Wall clock time and date at job start Wed Apr 1 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47211 * 2 1 4 4 C 1.52993 * 109.47530 * 239.99423 * 2 1 3 5 5 C 1.50709 * 109.46873 * 119.99450 * 2 1 3 6 6 N 1.30448 * 125.98732 * 238.72186 * 5 2 1 7 7 N 1.39937 * 108.89343 * 180.26210 * 6 5 2 8 8 H 0.97005 * 125.75071 * 179.73703 * 7 6 5 9 9 C 1.34255 * 108.49272 * 359.73872 * 7 6 5 10 10 C 1.38040 * 107.41823 * 359.97438 * 9 7 6 11 11 C 1.47435 * 126.41674 * 179.97438 * 10 9 7 12 12 O 1.21599 * 119.99795 * 186.11343 * 11 10 9 13 13 N 1.34774 * 119.99691 * 6.12309 * 11 10 9 14 14 C 1.46500 * 119.99966 * 183.54665 * 13 11 10 15 15 H 1.09007 * 109.32214 * 54.26899 * 14 13 11 16 16 C 1.53031 * 109.32596 * 294.80170 * 14 13 11 17 17 C 1.53977 * 108.82566 * 295.14135 * 16 14 13 18 18 H 1.09001 * 112.99149 * 168.09085 * 17 16 14 19 19 C 1.55424 * 106.41351 * 293.82485 * 17 16 14 20 20 C 1.55167 * 100.35737 * 73.37464 * 19 17 16 21 21 H 1.08996 * 113.05229 * 162.97940 * 20 19 17 22 22 C 1.52987 * 109.32568 * 173.90766 * 14 13 11 23 23 N 1.47791 * 104.25371 * 40.54679 * 20 19 17 24 24 C 1.36935 * 125.85900 * 153.57765 * 23 20 19 25 25 H 1.08001 * 119.99926 * 5.19208 * 24 23 20 26 26 C 1.38813 * 120.00076 * 185.20059 * 24 23 20 27 27 N 1.31618 * 120.00242 * 2.07410 * 26 24 23 28 28 Si 1.86803 * 119.99742 * 182.08380 * 26 24 23 29 29 H 1.48498 * 109.47210 * 89.99606 * 28 26 24 30 30 H 1.48501 * 109.46755 * 209.99551 * 28 26 24 31 31 H 1.48503 * 109.47094 * 329.99487 * 28 26 24 32 32 C 1.47088 * 108.28796 * 333.54318 * 23 20 19 33 33 H 1.09004 * 109.47647 * 309.25665 * 1 2 3 34 34 H 1.09005 * 109.47057 * 69.25967 * 1 2 3 35 35 H 1.08999 * 109.47545 * 189.25282 * 1 2 3 36 36 H 1.09002 * 109.47154 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.46290 * 299.99456 * 3 2 1 38 38 H 1.08998 * 109.47451 * 59.99309 * 3 2 1 39 39 H 1.09009 * 109.47187 * 305.45542 * 4 2 1 40 40 H 1.08998 * 109.47357 * 65.45626 * 4 2 1 41 41 H 1.09002 * 109.47230 * 185.46175 * 4 2 1 42 42 H 1.08007 * 126.29379 * 180.02562 * 9 7 6 43 43 H 0.97000 * 120.00121 * 3.54943 * 13 11 10 44 44 H 1.08994 * 109.57780 * 175.34317 * 16 14 13 45 45 H 1.08999 * 109.57825 * 54.94286 * 16 14 13 46 46 H 1.08998 * 111.23758 * 191.15158 * 19 17 16 47 47 H 1.08998 * 111.23886 * 315.59431 * 19 17 16 48 48 H 1.08997 * 109.53447 * 305.29066 * 22 14 13 49 49 H 1.09002 * 109.59568 * 185.09607 * 22 14 13 50 50 H 0.96993 * 120.00131 * 180.02562 * 27 26 24 51 51 H 1.09003 * 109.97295 * 241.73801 * 32 23 20 52 52 H 1.09000 * 110.00767 * 120.47171 * 32 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7103 1.2306 6 7 2.8044 -0.1990 2.1493 7 7 3.0537 -1.1714 3.1243 8 1 3.6021 -1.0529 3.9157 9 6 2.4060 -2.2957 2.7799 10 6 1.7462 -2.0455 1.5935 11 6 0.9062 -2.9959 0.8418 12 8 0.4681 -2.6883 -0.2500 13 7 0.6239 -4.2055 1.3649 14 6 -0.1452 -5.1791 0.5860 15 1 0.3374 -5.3306 -0.3796 16 6 -1.5610 -4.6432 0.3618 17 6 -2.2735 -4.5374 1.7227 18 1 -3.2054 -3.9742 1.6727 19 6 -2.4436 -5.9918 2.2437 20 6 -0.9813 -6.3154 2.6496 21 1 -0.9031 -7.1773 3.3122 22 6 -0.1931 -6.5081 1.3421 23 7 -0.4955 -5.0713 3.2823 24 6 0.4939 -4.9841 4.2250 25 1 1.0503 -5.8658 4.5070 26 6 0.7815 -3.7627 4.8185 27 7 0.0763 -2.6964 4.5051 28 14 2.1697 -3.6322 6.0616 29 1 3.4360 -3.3070 5.3573 30 1 1.8583 -2.5597 7.0405 31 1 2.3183 -4.9259 6.7753 32 6 -1.2563 -3.9425 2.7250 33 1 -0.3634 0.6503 0.7957 34 1 -0.3633 0.3639 -0.9611 35 1 -0.3634 -1.0143 0.1652 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9562 -0.8901 38 1 1.6766 1.9564 0.8899 39 1 1.5991 -1.7170 -1.2992 40 1 1.7587 -0.1543 -2.1365 41 1 3.1256 -0.8068 -1.2015 42 1 2.4012 -3.2250 3.3303 43 1 0.9300 -4.4314 2.2572 44 1 -2.1113 -5.3252 -0.2864 45 1 -1.5095 -3.6578 -0.1012 46 1 -3.1096 -6.0270 3.1058 47 1 -2.7900 -6.6567 1.4525 48 1 0.8215 -6.8330 1.5727 49 1 -0.6859 -7.2611 0.7271 50 1 0.2776 -1.8429 4.9195 51 1 -0.5827 -3.2577 2.2099 52 1 -1.7825 -3.4176 3.5223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047178772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:18 Heat of formation + Delta-G solvation = 100.936561 kcal Electronic energy + Delta-G solvation = -34946.917863 eV Core-core repulsion = 30950.166683 eV Total energy + Delta-G solvation = -3996.751180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.59955 -41.74234 -39.11486 -37.49465 -35.45443 -34.55280 -32.40197 -32.07950 -31.72144 -31.07292 -29.12177 -27.96435 -27.89212 -26.94205 -24.77519 -24.22237 -23.57280 -22.59476 -21.30128 -20.73082 -20.07480 -19.43691 -19.07315 -18.49218 -17.41671 -16.63852 -16.52417 -16.29297 -15.98115 -15.78789 -15.44728 -15.25802 -14.96695 -14.83429 -14.54458 -14.00678 -13.90241 -13.78863 -13.56397 -13.33495 -13.24554 -13.09831 -12.95284 -12.89484 -12.85274 -12.63936 -12.54198 -12.31875 -12.18922 -12.04958 -11.92361 -11.86635 -11.81463 -11.53338 -11.26715 -11.16184 -10.98884 -10.78861 -10.68626 -10.33476 -10.10390 -9.57936 -8.82408 -8.65693 -7.73634 -5.12556 0.80890 1.31387 1.33975 1.49003 1.50089 1.89302 2.42662 2.74616 2.95142 3.33379 3.57101 3.73188 3.86372 3.93202 4.10154 4.18083 4.21852 4.22880 4.33389 4.46184 4.52618 4.57652 4.60176 4.71733 4.74133 4.80037 4.88343 4.90411 4.93367 4.99855 5.01439 5.02071 5.09703 5.19094 5.22569 5.23599 5.25819 5.28784 5.38126 5.48901 5.51443 5.57915 5.63587 5.65943 5.69403 5.74635 5.93428 6.03597 6.25749 6.29501 6.30570 6.69127 7.12377 7.30438 7.82796 7.85982 8.52766 9.26547 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.006726 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.231517 B = 4161.933186 C = 5992.819435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.020 3.980 3 C -0.127 4.127 4 C -0.146 4.146 5 C 0.132 3.868 6 N -0.320 5.320 7 N -0.468 5.468 8 H 0.444 0.556 9 C 0.139 3.861 10 C -0.294 4.294 11 C 0.580 3.420 12 O -0.567 6.567 13 N -0.698 5.698 14 C 0.157 3.843 15 H 0.064 0.936 16 C -0.116 4.116 17 C -0.119 4.119 18 H 0.073 0.927 19 C -0.114 4.114 20 C 0.141 3.859 21 H 0.071 0.929 22 C -0.130 4.130 23 N -0.604 5.604 24 C -0.250 4.250 25 H 0.085 0.915 26 C -0.037 4.037 27 N -0.904 5.904 28 Si 0.923 3.077 29 H -0.263 1.263 30 H -0.306 1.306 31 H -0.277 1.277 32 C 0.155 3.845 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.182 0.818 43 H 0.426 0.574 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.095 0.905 48 H 0.058 0.942 49 H 0.100 0.900 50 H 0.241 0.759 51 H 0.068 0.932 52 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 -2.796 -7.922 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 C -0.184 4.184 4 C -0.203 4.203 5 C -0.037 4.037 6 N -0.142 5.142 7 N -0.173 5.173 8 H 0.289 0.711 9 C -0.014 4.014 10 C -0.309 4.309 11 C 0.369 3.631 12 O -0.451 6.451 13 N -0.359 5.359 14 C 0.052 3.948 15 H 0.082 0.918 16 C -0.154 4.154 17 C -0.138 4.138 18 H 0.091 0.909 19 C -0.152 4.152 20 C 0.035 3.965 21 H 0.089 0.911 22 C -0.170 4.170 23 N -0.330 5.330 24 C -0.379 4.379 25 H 0.103 0.897 26 C -0.234 4.234 27 N -0.550 5.550 28 Si 0.751 3.249 29 H -0.189 1.189 30 H -0.233 1.233 31 H -0.202 1.202 32 C 0.030 3.970 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.199 0.801 43 H 0.277 0.723 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.114 0.886 48 H 0.077 0.923 49 H 0.118 0.882 50 H 0.051 0.949 51 H 0.086 0.914 52 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 2.158 -1.443 -8.078 8.485 hybrid contribution 0.527 -0.321 2.368 2.447 sum 2.685 -1.763 -5.710 6.552 Atomic orbital electron populations 1.21938 0.93381 1.03096 1.01065 1.18992 0.95708 0.94446 0.89038 1.21749 1.00859 0.93911 1.01913 1.22110 0.99591 1.03537 0.95090 1.22678 0.93610 0.91839 0.95531 1.76909 1.23269 1.13316 1.00705 1.46009 1.40814 1.08632 1.21873 0.71066 1.23452 0.90904 0.92669 0.94359 1.20265 1.12627 0.97276 1.00707 1.17266 0.79377 0.81955 0.84471 1.90413 1.55444 1.77383 1.21906 1.47290 1.53402 1.13510 1.21729 1.20785 0.91558 0.88668 0.93818 0.91801 1.22012 0.95362 1.01802 0.96216 1.22758 0.97949 0.97112 0.95999 0.90852 1.22904 0.96232 0.95853 1.00226 1.21868 0.92578 0.89566 0.92511 0.91108 1.22437 1.01247 0.95498 0.97791 1.45034 1.40529 1.02296 1.45161 1.19378 1.09179 0.94780 1.14525 0.89688 1.25284 1.01342 0.96176 1.00552 1.70230 1.40770 0.99045 1.44966 0.86047 0.80969 0.77319 0.80515 1.18917 1.23331 1.20235 1.21900 0.92256 0.90437 0.92396 0.94859 0.90873 0.91454 0.92784 0.90422 0.93672 0.89529 0.91003 0.94307 0.80131 0.72282 0.89657 0.92503 0.93205 0.88634 0.92311 0.88208 0.94855 0.91422 0.99038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 8.19 71.98 0.59 -4.19 16 2 C 0.02 0.69 0.75 -52.93 -0.04 0.65 16 3 C -0.13 -3.66 7.95 71.98 0.57 -3.09 16 4 C -0.15 -4.60 8.24 71.98 0.59 -4.00 16 5 C 0.13 5.18 5.64 43.52 0.25 5.43 16 6 N -0.32 -12.34 11.93 -46.67 -0.56 -12.90 16 7 N -0.47 -17.13 7.29 -56.32 -0.41 -17.54 16 8 H 0.44 13.64 8.96 -213.42 -1.91 11.73 16 9 C 0.14 5.55 9.27 84.28 0.78 6.33 16 10 C -0.29 -12.22 5.91 -20.15 -0.12 -12.34 16 11 C 0.58 23.97 5.32 86.67 0.46 24.43 16 12 O -0.57 -23.32 8.57 -4.03 -0.03 -23.36 16 13 N -0.70 -27.26 2.79 -445.76 -1.24 -28.50 16 14 C 0.16 5.17 2.79 45.00 0.13 5.30 16 15 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 16 C -0.12 -3.75 5.11 30.93 0.16 -3.59 16 17 C -0.12 -4.24 4.33 -9.05 -0.04 -4.28 16 18 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 19 C -0.11 -3.48 6.18 32.17 0.20 -3.28 16 20 C 0.14 4.73 4.30 45.79 0.20 4.92 16 21 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 22 C -0.13 -3.73 5.40 30.89 0.17 -3.56 16 23 N -0.60 -25.46 1.76 -664.44 -1.17 -26.63 16 24 C -0.25 -11.32 8.41 84.03 0.71 -10.61 16 25 H 0.09 3.72 7.83 -2.91 -0.02 3.70 16 26 C -0.04 -1.72 3.23 84.86 0.27 -1.44 16 27 N -0.90 -45.75 9.25 21.65 0.20 -45.55 16 28 Si 0.92 37.42 27.78 68.60 1.91 39.32 16 29 H -0.26 -9.48 7.03 99.48 0.70 -8.78 16 30 H -0.31 -13.42 7.11 99.48 0.71 -12.72 16 31 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 32 C 0.15 6.91 3.93 86.85 0.34 7.26 16 33 H 0.03 1.17 8.12 -2.38 -0.02 1.15 16 34 H 0.07 2.16 8.12 -2.38 -0.02 2.14 16 35 H 0.07 2.75 4.69 -2.39 -0.01 2.73 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 3.14 4.60 -2.39 -0.01 3.13 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.18 7.44 3.85 -2.91 -0.01 7.43 16 43 H 0.43 17.70 3.14 -92.71 -0.29 17.41 16 44 H 0.08 2.23 7.97 -2.39 -0.02 2.21 16 45 H 0.06 2.12 6.32 -2.39 -0.02 2.10 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.10 2.26 7.75 -2.39 -0.02 2.24 16 48 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.10 2.18 8.00 -2.39 -0.02 2.16 16 50 H 0.24 12.61 8.31 -92.71 -0.77 11.84 16 51 H 0.07 3.23 3.44 -15.19 -0.05 3.18 16 52 H -0.01 -0.47 7.06 -2.39 -0.02 -0.48 16 Total: -1.00 -55.28 365.16 2.61 -52.67 By element: Atomic # 1 Polarization: 59.83 SS G_CDS: -1.29 Total: 58.54 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.21 Total: 3.93 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -3.18 Total: -131.11 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.03 Total: -23.36 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 1.91 Total: 39.32 kcal Total: -55.28 2.61 -52.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047178772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.605 kcal (2) G-P(sol) polarization free energy of solvation -55.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds