Wall clock time and date at job start Wed Apr 1 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47413 * 2 1 4 4 C 1.50698 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.38043 * 126.28681 * 269.99284 * 4 3 2 6 6 C 1.47423 * 126.41888 * 0.02964 * 5 4 3 7 7 O 1.21602 * 119.99910 * 6.71243 * 6 5 4 8 8 N 1.34783 * 120.00358 * 186.71396 * 6 5 4 9 9 C 1.46498 * 120.00121 * 184.57433 * 8 6 5 10 10 H 1.09001 * 109.32217 * 54.12259 * 9 8 6 11 11 C 1.53033 * 109.32478 * 294.48277 * 9 8 6 12 12 C 1.53963 * 108.82259 * 295.14427 * 11 9 8 13 13 H 1.09001 * 112.99834 * 168.08678 * 12 11 9 14 14 C 1.55426 * 106.41836 * 293.82011 * 12 11 9 15 15 C 1.55171 * 100.35633 * 73.38081 * 14 12 11 16 16 H 1.08994 * 113.05440 * 162.99591 * 15 14 12 17 17 C 1.52991 * 109.32562 * 173.59135 * 9 8 6 18 18 N 1.47783 * 104.25265 * 40.55120 * 15 14 12 19 19 C 1.36944 * 125.85474 * 153.53260 * 18 15 14 20 20 H 1.07998 * 119.99544 * 154.84120 * 19 18 15 21 21 C 1.38811 * 120.00043 * 334.84227 * 19 18 15 22 22 N 1.31616 * 120.00120 * 163.09698 * 21 19 18 23 23 Si 1.86801 * 120.00161 * 343.10010 * 21 19 18 24 24 H 1.48503 * 109.46941 * 94.36887 * 23 21 19 25 25 H 1.48495 * 109.47441 * 214.37102 * 23 21 19 26 26 H 1.48504 * 109.46757 * 334.37460 * 23 21 19 27 27 C 1.47080 * 108.28884 * 333.53774 * 18 15 14 28 28 C 1.41298 * 107.16752 * 179.76378 * 5 4 3 29 29 N 1.30444 * 108.02129 * 0.24326 * 28 5 4 30 30 N 1.34254 * 126.29625 * 90.18247 * 4 3 2 31 31 C 1.46504 * 125.75255 * 359.97438 * 30 4 3 32 32 H 1.08999 * 109.47103 * 59.99801 * 1 2 3 33 33 H 1.09000 * 109.47519 * 180.02562 * 1 2 3 34 34 H 1.09011 * 109.47128 * 300.00252 * 1 2 3 35 35 H 1.08998 * 109.47390 * 239.99470 * 2 1 3 36 36 H 1.09004 * 109.47371 * 119.99813 * 2 1 3 37 37 H 1.08994 * 109.46996 * 59.99792 * 3 2 1 38 38 H 1.08998 * 109.46456 * 299.99899 * 3 2 1 39 39 H 0.96996 * 119.99653 * 4.57046 * 8 6 5 40 40 H 1.09003 * 109.57384 * 175.34673 * 11 9 8 41 41 H 1.08994 * 109.68969 * 55.01034 * 11 9 8 42 42 H 1.09001 * 111.23861 * 315.60302 * 14 12 11 43 43 H 1.09004 * 111.24074 * 191.15684 * 14 12 11 44 44 H 1.08997 * 109.53307 * 305.29344 * 17 9 8 45 45 H 1.08994 * 109.53125 * 185.05992 * 17 9 8 46 46 H 0.97000 * 120.00311 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.97597 * 120.46919 * 27 18 15 48 48 H 1.09005 * 109.97450 * 241.74532 * 27 18 15 49 49 H 1.08003 * 125.98779 * 180.20579 * 28 5 4 50 50 H 1.09003 * 109.47222 * 270.26949 * 31 30 4 51 51 H 1.08998 * 109.47315 * 30.26948 * 31 30 4 52 52 H 1.08998 * 109.47195 * 150.27027 * 31 30 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3644 1.4423 1.1117 6 6 3.9268 1.4417 2.5195 7 8 2.7476 1.3181 2.7895 8 7 4.8336 1.5781 3.5073 9 6 4.4129 1.4772 4.9069 10 1 3.8827 0.5368 5.0573 11 6 3.4799 2.6435 5.2406 12 6 4.2720 3.9595 5.1340 13 1 3.6343 4.8432 5.1540 14 6 5.3360 3.9248 6.2664 15 6 6.3281 2.8828 5.6852 16 1 7.3047 2.9074 6.1685 17 6 5.6473 1.5084 5.8101 18 7 6.4016 3.2133 4.2467 19 6 7.4607 2.9561 3.4176 20 1 7.3009 2.8486 2.3549 21 6 8.7397 2.8334 3.9431 22 7 9.6921 2.2688 3.2315 23 14 9.1090 3.4695 5.6602 24 1 8.9693 2.3616 6.6391 25 1 10.4961 3.9975 5.7048 26 1 8.1548 4.5549 6.0017 27 6 5.1421 3.8661 3.8582 28 6 5.6993 1.4366 0.6484 29 7 5.6737 1.4388 -0.6558 30 7 4.3413 1.4459 -1.0830 31 6 3.8891 1.4501 -2.4765 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.6767 1.9562 -0.8900 39 1 5.7647 1.7430 3.2914 40 1 3.0990 2.5277 6.2553 41 1 2.6472 2.6604 4.5375 42 1 4.9031 3.5772 7.2045 43 1 5.8126 4.8972 6.3905 44 1 6.3433 0.7277 5.5031 45 1 5.3462 1.3435 6.8446 46 1 10.5859 2.1833 3.5986 47 1 5.3443 4.8649 3.4713 48 1 4.6315 3.2698 3.1020 49 1 6.5854 1.4320 1.2658 50 1 3.7727 0.4234 -2.8238 51 1 2.9326 1.9680 -2.5467 52 1 4.6257 1.9618 -3.0960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047102674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:20 Heat of formation + Delta-G solvation = 113.803450 kcal Electronic energy + Delta-G solvation = -33541.930214 eV Core-core repulsion = 29545.736984 eV Total energy + Delta-G solvation = -3996.193230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.35296 -40.61491 -37.75168 -35.20818 -33.70660 -33.32241 -32.83747 -31.26524 -30.73402 -30.37771 -28.42645 -26.74092 -26.37003 -25.45103 -22.94483 -22.68168 -21.73588 -21.41314 -20.28137 -19.99466 -19.06096 -18.96632 -17.25198 -16.71396 -16.18066 -15.59927 -15.45552 -15.16102 -14.83238 -14.55914 -14.26419 -14.11746 -13.60667 -13.35773 -13.27972 -13.07755 -12.92232 -12.65859 -12.55944 -12.50564 -12.34307 -12.21413 -12.13924 -12.03728 -11.78053 -11.42686 -11.29861 -11.26213 -11.19674 -10.95518 -10.79277 -10.75963 -10.40370 -10.18309 -10.05905 -9.75306 -9.64907 -9.22299 -9.10474 -9.04075 -8.65999 -8.30165 -7.63783 -7.01285 -6.08327 -3.46235 1.83358 2.58962 2.65983 3.23703 3.41256 3.43208 4.02444 4.08540 4.41553 4.58967 4.66544 4.87713 4.89890 4.99786 5.10111 5.10359 5.21393 5.27178 5.31767 5.32712 5.38582 5.40523 5.46284 5.66129 5.69995 5.70836 5.76894 5.78855 5.80541 5.89163 5.91837 6.01480 6.07034 6.11368 6.19403 6.21714 6.29585 6.36076 6.41954 6.44412 6.50258 6.66748 6.70499 6.84063 6.88089 6.90136 6.98259 7.09405 7.38039 7.67348 7.91666 8.18663 8.58534 8.71458 9.10843 9.54716 10.09237 11.06539 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.004475 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.848583 B = 6255.598121 C = 7739.263288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.057 4.057 4 C 0.146 3.854 5 C -0.286 4.286 6 C 0.582 3.418 7 O -0.572 6.572 8 N -0.697 5.697 9 C 0.167 3.833 10 H 0.062 0.938 11 C -0.127 4.127 12 C -0.101 4.101 13 H 0.080 0.920 14 C -0.130 4.130 15 C 0.141 3.859 16 H 0.065 0.935 17 C -0.142 4.142 18 N -0.602 5.602 19 C -0.269 4.269 20 H 0.098 0.902 21 C 0.034 3.966 22 N -0.900 5.900 23 Si 0.890 3.110 24 H -0.286 1.286 25 H -0.305 1.305 26 H -0.270 1.270 27 C 0.108 3.892 28 C 0.094 3.906 29 N -0.301 5.301 30 N -0.370 5.370 31 C 0.100 3.900 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.433 0.567 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.266 0.734 47 H 0.016 0.984 48 H 0.071 0.929 49 H 0.202 0.798 50 H 0.074 0.926 51 H 0.085 0.915 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.360 -2.111 -4.111 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.096 4.096 4 C 0.014 3.986 5 C -0.301 4.301 6 C 0.370 3.630 7 O -0.454 6.454 8 N -0.361 5.361 9 C 0.062 3.938 10 H 0.080 0.920 11 C -0.165 4.165 12 C -0.120 4.120 13 H 0.099 0.901 14 C -0.168 4.168 15 C 0.035 3.965 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.329 5.329 19 C -0.395 4.395 20 H 0.115 0.885 21 C -0.167 4.167 22 N -0.542 5.542 23 Si 0.722 3.278 24 H -0.214 1.214 25 H -0.234 1.234 26 H -0.195 1.195 27 C -0.017 4.017 28 C -0.093 4.093 29 N -0.119 5.119 30 N -0.150 5.150 31 C -0.042 4.042 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.086 0.914 39 H 0.286 0.714 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.034 0.966 48 H 0.088 0.912 49 H 0.218 0.782 50 H 0.092 0.908 51 H 0.103 0.897 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.142 -2.269 -5.273 16.194 hybrid contribution 0.633 0.553 1.587 1.795 sum -14.509 -1.716 -3.686 15.068 Atomic orbital electron populations 1.21728 0.95352 1.01582 1.01844 1.21367 0.95854 0.95297 1.02375 1.20430 0.86207 0.98816 1.04183 1.21395 0.94220 0.96513 0.86517 1.20131 0.92768 1.23350 0.93861 1.17218 0.85566 0.76225 0.84034 1.90616 1.17244 1.53123 1.84460 1.47315 1.14911 1.69308 1.04559 1.20564 0.94498 0.97278 0.81488 0.91953 1.22125 0.98600 0.94455 1.01307 1.22508 0.96126 0.97154 0.96197 0.90131 1.23018 0.97007 0.99546 0.97236 1.21882 0.95752 0.92128 0.86768 0.91800 1.22473 0.96986 1.00512 0.98210 1.45162 1.15271 1.67212 1.05280 1.18646 0.84155 1.45126 0.91554 0.88470 1.25148 0.95257 0.98457 0.97800 1.69754 1.02837 1.43594 1.37971 0.86764 0.76007 0.79803 0.85186 1.21438 1.23399 1.19522 1.22352 0.87344 0.95662 0.96327 1.24554 0.98080 0.94981 0.91722 1.77263 0.95054 1.25888 1.13744 1.48345 1.04490 1.56230 1.05900 1.21840 1.00947 1.03292 0.78112 0.93102 0.92775 0.92123 0.92862 0.90730 0.87345 0.91426 0.71407 0.92150 0.90111 0.91444 0.91871 0.91176 0.91597 0.92426 0.96565 0.91165 0.78179 0.90772 0.89656 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.15 0.37 -0.99 16 2 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 3 C -0.06 -0.70 4.84 -27.88 -0.13 -0.84 16 4 C 0.15 2.24 6.26 -81.61 -0.51 1.73 16 5 C -0.29 -5.19 6.11 -105.07 -0.64 -5.83 16 6 C 0.58 10.93 5.83 -12.52 -0.07 10.86 16 7 O -0.57 -10.95 13.24 5.28 0.07 -10.88 16 8 N -0.70 -13.24 2.78 -54.87 -0.15 -13.40 16 9 C 0.17 2.90 2.79 -67.92 -0.19 2.72 16 10 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.13 -2.03 5.11 -26.21 -0.13 -2.16 16 12 C -0.10 -1.70 4.33 -87.93 -0.38 -2.08 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.13 -2.24 6.18 -24.29 -0.15 -2.39 16 15 C 0.14 2.83 2.81 -65.62 -0.18 2.65 16 16 H 0.06 1.42 2.45 -51.93 -0.13 1.29 16 17 C -0.14 -2.52 5.40 -26.27 -0.14 -2.66 16 18 N -0.60 -13.23 1.50 -161.37 -0.24 -13.47 16 19 C -0.27 -6.78 8.79 -15.06 -0.13 -6.92 16 20 H 0.10 2.57 6.15 -52.49 -0.32 2.24 16 21 C 0.03 0.92 5.47 -17.43 -0.10 0.83 16 22 N -0.90 -25.65 13.97 55.49 0.78 -24.88 16 23 Si 0.89 21.49 24.55 -169.99 -4.17 17.32 16 24 H -0.29 -6.73 6.94 56.52 0.39 -6.34 16 25 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.27 -6.38 6.65 56.52 0.38 -6.01 16 27 C 0.11 2.15 5.77 -2.83 -0.02 2.14 16 28 C 0.09 1.80 11.42 -16.98 -0.19 1.60 16 29 N -0.30 -5.51 12.50 30.86 0.39 -5.12 16 30 N -0.37 -5.49 3.98 -63.34 -0.25 -5.74 16 31 C 0.10 0.94 11.24 59.85 0.67 1.61 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.11 1.52 6.66 -51.93 -0.35 1.17 16 38 H 0.07 0.65 7.05 -51.93 -0.37 0.28 16 39 H 0.43 9.00 3.21 -40.82 -0.13 8.87 16 40 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16 41 H 0.08 1.38 6.33 -51.93 -0.33 1.05 16 42 H 0.07 0.99 7.75 -51.93 -0.40 0.59 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 1.43 3.76 -58.48 -0.22 1.21 16 49 H 0.20 4.12 5.83 -52.48 -0.31 3.81 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.08 0.59 7.02 -51.93 -0.36 0.23 16 52 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -30.07 379.59 -7.95 -38.03 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -7.99 Total: 13.56 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.10 Total: -1.13 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.51 Total: -62.60 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.17 Total: 17.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.07 -7.95 -38.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047102674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.829 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds