Wall clock time and date at job start Wed Apr 1 2020 05:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47413 * 2 1 4 4 C 1.50698 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.38043 * 126.28681 * 269.99284 * 4 3 2 6 6 C 1.47423 * 126.41888 * 0.02964 * 5 4 3 7 7 O 1.21602 * 119.99910 * 6.71243 * 6 5 4 8 8 N 1.34783 * 120.00358 * 186.71396 * 6 5 4 9 9 C 1.46498 * 120.00121 * 184.57433 * 8 6 5 10 10 H 1.09001 * 109.32217 * 54.12259 * 9 8 6 11 11 C 1.53033 * 109.32478 * 294.48277 * 9 8 6 12 12 C 1.53963 * 108.82259 * 295.14427 * 11 9 8 13 13 H 1.09001 * 112.99834 * 168.08678 * 12 11 9 14 14 C 1.55426 * 106.41836 * 293.82011 * 12 11 9 15 15 C 1.55171 * 100.35633 * 73.38081 * 14 12 11 16 16 H 1.08994 * 113.05440 * 162.99591 * 15 14 12 17 17 C 1.52991 * 109.32562 * 173.59135 * 9 8 6 18 18 N 1.47783 * 104.25265 * 40.55120 * 15 14 12 19 19 C 1.36944 * 125.85474 * 153.53260 * 18 15 14 20 20 H 1.07998 * 119.99544 * 154.84120 * 19 18 15 21 21 C 1.38811 * 120.00043 * 334.84227 * 19 18 15 22 22 N 1.31616 * 120.00120 * 163.09698 * 21 19 18 23 23 Si 1.86801 * 120.00161 * 343.10010 * 21 19 18 24 24 H 1.48503 * 109.46941 * 94.36887 * 23 21 19 25 25 H 1.48495 * 109.47441 * 214.37102 * 23 21 19 26 26 H 1.48504 * 109.46757 * 334.37460 * 23 21 19 27 27 C 1.47080 * 108.28884 * 333.53774 * 18 15 14 28 28 C 1.41298 * 107.16752 * 179.76378 * 5 4 3 29 29 N 1.30444 * 108.02129 * 0.24326 * 28 5 4 30 30 N 1.34254 * 126.29625 * 90.18247 * 4 3 2 31 31 C 1.46504 * 125.75255 * 359.97438 * 30 4 3 32 32 H 1.08999 * 109.47103 * 59.99801 * 1 2 3 33 33 H 1.09000 * 109.47519 * 180.02562 * 1 2 3 34 34 H 1.09011 * 109.47128 * 300.00252 * 1 2 3 35 35 H 1.08998 * 109.47390 * 239.99470 * 2 1 3 36 36 H 1.09004 * 109.47371 * 119.99813 * 2 1 3 37 37 H 1.08994 * 109.46996 * 59.99792 * 3 2 1 38 38 H 1.08998 * 109.46456 * 299.99899 * 3 2 1 39 39 H 0.96996 * 119.99653 * 4.57046 * 8 6 5 40 40 H 1.09003 * 109.57384 * 175.34673 * 11 9 8 41 41 H 1.08994 * 109.68969 * 55.01034 * 11 9 8 42 42 H 1.09001 * 111.23861 * 315.60302 * 14 12 11 43 43 H 1.09004 * 111.24074 * 191.15684 * 14 12 11 44 44 H 1.08997 * 109.53307 * 305.29344 * 17 9 8 45 45 H 1.08994 * 109.53125 * 185.05992 * 17 9 8 46 46 H 0.97000 * 120.00311 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.97597 * 120.46919 * 27 18 15 48 48 H 1.09005 * 109.97450 * 241.74532 * 27 18 15 49 49 H 1.08003 * 125.98779 * 180.20579 * 28 5 4 50 50 H 1.09003 * 109.47222 * 270.26949 * 31 30 4 51 51 H 1.08998 * 109.47315 * 30.26948 * 31 30 4 52 52 H 1.08998 * 109.47195 * 150.27027 * 31 30 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3644 1.4423 1.1117 6 6 3.9268 1.4417 2.5195 7 8 2.7476 1.3181 2.7895 8 7 4.8336 1.5781 3.5073 9 6 4.4129 1.4772 4.9069 10 1 3.8827 0.5368 5.0573 11 6 3.4799 2.6435 5.2406 12 6 4.2720 3.9595 5.1340 13 1 3.6343 4.8432 5.1540 14 6 5.3360 3.9248 6.2664 15 6 6.3281 2.8828 5.6852 16 1 7.3047 2.9074 6.1685 17 6 5.6473 1.5084 5.8101 18 7 6.4016 3.2133 4.2467 19 6 7.4607 2.9561 3.4176 20 1 7.3009 2.8486 2.3549 21 6 8.7397 2.8334 3.9431 22 7 9.6921 2.2688 3.2315 23 14 9.1090 3.4695 5.6602 24 1 8.9693 2.3616 6.6391 25 1 10.4961 3.9975 5.7048 26 1 8.1548 4.5549 6.0017 27 6 5.1421 3.8661 3.8582 28 6 5.6993 1.4366 0.6484 29 7 5.6737 1.4388 -0.6558 30 7 4.3413 1.4459 -1.0830 31 6 3.8891 1.4501 -2.4765 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.6767 1.9562 -0.8900 39 1 5.7647 1.7430 3.2914 40 1 3.0990 2.5277 6.2553 41 1 2.6472 2.6604 4.5375 42 1 4.9031 3.5772 7.2045 43 1 5.8126 4.8972 6.3905 44 1 6.3433 0.7277 5.5031 45 1 5.3462 1.3435 6.8446 46 1 10.5859 2.1833 3.5986 47 1 5.3443 4.8649 3.4713 48 1 4.6315 3.2698 3.1020 49 1 6.5854 1.4320 1.2658 50 1 3.7727 0.4234 -2.8238 51 1 2.9326 1.9680 -2.5467 52 1 4.6257 1.9618 -3.0960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047102674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:19 Heat of formation + Delta-G solvation = 96.280162 kcal Electronic energy + Delta-G solvation = -33542.690081 eV Core-core repulsion = 29545.736984 eV Total energy + Delta-G solvation = -3996.953097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.72540 -42.01779 -39.22109 -36.21711 -35.44445 -34.69166 -34.12390 -33.01331 -32.24726 -31.55897 -29.83411 -27.92971 -27.35744 -27.12695 -24.61297 -24.02667 -22.88094 -22.63365 -21.84861 -21.41919 -20.44576 -20.32634 -18.71006 -18.37019 -17.81596 -16.90676 -16.65454 -16.55202 -16.10383 -15.82256 -15.73515 -15.47577 -15.04012 -14.79061 -14.64705 -14.35930 -14.31039 -14.00974 -13.86925 -13.75280 -13.58414 -13.51436 -13.40683 -13.32215 -13.03337 -12.89505 -12.82557 -12.61459 -12.40351 -12.33408 -12.12776 -11.93535 -11.79277 -11.57878 -11.50164 -11.43196 -11.15483 -10.89337 -10.69865 -10.40774 -10.33323 -9.64986 -9.11719 -8.83404 -8.15668 -5.48197 0.58184 1.17940 1.28458 1.41618 1.48876 1.49680 2.41200 2.59326 2.69273 3.10989 3.30236 3.51511 3.61451 3.71807 3.91799 3.92367 3.94734 4.14246 4.19215 4.22455 4.27875 4.34180 4.36525 4.39946 4.44123 4.48221 4.59905 4.64169 4.68141 4.74503 4.78486 4.84660 4.86611 4.97041 4.97826 5.02005 5.06362 5.08988 5.20826 5.24091 5.25831 5.38757 5.41657 5.43235 5.45414 5.47482 5.52729 5.76413 5.95351 5.99654 6.15030 6.55794 6.80341 7.05474 7.55282 7.60145 8.16057 9.02879 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.004475 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.848583 B = 6255.598121 C = 7739.263288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.052 4.052 4 C 0.159 3.841 5 C -0.318 4.318 6 C 0.581 3.419 7 O -0.577 6.577 8 N -0.707 5.707 9 C 0.161 3.839 10 H 0.068 0.932 11 C -0.116 4.116 12 C -0.090 4.090 13 H 0.106 0.894 14 C -0.120 4.120 15 C 0.123 3.877 16 H 0.046 0.954 17 C -0.135 4.135 18 N -0.610 5.610 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.022 4.022 22 N -0.947 5.947 23 Si 0.946 3.054 24 H -0.277 1.277 25 H -0.321 1.321 26 H -0.260 1.260 27 C 0.104 3.896 28 C 0.078 3.922 29 N -0.326 5.326 30 N -0.359 5.359 31 C 0.084 3.916 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.423 0.577 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.104 0.896 46 H 0.261 0.739 47 H -0.001 1.001 48 H 0.066 0.934 49 H 0.172 0.828 50 H 0.096 0.904 51 H 0.120 0.880 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.156 -1.671 -3.544 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.091 4.091 4 C 0.025 3.975 5 C -0.332 4.332 6 C 0.370 3.630 7 O -0.461 6.461 8 N -0.369 5.369 9 C 0.056 3.944 10 H 0.086 0.914 11 C -0.154 4.154 12 C -0.109 4.109 13 H 0.124 0.876 14 C -0.158 4.158 15 C 0.018 3.982 16 H 0.064 0.936 17 C -0.175 4.175 18 N -0.338 5.338 19 C -0.370 4.370 20 H 0.090 0.910 21 C -0.218 4.218 22 N -0.592 5.592 23 Si 0.779 3.221 24 H -0.204 1.204 25 H -0.251 1.251 26 H -0.185 1.185 27 C -0.021 4.021 28 C -0.108 4.108 29 N -0.146 5.146 30 N -0.138 5.138 31 C -0.055 4.055 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.273 0.727 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.122 0.878 46 H 0.070 0.930 47 H 0.017 0.983 48 H 0.083 0.917 49 H 0.189 0.811 50 H 0.114 0.886 51 H 0.139 0.861 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.991 -1.825 -4.689 19.646 hybrid contribution 1.713 0.373 1.220 2.136 sum -17.278 -1.452 -3.469 17.682 Atomic orbital electron populations 1.21691 0.93402 1.02360 1.02516 1.21318 0.97430 0.94170 1.01480 1.20542 0.83548 0.99795 1.05220 1.21862 0.95621 0.94305 0.85743 1.20268 0.92730 1.25600 0.94629 1.17297 0.85459 0.75948 0.84310 1.90593 1.17164 1.53651 1.84655 1.47404 1.14399 1.69491 1.05604 1.20761 0.94679 0.98458 0.80508 0.91434 1.22056 0.97469 0.92895 1.02971 1.22525 0.95815 0.98751 0.93778 0.87636 1.23021 0.95952 0.98207 0.98656 1.22116 0.96081 0.94700 0.85260 0.93622 1.22413 0.96451 0.98162 1.00444 1.45190 1.14847 1.67622 1.06106 1.18578 0.85060 1.42182 0.91178 0.91012 1.25677 0.95357 0.99711 1.01050 1.69886 1.03113 1.46372 1.39868 0.85847 0.74785 0.79608 0.81896 1.20433 1.25130 1.18513 1.22436 0.87022 0.94206 0.98407 1.24143 0.97927 0.96586 0.92180 1.77147 0.97644 1.26601 1.13223 1.48734 1.03063 1.54249 1.07777 1.22393 1.02634 1.05403 0.75098 0.90827 0.92009 0.93027 0.91526 0.93917 0.88954 0.87632 0.72669 0.88731 0.91089 0.87596 0.92497 0.93527 0.87786 0.92959 0.98313 0.91683 0.81072 0.88606 0.86149 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 3 C -0.05 -1.16 4.84 29.85 0.14 -1.02 16 4 C 0.16 4.79 6.26 42.14 0.26 5.05 16 5 C -0.32 -11.92 6.11 -20.15 -0.12 -12.04 16 6 C 0.58 22.31 5.83 86.66 0.51 22.81 16 7 O -0.58 -21.98 13.24 -4.04 -0.05 -22.03 16 8 N -0.71 -27.45 2.78 -445.76 -1.24 -28.69 16 9 C 0.16 5.35 2.79 45.00 0.13 5.48 16 10 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 11 C -0.12 -3.33 5.11 30.93 0.16 -3.17 16 12 C -0.09 -2.76 4.33 -9.05 -0.04 -2.80 16 13 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 14 C -0.12 -3.71 6.18 32.17 0.20 -3.52 16 15 C 0.12 4.79 2.81 45.79 0.13 4.92 16 16 H 0.05 1.97 2.45 -2.39 -0.01 1.96 16 17 C -0.14 -4.57 5.40 30.89 0.17 -4.40 16 18 N -0.61 -27.18 1.50 -664.47 -1.00 -28.18 16 19 C -0.24 -12.86 8.79 84.03 0.74 -12.12 16 20 H 0.07 4.12 6.15 -2.91 -0.02 4.11 16 21 C -0.02 -1.21 5.47 84.86 0.46 -0.74 16 22 N -0.95 -57.19 13.97 21.65 0.30 -56.89 16 23 Si 0.95 45.67 24.55 68.60 1.68 47.35 16 24 H -0.28 -12.72 6.94 99.48 0.69 -12.03 16 25 H -0.32 -16.16 7.11 99.48 0.71 -15.46 16 26 H -0.26 -11.93 6.65 99.48 0.66 -11.27 16 27 C 0.10 4.13 5.77 86.85 0.50 4.63 16 28 C 0.08 3.22 11.42 85.65 0.98 4.20 16 29 N -0.33 -12.41 12.50 -56.27 -0.70 -13.11 16 30 N -0.36 -10.33 3.98 -354.31 -1.41 -11.74 16 31 C 0.08 1.34 11.24 127.77 1.44 2.78 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.09 2.44 6.66 -2.39 -0.02 2.42 16 38 H 0.11 1.56 7.05 -2.39 -0.02 1.54 16 39 H 0.42 18.49 3.21 -92.71 -0.30 18.20 16 40 H 0.09 2.13 7.97 -2.39 -0.02 2.11 16 41 H 0.07 2.24 6.33 -2.39 -0.02 2.22 16 42 H 0.11 2.50 7.75 -2.39 -0.02 2.48 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.10 2.72 8.00 -2.39 -0.02 2.70 16 46 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.07 2.70 3.76 -15.32 -0.06 2.65 16 49 H 0.17 7.94 5.83 -2.91 -0.02 7.92 16 50 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.12 1.12 7.02 -2.39 -0.02 1.10 16 52 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -70.36 379.59 4.66 -65.70 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: 0.54 Total: 40.98 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 6.54 Total: 6.60 kcal Atomic # 7 Polarization: -134.55 SS G_CDS: -4.05 Total: -138.60 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.68 Total: 47.35 kcal Total: -70.36 4.66 -65.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047102674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.975 kcal (2) G-P(sol) polarization free energy of solvation -70.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds