Wall clock time and date at job start Wed Apr 1 2020 05:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47198 * 2 1 4 4 C 1.50705 * 109.47290 * 119.99690 * 2 1 3 5 5 C 1.39668 * 126.06970 * 275.00274 * 4 2 1 6 6 C 1.38410 * 105.35962 * 180.02562 * 5 4 2 7 7 C 1.47167 * 126.88262 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99646 * 184.98804 * 7 6 5 9 9 N 1.34772 * 120.00351 * 4.98531 * 7 6 5 10 10 C 1.46492 * 120.00333 * 185.07725 * 9 7 6 11 11 H 1.08997 * 109.17789 * 35.44526 * 10 9 7 12 12 C 1.53028 * 109.32804 * 155.00217 * 10 9 7 13 13 C 1.53971 * 108.93717 * 175.74530 * 12 10 9 14 14 H 1.09005 * 112.99331 * 168.02149 * 13 12 10 15 15 C 1.55425 * 106.41377 * 293.75316 * 13 12 10 16 16 C 1.55167 * 100.35427 * 73.37767 * 15 13 12 17 17 H 1.08999 * 112.48573 * 162.66850 * 16 15 13 18 18 C 1.53882 * 107.26236 * 286.72505 * 16 15 13 19 19 N 1.47792 * 104.25674 * 40.55259 * 16 15 13 20 20 C 1.36937 * 125.85984 * 153.56810 * 19 16 15 21 21 H 1.07998 * 119.99593 * 354.78699 * 20 19 16 22 22 C 1.38806 * 119.99937 * 174.78421 * 20 19 16 23 23 N 1.31621 * 119.99994 * 5.32879 * 22 20 19 24 24 Si 1.86801 * 120.00070 * 185.32050 * 22 20 19 25 25 H 1.48508 * 109.46836 * 95.00036 * 24 22 20 26 26 H 1.48498 * 109.47258 * 214.99721 * 24 22 20 27 27 H 1.48496 * 109.46921 * 335.00258 * 24 22 20 28 28 C 1.47085 * 108.28435 * 333.53478 * 19 16 15 29 29 N 1.36596 * 106.23223 * 0.26364 * 6 5 4 30 30 C 1.46498 * 125.19113 * 179.73634 * 29 6 5 31 31 N 1.28447 * 109.61586 * 359.54849 * 29 6 5 32 32 H 1.09000 * 109.47098 * 300.00083 * 1 2 3 33 33 H 1.08997 * 109.46843 * 60.00086 * 1 2 3 34 34 H 1.09001 * 109.46956 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.47519 * 239.99668 * 2 1 3 36 36 H 1.09000 * 109.47088 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46703 * 299.99517 * 3 2 1 38 38 H 1.09000 * 109.47164 * 59.99957 * 3 2 1 39 39 H 1.08003 * 127.32135 * 0.02562 * 5 4 2 40 40 H 0.97005 * 119.99529 * 5.07510 * 9 7 6 41 41 H 1.09004 * 109.57920 * 55.87216 * 12 10 9 42 42 H 1.09009 * 109.58023 * 295.61266 * 12 10 9 43 43 H 1.08998 * 111.23493 * 191.15347 * 15 13 12 44 44 H 1.09001 * 111.23604 * 315.60167 * 15 13 12 45 45 H 1.09005 * 109.53442 * 185.71012 * 18 16 15 46 46 H 1.08994 * 109.53306 * 305.86424 * 18 16 15 47 47 H 0.97008 * 119.99866 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.97561 * 241.75172 * 28 19 16 49 49 H 1.08995 * 110.01219 * 120.48414 * 28 19 16 50 50 H 1.09001 * 109.46897 * 84.33620 * 30 29 6 51 51 H 1.08999 * 109.46959 * 204.33065 * 30 29 6 52 52 H 1.08993 * 109.46943 * 324.33574 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.2137 -0.1404 2.4926 6 6 2.6861 -1.1657 3.2935 7 6 3.0362 -1.0821 4.7205 8 8 3.5273 -2.0419 5.2833 9 7 2.8126 0.0580 5.4036 10 6 3.2619 0.1797 6.7926 11 1 4.2047 -0.3540 6.9121 12 6 3.4703 1.6577 7.1298 13 6 3.8382 1.7833 8.6197 14 1 4.2026 2.7755 8.8861 15 6 2.5835 1.3369 9.4210 16 6 2.6336 -0.1961 9.1864 17 1 2.0211 -0.7473 9.8999 18 6 2.2071 -0.4494 7.7297 19 7 4.0683 -0.5342 9.2947 20 6 4.5805 -1.7490 9.6650 21 1 3.9183 -2.5377 9.9902 22 6 5.9507 -1.9666 9.6224 23 7 6.7655 -0.9758 9.3275 24 14 6.6383 -3.6654 9.9837 25 1 6.8399 -4.3993 8.7085 26 1 7.9382 -3.5335 10.6896 27 1 5.6836 -4.4139 10.8401 28 6 4.8516 0.6578 8.9357 29 7 2.7685 -2.2689 2.4924 30 6 3.2291 -3.5917 2.9218 31 7 2.3767 -1.9706 1.3060 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6767 1.9564 0.8900 39 1 2.0253 0.8829 2.7822 40 1 2.3543 0.7979 4.9754 41 1 2.5517 2.2105 6.9325 42 1 4.2778 2.0615 6.5189 43 1 2.6846 1.5778 10.4792 44 1 1.6742 1.7704 9.0046 45 1 2.1312 -1.5224 7.5534 46 1 1.2403 0.0193 7.5464 47 1 7.7231 -1.1280 9.2973 48 1 5.4637 0.4507 8.0579 49 1 5.4867 0.9524 9.7711 50 1 2.3994 -4.1369 3.3717 51 1 3.6018 -4.1442 2.0593 52 1 4.0287 -3.4779 3.6537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047176255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:24 Heat of formation + Delta-G solvation = 63.275760 kcal Electronic energy + Delta-G solvation = -31850.499324 eV Core-core repulsion = 27852.115049 eV Total energy + Delta-G solvation = -3998.384275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.59365 -39.95990 -38.47647 -36.12877 -34.62630 -32.93597 -32.33549 -31.20924 -30.67528 -29.34551 -28.18551 -27.37302 -26.79594 -25.30400 -23.71308 -23.11698 -22.75039 -21.28057 -20.23644 -19.60000 -19.33063 -18.55866 -17.56947 -16.94549 -16.29843 -16.12922 -15.72938 -15.03447 -14.59855 -14.40513 -14.34706 -14.19764 -14.07534 -13.60612 -13.54632 -13.39235 -12.97676 -12.73440 -12.63268 -12.53869 -12.28595 -12.01603 -11.84439 -11.76061 -11.60081 -11.57589 -11.39075 -11.31281 -11.25246 -10.73392 -10.67879 -10.61210 -10.54931 -9.97948 -9.96483 -9.75984 -9.69957 -9.52983 -9.33599 -9.13782 -8.92522 -8.60585 -8.52198 -6.77068 -5.64977 -2.96445 1.33579 2.38865 2.49499 3.38810 3.41562 3.46578 3.52185 3.52884 4.25434 4.56170 4.58168 4.78697 4.88536 4.97431 5.17700 5.19641 5.22488 5.23782 5.24041 5.41034 5.41542 5.43007 5.50068 5.55993 5.59769 5.62896 5.64057 5.76026 5.82043 5.85068 5.87894 6.03099 6.03980 6.06661 6.08834 6.11435 6.13001 6.22919 6.42522 6.55876 6.61533 6.65994 6.70552 6.82799 6.87231 6.98638 7.03475 7.59948 7.64418 7.70811 7.87871 8.05434 8.31091 8.41439 9.28691 9.89221 10.55423 11.47242 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.003151 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.712802 B = 8883.092463 C =10244.011061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.008 4.008 3 C -0.143 4.143 4 C 0.029 3.971 5 C -0.189 4.189 6 C -0.026 4.026 7 C 0.581 3.419 8 O -0.522 6.522 9 N -0.710 5.710 10 C 0.149 3.851 11 H 0.115 0.885 12 C -0.111 4.111 13 C -0.118 4.118 14 H 0.083 0.917 15 C -0.127 4.127 16 C 0.156 3.844 17 H 0.064 0.936 18 C -0.133 4.133 19 N -0.595 5.595 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.006 4.006 23 N -0.922 5.922 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.282 1.282 28 C 0.179 3.821 29 N -0.257 5.257 30 C 0.086 3.914 31 N -0.282 5.282 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.157 0.843 40 H 0.393 0.607 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.250 0.750 48 H 0.049 0.951 49 H 0.041 0.959 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 6.792 -15.744 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.128 4.128 5 C -0.218 4.218 6 C -0.155 4.155 7 C 0.365 3.635 8 O -0.397 6.397 9 N -0.360 5.360 10 C 0.046 3.954 11 H 0.133 0.867 12 C -0.149 4.149 13 C -0.138 4.138 14 H 0.101 0.899 15 C -0.166 4.166 16 C 0.048 3.952 17 H 0.082 0.918 18 C -0.174 4.174 19 N -0.320 5.320 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.570 5.570 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.220 1.220 27 H -0.208 1.208 28 C 0.054 3.946 29 N -0.044 5.044 30 C -0.054 4.054 31 N -0.115 5.115 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.174 0.826 40 H 0.227 0.773 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.102 0.898 51 H 0.111 0.889 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.228 4.817 -15.847 20.010 hybrid contribution 0.168 0.036 0.377 0.414 sum -11.060 4.852 -15.470 19.626 Atomic orbital electron populations 1.21811 0.94054 1.02093 1.01970 1.19394 0.95529 0.94933 0.92985 1.21826 1.01435 0.94713 1.02143 1.21873 1.04490 0.90169 0.96248 1.21980 1.07470 0.99435 0.92953 1.21622 1.10396 0.89011 0.94441 1.16930 0.79082 0.83962 0.83533 1.90889 1.43518 1.35794 1.69512 1.45912 1.59741 1.15642 1.14717 1.21545 1.00445 0.96397 0.77014 0.86682 1.21946 1.00477 0.94814 0.97682 1.22833 0.97808 1.00083 0.93064 0.89898 1.22969 0.96780 0.97166 0.99669 1.21515 0.87974 0.92810 0.92918 0.91845 1.22840 0.96141 1.00638 0.97822 1.44611 0.98639 1.09246 1.79470 1.19005 0.90653 0.88369 1.36826 0.90636 1.24735 0.95978 0.97460 1.01997 1.69950 1.02270 1.29287 1.55444 0.86163 0.78288 0.84101 0.77619 1.21687 1.21964 1.20761 1.21325 0.90459 0.83207 0.99564 1.45535 1.44049 1.09849 1.04943 1.22358 1.02293 0.78669 1.02093 1.73094 1.17294 1.17811 1.03276 0.92341 0.92120 0.92607 0.89993 0.92353 0.92041 0.92134 0.82563 0.77323 0.92665 0.92009 0.91828 0.92184 0.91964 0.93884 0.93943 0.93288 0.94097 0.89775 0.88936 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -1.04 8.79 37.16 0.33 -0.71 16 4 C 0.03 0.35 6.13 -82.47 -0.51 -0.16 16 5 C -0.19 -2.29 9.65 -38.98 -0.38 -2.67 16 6 C -0.03 -0.38 6.96 -82.06 -0.57 -0.95 16 7 C 0.58 9.94 7.74 -12.64 -0.10 9.84 16 8 O -0.52 -11.06 14.49 5.26 0.08 -10.98 16 9 N -0.71 -10.67 5.06 -54.20 -0.27 -10.94 16 10 C 0.15 2.66 2.04 -67.14 -0.14 2.52 16 11 H 0.12 2.72 5.48 -51.93 -0.28 2.43 16 12 C -0.11 -1.70 4.96 -26.21 -0.13 -1.83 16 13 C -0.12 -2.05 4.33 -87.92 -0.38 -2.43 16 14 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 15 C -0.13 -2.12 6.19 -24.30 -0.15 -2.27 16 16 C 0.16 3.11 4.24 -65.62 -0.28 2.83 16 17 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 18 C -0.13 -2.45 5.42 -25.49 -0.14 -2.59 16 19 N -0.60 -14.65 2.43 -161.37 -0.39 -15.04 16 20 C -0.22 -6.14 10.28 -15.06 -0.15 -6.29 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 23 N -0.92 -27.15 10.38 55.49 0.58 -26.57 16 24 Si 0.91 22.83 29.56 -169.99 -5.02 17.80 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.18 4.17 4.10 -2.82 -0.01 4.16 16 29 N -0.26 -3.75 3.75 -63.88 -0.24 -3.99 16 30 C 0.09 1.07 10.71 59.85 0.64 1.72 16 31 N -0.28 -3.99 11.90 33.64 0.40 -3.59 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.40 7.37 -51.93 -0.38 0.02 16 39 H 0.16 1.43 7.08 -52.48 -0.37 1.05 16 40 H 0.39 4.50 7.67 -40.82 -0.31 4.18 16 41 H 0.05 0.69 7.97 -51.93 -0.41 0.28 16 42 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.84 7.77 -51.93 -0.40 0.43 16 45 H 0.06 1.31 8.12 -51.93 -0.42 0.89 16 46 H 0.04 0.67 8.03 -51.93 -0.42 0.26 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.05 1.28 6.02 -51.93 -0.31 0.97 16 49 H 0.04 1.07 7.55 -51.93 -0.39 0.68 16 50 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.11 1.59 6.55 -51.93 -0.34 1.25 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -33.25 401.93 -9.52 -42.77 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.67 Total: 4.70 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.03 Total: -0.20 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.07 Total: -60.14 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.25 -9.52 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047176255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.043 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds