Wall clock time and date at job start Wed Apr 1 2020 05:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47198 * 2 1 4 4 C 1.50705 * 109.47290 * 119.99690 * 2 1 3 5 5 C 1.39668 * 126.06970 * 275.00274 * 4 2 1 6 6 C 1.38410 * 105.35962 * 180.02562 * 5 4 2 7 7 C 1.47167 * 126.88262 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99646 * 184.98804 * 7 6 5 9 9 N 1.34772 * 120.00351 * 4.98531 * 7 6 5 10 10 C 1.46492 * 120.00333 * 185.07725 * 9 7 6 11 11 H 1.08997 * 109.17789 * 35.44526 * 10 9 7 12 12 C 1.53028 * 109.32804 * 155.00217 * 10 9 7 13 13 C 1.53971 * 108.93717 * 175.74530 * 12 10 9 14 14 H 1.09005 * 112.99331 * 168.02149 * 13 12 10 15 15 C 1.55425 * 106.41377 * 293.75316 * 13 12 10 16 16 C 1.55167 * 100.35427 * 73.37767 * 15 13 12 17 17 H 1.08999 * 112.48573 * 162.66850 * 16 15 13 18 18 C 1.53882 * 107.26236 * 286.72505 * 16 15 13 19 19 N 1.47792 * 104.25674 * 40.55259 * 16 15 13 20 20 C 1.36937 * 125.85984 * 153.56810 * 19 16 15 21 21 H 1.07998 * 119.99593 * 354.78699 * 20 19 16 22 22 C 1.38806 * 119.99937 * 174.78421 * 20 19 16 23 23 N 1.31621 * 119.99994 * 5.32879 * 22 20 19 24 24 Si 1.86801 * 120.00070 * 185.32050 * 22 20 19 25 25 H 1.48508 * 109.46836 * 95.00036 * 24 22 20 26 26 H 1.48498 * 109.47258 * 214.99721 * 24 22 20 27 27 H 1.48496 * 109.46921 * 335.00258 * 24 22 20 28 28 C 1.47085 * 108.28435 * 333.53478 * 19 16 15 29 29 N 1.36596 * 106.23223 * 0.26364 * 6 5 4 30 30 C 1.46498 * 125.19113 * 179.73634 * 29 6 5 31 31 N 1.28447 * 109.61586 * 359.54849 * 29 6 5 32 32 H 1.09000 * 109.47098 * 300.00083 * 1 2 3 33 33 H 1.08997 * 109.46843 * 60.00086 * 1 2 3 34 34 H 1.09001 * 109.46956 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.47519 * 239.99668 * 2 1 3 36 36 H 1.09000 * 109.47088 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46703 * 299.99517 * 3 2 1 38 38 H 1.09000 * 109.47164 * 59.99957 * 3 2 1 39 39 H 1.08003 * 127.32135 * 0.02562 * 5 4 2 40 40 H 0.97005 * 119.99529 * 5.07510 * 9 7 6 41 41 H 1.09004 * 109.57920 * 55.87216 * 12 10 9 42 42 H 1.09009 * 109.58023 * 295.61266 * 12 10 9 43 43 H 1.08998 * 111.23493 * 191.15347 * 15 13 12 44 44 H 1.09001 * 111.23604 * 315.60167 * 15 13 12 45 45 H 1.09005 * 109.53442 * 185.71012 * 18 16 15 46 46 H 1.08994 * 109.53306 * 305.86424 * 18 16 15 47 47 H 0.97008 * 119.99866 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.97561 * 241.75172 * 28 19 16 49 49 H 1.08995 * 110.01219 * 120.48414 * 28 19 16 50 50 H 1.09001 * 109.46897 * 84.33620 * 30 29 6 51 51 H 1.08999 * 109.46959 * 204.33065 * 30 29 6 52 52 H 1.08993 * 109.46943 * 324.33574 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.2137 -0.1404 2.4926 6 6 2.6861 -1.1657 3.2935 7 6 3.0362 -1.0821 4.7205 8 8 3.5273 -2.0419 5.2833 9 7 2.8126 0.0580 5.4036 10 6 3.2619 0.1797 6.7926 11 1 4.2047 -0.3540 6.9121 12 6 3.4703 1.6577 7.1298 13 6 3.8382 1.7833 8.6197 14 1 4.2026 2.7755 8.8861 15 6 2.5835 1.3369 9.4210 16 6 2.6336 -0.1961 9.1864 17 1 2.0211 -0.7473 9.8999 18 6 2.2071 -0.4494 7.7297 19 7 4.0683 -0.5342 9.2947 20 6 4.5805 -1.7490 9.6650 21 1 3.9183 -2.5377 9.9902 22 6 5.9507 -1.9666 9.6224 23 7 6.7655 -0.9758 9.3275 24 14 6.6383 -3.6654 9.9837 25 1 6.8399 -4.3993 8.7085 26 1 7.9382 -3.5335 10.6896 27 1 5.6836 -4.4139 10.8401 28 6 4.8516 0.6578 8.9357 29 7 2.7685 -2.2689 2.4924 30 6 3.2291 -3.5917 2.9218 31 7 2.3767 -1.9706 1.3060 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6767 1.9564 0.8900 39 1 2.0253 0.8829 2.7822 40 1 2.3543 0.7979 4.9754 41 1 2.5517 2.2105 6.9325 42 1 4.2778 2.0615 6.5189 43 1 2.6846 1.5778 10.4792 44 1 1.6742 1.7704 9.0046 45 1 2.1312 -1.5224 7.5534 46 1 1.2403 0.0193 7.5464 47 1 7.7231 -1.1280 9.2973 48 1 5.4637 0.4507 8.0579 49 1 5.4867 0.9524 9.7711 50 1 2.3994 -4.1369 3.3717 51 1 3.6018 -4.1442 2.0593 52 1 4.0287 -3.4779 3.6537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047176255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:23 Heat of formation + Delta-G solvation = 41.829064 kcal Electronic energy + Delta-G solvation = -31851.429322 eV Core-core repulsion = 27852.115049 eV Total energy + Delta-G solvation = -3999.314274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.63175 -41.43145 -39.93279 -36.91019 -36.12973 -34.77190 -33.33091 -32.52306 -32.23364 -30.98162 -29.65537 -27.98632 -27.70029 -27.18654 -24.98906 -24.80914 -23.69351 -22.50142 -21.47640 -21.18589 -20.63089 -19.83036 -18.94497 -18.66598 -17.45636 -17.36885 -17.02807 -16.58295 -16.23519 -15.81788 -15.54551 -15.29954 -15.17469 -14.99541 -14.67142 -14.50812 -14.21593 -14.13214 -13.77671 -13.52553 -13.44685 -13.42142 -13.32883 -13.23437 -13.03608 -12.83688 -12.63369 -12.52989 -12.29518 -12.14583 -12.12673 -11.98431 -11.88200 -11.62362 -11.48225 -11.42366 -11.16473 -11.07392 -10.86588 -10.66854 -10.31198 -9.94744 -9.89077 -8.80634 -7.83336 -5.13581 0.19704 1.34052 1.38077 1.42426 1.48471 1.53267 2.13812 2.18251 2.48693 3.35441 3.38567 3.49952 3.68280 3.83501 3.88811 3.96944 4.11225 4.12808 4.18458 4.27348 4.34956 4.39850 4.41619 4.46608 4.52586 4.54920 4.58212 4.63836 4.68838 4.74211 4.82198 4.86475 4.93227 5.07325 5.11092 5.13063 5.21378 5.24044 5.30367 5.34930 5.37723 5.44436 5.48794 5.50712 5.51796 5.55292 5.64473 5.69373 5.76266 5.86485 6.24674 6.48209 7.02937 7.15597 7.18202 7.84359 8.48401 9.26868 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.003151 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.712802 B = 8883.092463 C =10244.011061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 C -0.141 4.141 4 C 0.027 3.973 5 C -0.168 4.168 6 C -0.052 4.052 7 C 0.578 3.422 8 O -0.576 6.576 9 N -0.691 5.691 10 C 0.157 3.843 11 H 0.048 0.952 12 C -0.101 4.101 13 C -0.105 4.105 14 H 0.112 0.888 15 C -0.110 4.110 16 C 0.140 3.860 17 H 0.060 0.940 18 C -0.122 4.122 19 N -0.614 5.614 20 C -0.225 4.225 21 H 0.071 0.929 22 C -0.064 4.064 23 N -0.946 5.946 24 Si 0.962 3.038 25 H -0.299 1.299 26 H -0.292 1.292 27 H -0.268 1.268 28 C 0.186 3.814 29 N -0.271 5.271 30 C 0.087 3.913 31 N -0.298 5.298 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.192 0.808 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.021 0.979 46 H 0.086 0.914 47 H 0.242 0.758 48 H 0.008 0.992 49 H -0.002 1.002 50 H 0.089 0.911 51 H 0.114 0.886 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 9.936 -17.390 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.130 4.130 5 C -0.197 4.197 6 C -0.181 4.181 7 C 0.364 3.636 8 O -0.455 6.455 9 N -0.342 5.342 10 C 0.053 3.947 11 H 0.067 0.933 12 C -0.138 4.138 13 C -0.125 4.125 14 H 0.130 0.870 15 C -0.148 4.148 16 C 0.033 3.967 17 H 0.078 0.922 18 C -0.163 4.163 19 N -0.338 5.338 20 C -0.355 4.355 21 H 0.089 0.911 22 C -0.257 4.257 23 N -0.596 5.596 24 Si 0.792 3.208 25 H -0.227 1.227 26 H -0.218 1.218 27 H -0.193 1.193 28 C 0.062 3.938 29 N -0.058 5.058 30 C -0.053 4.053 31 N -0.131 5.131 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.209 0.791 40 H 0.254 0.746 41 H 0.126 0.874 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.126 0.874 45 H 0.040 0.960 46 H 0.104 0.896 47 H 0.051 0.949 48 H 0.026 0.974 49 H 0.016 0.984 50 H 0.107 0.893 51 H 0.132 0.868 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.455 8.004 -17.501 24.069 hybrid contribution 1.097 -0.976 0.820 1.682 sum -13.358 7.028 -16.681 22.496 Atomic orbital electron populations 1.21791 0.92890 1.01580 1.03273 1.19565 0.96382 0.95680 0.91236 1.21829 1.00859 0.93472 1.03672 1.22541 1.03354 0.89578 0.97501 1.22404 1.05012 1.00154 0.92108 1.21496 1.12667 0.90399 0.93504 1.17313 0.78114 0.83640 0.84517 1.90871 1.45982 1.37813 1.70863 1.45616 1.59186 1.15788 1.13622 1.21190 0.97359 0.97754 0.78382 0.93323 1.21902 1.03204 0.92798 0.95941 1.22791 0.96049 0.98724 0.94930 0.87030 1.22931 0.98157 0.93710 0.99995 1.21868 0.85150 0.95804 0.93838 0.92194 1.22664 0.98229 0.98655 0.96724 1.44840 1.01267 1.08662 1.79046 1.19291 0.90829 0.89906 1.35460 0.91118 1.25446 0.96569 1.00495 1.03211 1.70161 1.01742 1.30624 1.57087 0.85281 0.77808 0.80671 0.77025 1.22681 1.21815 1.19290 1.21086 0.91577 0.85097 0.96077 1.45700 1.44729 1.10235 1.05159 1.22335 1.01794 0.78748 1.02459 1.73100 1.17793 1.19184 1.03067 0.91861 0.90006 0.94042 0.90249 0.93265 0.90143 0.91054 0.79052 0.74577 0.87389 0.91416 0.91907 0.87354 0.95990 0.89572 0.94856 0.97357 0.98381 0.89277 0.86759 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.18 71.98 0.66 -1.03 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -1.51 8.79 71.98 0.63 -0.87 16 4 C 0.03 0.60 6.13 43.05 0.26 0.86 16 5 C -0.17 -3.62 9.65 22.66 0.22 -3.40 16 6 C -0.05 -1.53 6.96 40.79 0.28 -1.24 16 7 C 0.58 20.13 7.74 86.59 0.67 20.80 16 8 O -0.58 -26.18 14.49 -4.11 -0.06 -26.24 16 9 N -0.69 -19.67 5.06 -443.64 -2.25 -21.92 16 10 C 0.16 5.51 2.04 45.51 0.09 5.60 16 11 H 0.05 2.42 5.48 -2.39 -0.01 2.41 16 12 C -0.10 -2.70 4.96 30.93 0.15 -2.55 16 13 C -0.11 -3.38 4.33 -9.05 -0.04 -3.42 16 14 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 15 C -0.11 -3.23 6.19 32.17 0.20 -3.03 16 16 C 0.14 5.47 4.24 45.78 0.19 5.67 16 17 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 18 C -0.12 -4.34 5.42 31.40 0.17 -4.17 16 19 N -0.61 -31.39 2.43 -664.45 -1.61 -33.00 16 20 C -0.23 -13.21 10.28 84.03 0.86 -12.34 16 21 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.06 -3.87 5.48 84.86 0.47 -3.41 16 23 N -0.95 -59.30 10.38 21.65 0.22 -59.08 16 24 Si 0.96 49.29 29.56 68.60 2.03 51.32 16 25 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 26 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 27 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 28 C 0.19 9.03 4.10 86.85 0.36 9.38 16 29 N -0.27 -7.99 3.75 -356.03 -1.33 -9.33 16 30 C 0.09 2.30 10.71 127.77 1.37 3.67 16 31 N -0.30 -8.22 11.90 -47.49 -0.57 -8.79 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.62 7.37 -2.39 -0.02 0.60 16 39 H 0.19 2.56 7.08 -2.91 -0.02 2.54 16 40 H 0.42 7.82 7.67 -92.70 -0.71 7.11 16 41 H 0.11 1.89 7.97 -2.38 -0.02 1.87 16 42 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.11 2.25 7.77 -2.39 -0.02 2.23 16 45 H 0.02 0.93 8.12 -2.38 -0.02 0.91 16 46 H 0.09 2.33 8.03 -2.39 -0.02 2.31 16 47 H 0.24 14.90 8.31 -92.70 -0.77 14.13 16 48 H 0.01 0.47 6.02 -2.39 -0.01 0.45 16 49 H 0.00 -0.12 7.55 -2.39 -0.02 -0.13 16 50 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 52 H 0.09 2.75 6.55 -2.39 -0.02 2.74 16 Total: -1.00 -81.92 401.93 3.16 -78.76 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.21 Total: 17.92 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.51 Total: 10.34 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -5.53 Total: -132.11 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Total: -81.92 3.16 -78.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047176255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.591 kcal (2) G-P(sol) polarization free energy of solvation -81.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds