Wall clock time and date at job start Wed Apr 1 2020 05:39:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.53002 * 109.47211 * 2 1
4 4 C 1.52993 * 109.47530 * 239.99423 * 2 1 3
5 5 C 1.50709 * 109.46873 * 119.99450 * 2 1 3
6 6 N 1.30448 * 125.98732 * 238.72186 * 5 2 1
7 7 N 1.39937 * 108.89343 * 180.26210 * 6 5 2
8 8 H 0.97005 * 125.75071 * 179.73703 * 7 6 5
9 9 C 1.34255 * 108.49272 * 359.73872 * 7 6 5
10 10 C 1.38040 * 107.41823 * 359.97438 * 9 7 6
11 11 C 1.47435 * 126.41674 * 179.97438 * 10 9 7
12 12 O 1.21599 * 119.99795 * 186.11343 * 11 10 9
13 13 N 1.34774 * 119.99691 * 6.12309 * 11 10 9
14 14 C 1.46500 * 119.99966 * 183.54665 * 13 11 10
15 15 H 1.09007 * 109.32214 * 54.26899 * 14 13 11
16 16 C 1.53031 * 109.32596 * 294.80170 * 14 13 11
17 17 C 1.53977 * 108.82566 * 295.14135 * 16 14 13
18 18 H 1.09001 * 112.99149 * 168.09085 * 17 16 14
19 19 C 1.55424 * 106.41351 * 293.82485 * 17 16 14
20 20 C 1.55167 * 100.35737 * 73.37464 * 19 17 16
21 21 H 1.08996 * 113.05229 * 162.97940 * 20 19 17
22 22 C 1.52987 * 109.32568 * 173.90766 * 14 13 11
23 23 N 1.47791 * 104.25371 * 40.54679 * 20 19 17
24 24 C 1.36935 * 125.85900 * 153.57765 * 23 20 19
25 25 H 1.08001 * 119.99926 * 5.19208 * 24 23 20
26 26 C 1.38813 * 120.00076 * 185.20059 * 24 23 20
27 27 N 1.31618 * 120.00242 * 2.07410 * 26 24 23
28 28 Si 1.86803 * 119.99742 * 182.08380 * 26 24 23
29 29 H 1.48498 * 109.47210 * 89.99606 * 28 26 24
30 30 H 1.48501 * 109.46755 * 209.99551 * 28 26 24
31 31 H 1.48503 * 109.47094 * 329.99487 * 28 26 24
32 32 C 1.47088 * 108.28796 * 333.54318 * 23 20 19
33 33 H 1.09004 * 109.47647 * 309.25665 * 1 2 3
34 34 H 1.09005 * 109.47057 * 69.25967 * 1 2 3
35 35 H 1.08999 * 109.47545 * 189.25282 * 1 2 3
36 36 H 1.09002 * 109.47154 * 180.02562 * 3 2 1
37 37 H 1.08999 * 109.46290 * 299.99456 * 3 2 1
38 38 H 1.08998 * 109.47451 * 59.99309 * 3 2 1
39 39 H 1.09009 * 109.47187 * 305.45542 * 4 2 1
40 40 H 1.08998 * 109.47357 * 65.45626 * 4 2 1
41 41 H 1.09002 * 109.47230 * 185.46175 * 4 2 1
42 42 H 1.08007 * 126.29379 * 180.02562 * 9 7 6
43 43 H 0.97000 * 120.00121 * 3.54943 * 13 11 10
44 44 H 1.08994 * 109.57780 * 175.34317 * 16 14 13
45 45 H 1.08999 * 109.57825 * 54.94286 * 16 14 13
46 46 H 1.08998 * 111.23758 * 191.15158 * 19 17 16
47 47 H 1.08998 * 111.23886 * 315.59431 * 19 17 16
48 48 H 1.08997 * 109.53447 * 305.29066 * 22 14 13
49 49 H 1.09002 * 109.59568 * 185.09607 * 22 14 13
50 50 H 0.96993 * 120.00131 * 180.02562 * 27 26 24
51 51 H 1.09003 * 109.97295 * 241.73801 * 32 23 20
52 52 H 1.09000 * 110.00767 * 120.47171 * 32 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 2.0322 -0.7103 1.2306
6 7 2.8044 -0.1990 2.1493
7 7 3.0537 -1.1714 3.1243
8 1 3.6021 -1.0529 3.9157
9 6 2.4060 -2.2957 2.7799
10 6 1.7462 -2.0455 1.5935
11 6 0.9062 -2.9959 0.8418
12 8 0.4681 -2.6883 -0.2500
13 7 0.6239 -4.2055 1.3649
14 6 -0.1452 -5.1791 0.5860
15 1 0.3374 -5.3306 -0.3796
16 6 -1.5610 -4.6432 0.3618
17 6 -2.2735 -4.5374 1.7227
18 1 -3.2054 -3.9742 1.6727
19 6 -2.4436 -5.9918 2.2437
20 6 -0.9813 -6.3154 2.6496
21 1 -0.9031 -7.1773 3.3122
22 6 -0.1931 -6.5081 1.3421
23 7 -0.4955 -5.0713 3.2823
24 6 0.4939 -4.9841 4.2250
25 1 1.0503 -5.8658 4.5070
26 6 0.7815 -3.7627 4.8185
27 7 0.0763 -2.6964 4.5051
28 14 2.1697 -3.6322 6.0616
29 1 3.4360 -3.3070 5.3573
30 1 1.8583 -2.5597 7.0405
31 1 2.3183 -4.9259 6.7753
32 6 -1.2563 -3.9425 2.7250
33 1 -0.3634 0.6503 0.7957
34 1 -0.3633 0.3639 -0.9611
35 1 -0.3634 -1.0143 0.1652
36 1 3.1300 1.4425 -0.0005
37 1 1.6766 1.9562 -0.8901
38 1 1.6766 1.9564 0.8899
39 1 1.5991 -1.7170 -1.2992
40 1 1.7587 -0.1543 -2.1365
41 1 3.1256 -0.8068 -1.2015
42 1 2.4012 -3.2250 3.3303
43 1 0.9300 -4.4314 2.2572
44 1 -2.1113 -5.3252 -0.2864
45 1 -1.5095 -3.6578 -0.1012
46 1 -3.1096 -6.0270 3.1058
47 1 -2.7900 -6.6567 1.4525
48 1 0.8215 -6.8330 1.5727
49 1 -0.6859 -7.2611 0.7271
50 1 0.2776 -1.8429 4.9195
51 1 -0.5827 -3.2577 2.2099
52 1 -1.7825 -3.4176 3.5223
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001047178772.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:39:18
Heat of formation + Delta-G solvation = 100.936561 kcal
Electronic energy + Delta-G solvation = -34946.917863 eV
Core-core repulsion = 30950.166683 eV
Total energy + Delta-G solvation = -3996.751180 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-42.59955 -41.74234 -39.11486 -37.49465 -35.45443 -34.55280 -32.40197 -32.07950
-31.72144 -31.07292 -29.12177 -27.96435 -27.89212 -26.94205 -24.77519 -24.22237
-23.57280 -22.59476 -21.30128 -20.73082 -20.07480 -19.43691 -19.07315 -18.49218
-17.41671 -16.63852 -16.52417 -16.29297 -15.98115 -15.78789 -15.44728 -15.25802
-14.96695 -14.83429 -14.54458 -14.00678 -13.90241 -13.78863 -13.56397 -13.33495
-13.24554 -13.09831 -12.95284 -12.89484 -12.85274 -12.63936 -12.54198 -12.31875
-12.18922 -12.04958 -11.92361 -11.86635 -11.81463 -11.53338 -11.26715 -11.16184
-10.98884 -10.78861 -10.68626 -10.33476 -10.10390 -9.57936 -8.82408 -8.65693
-7.73634 -5.12556 0.80890 1.31387 1.33975 1.49003 1.50089 1.89302
2.42662 2.74616 2.95142 3.33379 3.57101 3.73188 3.86372 3.93202
4.10154 4.18083 4.21852 4.22880 4.33389 4.46184 4.52618 4.57652
4.60176 4.71733 4.74133 4.80037 4.88343 4.90411 4.93367 4.99855
5.01439 5.02071 5.09703 5.19094 5.22569 5.23599 5.25819 5.28784
5.38126 5.48901 5.51443 5.57915 5.63587 5.65943 5.69403 5.74635
5.93428 6.03597 6.25749 6.29501 6.30570 6.69127 7.12377 7.30438
7.82796 7.85982 8.52766 9.26547
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.010559 B = 0.006726 C = 0.004671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2651.231517 B = 4161.933186 C = 5992.819435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.020 3.980
3 C -0.127 4.127
4 C -0.146 4.146
5 C 0.132 3.868
6 N -0.320 5.320
7 N -0.468 5.468
8 H 0.444 0.556
9 C 0.139 3.861
10 C -0.294 4.294
11 C 0.580 3.420
12 O -0.567 6.567
13 N -0.698 5.698
14 C 0.157 3.843
15 H 0.064 0.936
16 C -0.116 4.116
17 C -0.119 4.119
18 H 0.073 0.927
19 C -0.114 4.114
20 C 0.141 3.859
21 H 0.071 0.929
22 C -0.130 4.130
23 N -0.604 5.604
24 C -0.250 4.250
25 H 0.085 0.915
26 C -0.037 4.037
27 N -0.904 5.904
28 Si 0.923 3.077
29 H -0.263 1.263
30 H -0.306 1.306
31 H -0.277 1.277
32 C 0.155 3.845
33 H 0.032 0.968
34 H 0.072 0.928
35 H 0.067 0.933
36 H 0.053 0.947
37 H 0.077 0.923
38 H 0.044 0.956
39 H 0.086 0.914
40 H 0.071 0.929
41 H 0.038 0.962
42 H 0.182 0.818
43 H 0.426 0.574
44 H 0.085 0.915
45 H 0.056 0.944
46 H 0.049 0.951
47 H 0.095 0.905
48 H 0.058 0.942
49 H 0.100 0.900
50 H 0.241 0.759
51 H 0.068 0.932
52 H -0.009 1.009
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.689 -2.796 -7.922 8.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.018 3.982
3 C -0.184 4.184
4 C -0.203 4.203
5 C -0.037 4.037
6 N -0.142 5.142
7 N -0.173 5.173
8 H 0.289 0.711
9 C -0.014 4.014
10 C -0.309 4.309
11 C 0.369 3.631
12 O -0.451 6.451
13 N -0.359 5.359
14 C 0.052 3.948
15 H 0.082 0.918
16 C -0.154 4.154
17 C -0.138 4.138
18 H 0.091 0.909
19 C -0.152 4.152
20 C 0.035 3.965
21 H 0.089 0.911
22 C -0.170 4.170
23 N -0.330 5.330
24 C -0.379 4.379
25 H 0.103 0.897
26 C -0.234 4.234
27 N -0.550 5.550
28 Si 0.751 3.249
29 H -0.189 1.189
30 H -0.233 1.233
31 H -0.202 1.202
32 C 0.030 3.970
33 H 0.051 0.949
34 H 0.091 0.909
35 H 0.085 0.915
36 H 0.072 0.928
37 H 0.096 0.904
38 H 0.063 0.937
39 H 0.105 0.895
40 H 0.090 0.910
41 H 0.057 0.943
42 H 0.199 0.801
43 H 0.277 0.723
44 H 0.103 0.897
45 H 0.075 0.925
46 H 0.068 0.932
47 H 0.114 0.886
48 H 0.077 0.923
49 H 0.118 0.882
50 H 0.051 0.949
51 H 0.086 0.914
52 H 0.010 0.990
Dipole moment (debyes) X Y Z Total
from point charges 2.158 -1.443 -8.078 8.485
hybrid contribution 0.527 -0.321 2.368 2.447
sum 2.685 -1.763 -5.710 6.552
Atomic orbital electron populations
1.21938 0.93381 1.03096 1.01065 1.18992 0.95708 0.94446 0.89038
1.21749 1.00859 0.93911 1.01913 1.22110 0.99591 1.03537 0.95090
1.22678 0.93610 0.91839 0.95531 1.76909 1.23269 1.13316 1.00705
1.46009 1.40814 1.08632 1.21873 0.71066 1.23452 0.90904 0.92669
0.94359 1.20265 1.12627 0.97276 1.00707 1.17266 0.79377 0.81955
0.84471 1.90413 1.55444 1.77383 1.21906 1.47290 1.53402 1.13510
1.21729 1.20785 0.91558 0.88668 0.93818 0.91801 1.22012 0.95362
1.01802 0.96216 1.22758 0.97949 0.97112 0.95999 0.90852 1.22904
0.96232 0.95853 1.00226 1.21868 0.92578 0.89566 0.92511 0.91108
1.22437 1.01247 0.95498 0.97791 1.45034 1.40529 1.02296 1.45161
1.19378 1.09179 0.94780 1.14525 0.89688 1.25284 1.01342 0.96176
1.00552 1.70230 1.40770 0.99045 1.44966 0.86047 0.80969 0.77319
0.80515 1.18917 1.23331 1.20235 1.21900 0.92256 0.90437 0.92396
0.94859 0.90873 0.91454 0.92784 0.90422 0.93672 0.89529 0.91003
0.94307 0.80131 0.72282 0.89657 0.92503 0.93205 0.88634 0.92311
0.88208 0.94855 0.91422 0.99038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.78 8.19 71.98 0.59 -4.19 16
2 C 0.02 0.69 0.75 -52.93 -0.04 0.65 16
3 C -0.13 -3.66 7.95 71.98 0.57 -3.09 16
4 C -0.15 -4.60 8.24 71.98 0.59 -4.00 16
5 C 0.13 5.18 5.64 43.52 0.25 5.43 16
6 N -0.32 -12.34 11.93 -46.67 -0.56 -12.90 16
7 N -0.47 -17.13 7.29 -56.32 -0.41 -17.54 16
8 H 0.44 13.64 8.96 -213.42 -1.91 11.73 16
9 C 0.14 5.55 9.27 84.28 0.78 6.33 16
10 C -0.29 -12.22 5.91 -20.15 -0.12 -12.34 16
11 C 0.58 23.97 5.32 86.67 0.46 24.43 16
12 O -0.57 -23.32 8.57 -4.03 -0.03 -23.36 16
13 N -0.70 -27.26 2.79 -445.76 -1.24 -28.50 16
14 C 0.16 5.17 2.79 45.00 0.13 5.30 16
15 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16
16 C -0.12 -3.75 5.11 30.93 0.16 -3.59 16
17 C -0.12 -4.24 4.33 -9.05 -0.04 -4.28 16
18 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16
19 C -0.11 -3.48 6.18 32.17 0.20 -3.28 16
20 C 0.14 4.73 4.30 45.79 0.20 4.92 16
21 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
22 C -0.13 -3.73 5.40 30.89 0.17 -3.56 16
23 N -0.60 -25.46 1.76 -664.44 -1.17 -26.63 16
24 C -0.25 -11.32 8.41 84.03 0.71 -10.61 16
25 H 0.09 3.72 7.83 -2.91 -0.02 3.70 16
26 C -0.04 -1.72 3.23 84.86 0.27 -1.44 16
27 N -0.90 -45.75 9.25 21.65 0.20 -45.55 16
28 Si 0.92 37.42 27.78 68.60 1.91 39.32 16
29 H -0.26 -9.48 7.03 99.48 0.70 -8.78 16
30 H -0.31 -13.42 7.11 99.48 0.71 -12.72 16
31 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16
32 C 0.15 6.91 3.93 86.85 0.34 7.26 16
33 H 0.03 1.17 8.12 -2.38 -0.02 1.15 16
34 H 0.07 2.16 8.12 -2.38 -0.02 2.14 16
35 H 0.07 2.75 4.69 -2.39 -0.01 2.73 16
36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
39 H 0.09 3.14 4.60 -2.39 -0.01 3.13 16
40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
42 H 0.18 7.44 3.85 -2.91 -0.01 7.43 16
43 H 0.43 17.70 3.14 -92.71 -0.29 17.41 16
44 H 0.08 2.23 7.97 -2.39 -0.02 2.21 16
45 H 0.06 2.12 6.32 -2.39 -0.02 2.10 16
46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16
47 H 0.10 2.26 7.75 -2.39 -0.02 2.24 16
48 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
49 H 0.10 2.18 8.00 -2.39 -0.02 2.16 16
50 H 0.24 12.61 8.31 -92.71 -0.77 11.84 16
51 H 0.07 3.23 3.44 -15.19 -0.05 3.18 16
52 H -0.01 -0.47 7.06 -2.39 -0.02 -0.48 16
Total: -1.00 -55.28 365.16 2.61 -52.67
By element:
Atomic # 1 Polarization: 59.83 SS G_CDS: -1.29 Total: 58.54 kcal
Atomic # 6 Polarization: -1.28 SS G_CDS: 5.21 Total: 3.93 kcal
Atomic # 7 Polarization: -127.93 SS G_CDS: -3.18 Total: -131.11 kcal
Atomic # 8 Polarization: -23.32 SS G_CDS: -0.03 Total: -23.36 kcal
Atomic # 14 Polarization: 37.42 SS G_CDS: 1.91 Total: 39.32 kcal
Total: -55.28 2.61 -52.67 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001047178772.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.605 kcal
(2) G-P(sol) polarization free energy of solvation -55.281 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.324 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.937 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds