Wall clock time and date at job start Wed Apr 1 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47211 * 2 1 4 4 C 1.52993 * 109.47530 * 239.99423 * 2 1 3 5 5 C 1.50709 * 109.46873 * 119.99450 * 2 1 3 6 6 N 1.30448 * 125.98732 * 238.72186 * 5 2 1 7 7 N 1.39937 * 108.89343 * 180.26210 * 6 5 2 8 8 H 0.97005 * 125.75071 * 179.73703 * 7 6 5 9 9 C 1.34255 * 108.49272 * 359.73872 * 7 6 5 10 10 C 1.38040 * 107.41823 * 359.97438 * 9 7 6 11 11 C 1.47435 * 126.41674 * 179.97438 * 10 9 7 12 12 O 1.21599 * 119.99795 * 186.11343 * 11 10 9 13 13 N 1.34774 * 119.99691 * 6.12309 * 11 10 9 14 14 C 1.46500 * 119.99966 * 183.54665 * 13 11 10 15 15 H 1.09007 * 109.32214 * 54.26899 * 14 13 11 16 16 C 1.53031 * 109.32596 * 294.80170 * 14 13 11 17 17 C 1.53977 * 108.82566 * 295.14135 * 16 14 13 18 18 H 1.09001 * 112.99149 * 168.09085 * 17 16 14 19 19 C 1.55424 * 106.41351 * 293.82485 * 17 16 14 20 20 C 1.55167 * 100.35737 * 73.37464 * 19 17 16 21 21 H 1.08996 * 113.05229 * 162.97940 * 20 19 17 22 22 C 1.52987 * 109.32568 * 173.90766 * 14 13 11 23 23 N 1.47791 * 104.25371 * 40.54679 * 20 19 17 24 24 C 1.36935 * 125.85900 * 153.57765 * 23 20 19 25 25 H 1.08001 * 119.99926 * 5.19208 * 24 23 20 26 26 C 1.38813 * 120.00076 * 185.20059 * 24 23 20 27 27 N 1.31618 * 120.00242 * 2.07410 * 26 24 23 28 28 Si 1.86803 * 119.99742 * 182.08380 * 26 24 23 29 29 H 1.48498 * 109.47210 * 89.99606 * 28 26 24 30 30 H 1.48501 * 109.46755 * 209.99551 * 28 26 24 31 31 H 1.48503 * 109.47094 * 329.99487 * 28 26 24 32 32 C 1.47088 * 108.28796 * 333.54318 * 23 20 19 33 33 H 1.09004 * 109.47647 * 309.25665 * 1 2 3 34 34 H 1.09005 * 109.47057 * 69.25967 * 1 2 3 35 35 H 1.08999 * 109.47545 * 189.25282 * 1 2 3 36 36 H 1.09002 * 109.47154 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.46290 * 299.99456 * 3 2 1 38 38 H 1.08998 * 109.47451 * 59.99309 * 3 2 1 39 39 H 1.09009 * 109.47187 * 305.45542 * 4 2 1 40 40 H 1.08998 * 109.47357 * 65.45626 * 4 2 1 41 41 H 1.09002 * 109.47230 * 185.46175 * 4 2 1 42 42 H 1.08007 * 126.29379 * 180.02562 * 9 7 6 43 43 H 0.97000 * 120.00121 * 3.54943 * 13 11 10 44 44 H 1.08994 * 109.57780 * 175.34317 * 16 14 13 45 45 H 1.08999 * 109.57825 * 54.94286 * 16 14 13 46 46 H 1.08998 * 111.23758 * 191.15158 * 19 17 16 47 47 H 1.08998 * 111.23886 * 315.59431 * 19 17 16 48 48 H 1.08997 * 109.53447 * 305.29066 * 22 14 13 49 49 H 1.09002 * 109.59568 * 185.09607 * 22 14 13 50 50 H 0.96993 * 120.00131 * 180.02562 * 27 26 24 51 51 H 1.09003 * 109.97295 * 241.73801 * 32 23 20 52 52 H 1.09000 * 110.00767 * 120.47171 * 32 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7103 1.2306 6 7 2.8044 -0.1990 2.1493 7 7 3.0537 -1.1714 3.1243 8 1 3.6021 -1.0529 3.9157 9 6 2.4060 -2.2957 2.7799 10 6 1.7462 -2.0455 1.5935 11 6 0.9062 -2.9959 0.8418 12 8 0.4681 -2.6883 -0.2500 13 7 0.6239 -4.2055 1.3649 14 6 -0.1452 -5.1791 0.5860 15 1 0.3374 -5.3306 -0.3796 16 6 -1.5610 -4.6432 0.3618 17 6 -2.2735 -4.5374 1.7227 18 1 -3.2054 -3.9742 1.6727 19 6 -2.4436 -5.9918 2.2437 20 6 -0.9813 -6.3154 2.6496 21 1 -0.9031 -7.1773 3.3122 22 6 -0.1931 -6.5081 1.3421 23 7 -0.4955 -5.0713 3.2823 24 6 0.4939 -4.9841 4.2250 25 1 1.0503 -5.8658 4.5070 26 6 0.7815 -3.7627 4.8185 27 7 0.0763 -2.6964 4.5051 28 14 2.1697 -3.6322 6.0616 29 1 3.4360 -3.3070 5.3573 30 1 1.8583 -2.5597 7.0405 31 1 2.3183 -4.9259 6.7753 32 6 -1.2563 -3.9425 2.7250 33 1 -0.3634 0.6503 0.7957 34 1 -0.3633 0.3639 -0.9611 35 1 -0.3634 -1.0143 0.1652 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9562 -0.8901 38 1 1.6766 1.9564 0.8899 39 1 1.5991 -1.7170 -1.2992 40 1 1.7587 -0.1543 -2.1365 41 1 3.1256 -0.8068 -1.2015 42 1 2.4012 -3.2250 3.3303 43 1 0.9300 -4.4314 2.2572 44 1 -2.1113 -5.3252 -0.2864 45 1 -1.5095 -3.6578 -0.1012 46 1 -3.1096 -6.0270 3.1058 47 1 -2.7900 -6.6567 1.4525 48 1 0.8215 -6.8330 1.5727 49 1 -0.6859 -7.2611 0.7271 50 1 0.2776 -1.8429 4.9195 51 1 -0.5827 -3.2577 2.2099 52 1 -1.7825 -3.4176 3.5223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047178772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:19 Heat of formation + Delta-G solvation = 112.963330 kcal Electronic energy + Delta-G solvation = -34946.396343 eV Core-core repulsion = 30950.166683 eV Total energy + Delta-G solvation = -3996.229660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.10510 -40.26235 -37.60113 -36.12121 -33.79811 -33.06376 -30.81388 -30.62362 -30.21159 -29.55423 -27.64467 -26.62356 -26.58804 -25.29969 -23.21533 -22.74010 -22.13150 -21.16538 -19.73194 -19.24314 -18.59124 -17.89645 -17.65019 -16.86339 -15.89012 -15.09582 -14.96350 -14.72516 -14.49220 -14.36712 -13.98637 -13.71767 -13.56614 -13.37415 -13.08423 -12.55158 -12.48250 -12.27328 -12.08381 -11.84842 -11.79048 -11.68013 -11.65983 -11.53331 -11.47545 -11.11034 -10.97895 -10.83125 -10.69984 -10.61338 -10.50858 -10.46618 -10.26709 -9.90011 -9.80543 -9.64973 -9.58680 -9.35121 -8.99966 -8.81944 -8.59248 -8.04265 -7.29093 -6.95401 -5.96588 -3.34906 2.35118 2.85253 2.96503 3.16093 3.19322 3.33688 4.12142 4.26811 4.42230 4.98262 5.07862 5.23957 5.26755 5.32858 5.48816 5.54072 5.65117 5.69392 5.70397 5.83924 5.93293 5.96584 6.00193 6.08580 6.13136 6.18028 6.18741 6.23824 6.28553 6.31311 6.31947 6.37557 6.40963 6.51775 6.57961 6.60233 6.62200 6.64618 6.77593 6.89102 6.92065 6.96912 7.08252 7.12295 7.14743 7.41049 7.69567 7.69871 7.72448 7.78697 8.07394 8.19757 8.81141 8.96736 9.40697 9.52030 10.24752 11.06206 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.006726 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.231517 B = 4161.933186 C = 5992.819435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.024 3.976 3 C -0.135 4.135 4 C -0.154 4.154 5 C 0.143 3.857 6 N -0.315 5.315 7 N -0.475 5.475 8 H 0.434 0.566 9 C 0.141 3.859 10 C -0.276 4.276 11 C 0.587 3.413 12 O -0.563 6.563 13 N -0.695 5.695 14 C 0.165 3.835 15 H 0.057 0.943 16 C -0.126 4.126 17 C -0.119 4.119 18 H 0.073 0.927 19 C -0.126 4.126 20 C 0.151 3.849 21 H 0.065 0.935 22 C -0.142 4.142 23 N -0.595 5.595 24 C -0.248 4.248 25 H 0.081 0.919 26 C -0.007 4.007 27 N -0.885 5.885 28 Si 0.882 3.118 29 H -0.288 1.288 30 H -0.286 1.286 31 H -0.276 1.276 32 C 0.147 3.853 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.037 0.963 42 H 0.188 0.812 43 H 0.432 0.568 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.256 0.744 51 H 0.082 0.918 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 -1.552 -6.269 6.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.022 3.978 3 C -0.192 4.192 4 C -0.211 4.211 5 C -0.026 4.026 6 N -0.136 5.136 7 N -0.179 5.179 8 H 0.277 0.723 9 C -0.011 4.011 10 C -0.291 4.291 11 C 0.376 3.624 12 O -0.447 6.447 13 N -0.358 5.358 14 C 0.059 3.941 15 H 0.075 0.925 16 C -0.164 4.164 17 C -0.138 4.138 18 H 0.091 0.909 19 C -0.165 4.165 20 C 0.043 3.957 21 H 0.083 0.917 22 C -0.182 4.182 23 N -0.321 5.321 24 C -0.377 4.377 25 H 0.099 0.901 26 C -0.206 4.206 27 N -0.529 5.529 28 Si 0.712 3.288 29 H -0.215 1.215 30 H -0.211 1.211 31 H -0.201 1.201 32 C 0.023 3.977 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.204 0.796 43 H 0.284 0.716 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.099 0.901 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.928 -0.161 -6.408 6.693 hybrid contribution 0.637 -0.678 1.817 2.041 sum 2.565 -0.839 -4.591 5.325 Atomic orbital electron populations 1.22029 0.92971 1.04919 1.00212 1.18842 0.96083 0.93244 0.89607 1.21817 1.00896 0.95370 1.01129 1.22218 0.99831 1.04436 0.94653 1.22235 0.93709 0.91889 0.94757 1.76953 1.23035 1.13117 1.00533 1.45992 1.41035 1.09193 1.21648 0.72338 1.23573 0.90566 0.92526 0.94428 1.20020 1.12245 0.96574 1.00224 1.17178 0.79185 0.81603 0.84387 1.90417 1.55253 1.77254 1.21792 1.47233 1.53309 1.13337 1.21890 1.20545 0.91698 0.88349 0.93498 0.92472 1.22107 0.95266 1.02167 0.96873 1.22806 0.98830 0.96041 0.96173 0.90899 1.22941 0.97199 0.96790 0.99550 1.21603 0.91537 0.90847 0.91686 0.91713 1.22532 1.01217 0.95658 0.98776 1.44925 1.40877 1.01099 1.45232 1.19149 1.08980 0.94814 1.14715 0.90086 1.24898 0.99917 0.96407 0.99350 1.70008 1.39476 0.99309 1.44145 0.86697 0.81418 0.78387 0.82333 1.21535 1.21139 1.20070 1.22128 0.92096 0.90135 0.93368 0.94017 0.93079 0.88805 0.92852 0.92942 0.92728 0.87524 0.93322 0.94334 0.79569 0.71589 0.92865 0.90257 0.92323 0.92261 0.92203 0.91889 0.93281 0.90053 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.19 37.15 0.30 -2.22 16 2 C 0.02 0.42 0.75 -155.66 -0.12 0.31 16 3 C -0.13 -2.05 7.95 37.16 0.30 -1.75 16 4 C -0.15 -2.53 8.24 37.15 0.31 -2.22 16 5 C 0.14 2.79 5.64 -82.02 -0.46 2.33 16 6 N -0.31 -6.07 11.93 33.90 0.40 -5.66 16 7 N -0.48 -8.66 7.29 30.85 0.22 -8.44 16 8 H 0.43 6.72 8.96 -182.72 -1.64 5.08 16 9 C 0.14 2.78 9.27 -16.56 -0.15 2.63 16 10 C -0.28 -5.64 5.91 -105.07 -0.62 -6.26 16 11 C 0.59 11.99 5.32 -12.52 -0.07 11.93 16 12 O -0.56 -11.51 8.57 5.28 0.05 -11.47 16 13 N -0.69 -13.63 2.79 -54.87 -0.15 -13.78 16 14 C 0.16 2.88 2.79 -67.92 -0.19 2.69 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.13 -2.16 5.11 -26.21 -0.13 -2.30 16 17 C -0.12 -2.18 4.33 -87.92 -0.38 -2.56 16 18 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 19 C -0.13 -2.09 6.18 -24.30 -0.15 -2.24 16 20 C 0.15 2.69 4.30 -65.61 -0.28 2.41 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 22 C -0.14 -2.26 5.40 -26.28 -0.14 -2.40 16 23 N -0.60 -12.59 1.76 -161.37 -0.28 -12.87 16 24 C -0.25 -5.61 8.41 -15.06 -0.13 -5.73 16 25 H 0.08 1.80 7.83 -52.49 -0.41 1.38 16 26 C -0.01 -0.16 3.23 -17.43 -0.06 -0.21 16 27 N -0.88 -21.54 9.25 55.49 0.51 -21.03 16 28 Si 0.88 18.10 27.78 -169.99 -4.72 13.37 16 29 H -0.29 -5.43 7.03 56.52 0.40 -5.03 16 30 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 31 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 32 C 0.15 3.21 3.93 -2.82 -0.01 3.20 16 33 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.09 1.88 4.69 -51.93 -0.24 1.64 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.11 1.96 4.60 -51.92 -0.24 1.73 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.19 3.79 3.85 -52.48 -0.20 3.59 16 43 H 0.43 8.94 3.14 -40.82 -0.13 8.82 16 44 H 0.05 0.80 7.97 -51.93 -0.41 0.39 16 45 H 0.08 1.51 6.32 -51.93 -0.33 1.18 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 0.85 7.75 -51.93 -0.40 0.44 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.06 0.85 8.00 -51.93 -0.42 0.44 16 50 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 51 H 0.08 1.88 3.44 -58.41 -0.20 1.68 16 52 H 0.04 1.08 7.06 -51.93 -0.37 0.72 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -24.73 365.16 -9.65 -34.39 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -9.20 Total: 22.39 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.99 Total: -2.41 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.71 Total: -61.78 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.05 Total: -11.47 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -4.72 Total: 13.37 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -24.73 -9.65 -34.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047178772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.349 kcal (2) G-P(sol) polarization free energy of solvation -24.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds