 -2.91 -0.02 5.34 16 43 H 0.41 6.95 7.84 -92.70 -0.73 6.22 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.11 1.83 7.97 -2.39 -0.02 1.81 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.11 2.22 7.75 -2.39 -0.02 2.20 16 48 H 0.09 2.35 8.00 -2.39 -0.02 2.33 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.01 0.39 6.02 -2.38 -0.01 0.38 16 52 H 0.00 -0.12 7.56 -2.39 -0.02 -0.13 16 Total: -1.00 -87.45 404.94 1.29 -86.16 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.57 Total: 14.60 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 6.70 Total: 15.81 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -6.80 Total: -141.03 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.07 Total: -27.86 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.03 Total: 52.32 kcal Total: -87.45 1.29 -86.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047070430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.697 kcal (2) G-P(sol) polarization free energy of solvation -87.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds