Wall clock time and date at job start Wed Apr 1 2020 04:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47612 * 2 1 4 4 C 1.50702 * 109.46933 * 120.00014 * 2 1 3 5 5 N 1.30452 * 125.98963 * 300.14349 * 4 2 1 6 6 N 1.39934 * 108.89636 * 180.25733 * 5 4 2 7 7 H 0.97004 * 125.74918 * 179.73031 * 6 5 4 8 8 C 1.34256 * 108.49304 * 359.75511 * 6 5 4 9 9 C 1.38041 * 107.42072 * 359.97438 * 8 6 5 10 10 C 1.47423 * 126.42160 * 179.97438 * 9 8 6 11 11 O 1.21599 * 120.00864 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99649 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99962 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47025 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.40175 * 59.85821 * 14 13 12 16 16 C 1.53144 * 109.43554 * 179.74611 * 14 13 12 17 17 C 1.53709 * 108.87579 * 66.17263 * 16 14 13 18 18 H 1.08997 * 112.10150 * 187.61844 * 17 16 14 19 19 C 1.54609 * 107.83171 * 312.23399 * 17 16 14 20 20 C 1.54312 * 104.75352 * 88.66966 * 19 17 16 21 21 C 1.54616 * 104.74910 * 359.97438 * 20 19 17 22 22 H 1.08996 * 112.19043 * 146.80345 * 21 20 19 23 23 C 1.53706 * 108.37102 * 271.10976 * 21 20 19 24 24 N 1.48293 * 107.27065 * 64.01253 * 17 16 14 25 25 C 1.36939 * 128.21104 * 107.44058 * 24 17 16 26 26 H 1.07999 * 119.99822 * 145.07383 * 25 24 17 27 27 C 1.38808 * 119.99732 * 325.07764 * 25 24 17 28 28 N 1.31623 * 120.00033 * 4.99321 * 27 25 24 29 29 Si 1.86800 * 119.99855 * 184.99925 * 27 25 24 30 30 H 1.48497 * 109.47494 * 359.97438 * 29 27 25 31 31 H 1.48500 * 109.47221 * 120.00019 * 29 27 25 32 32 H 1.48506 * 109.47117 * 239.99473 * 29 27 25 33 33 H 1.09000 * 109.46809 * 300.00565 * 1 2 3 34 34 H 1.09000 * 109.46827 * 59.99831 * 1 2 3 35 35 H 1.09004 * 109.46984 * 180.02562 * 1 2 3 36 36 H 1.09000 * 109.46809 * 239.99435 * 2 1 3 37 37 H 1.09000 * 109.47162 * 299.99964 * 3 2 1 38 38 H 1.09003 * 109.47001 * 59.99810 * 3 2 1 39 39 H 1.08994 * 109.47452 * 180.02562 * 3 2 1 40 40 H 1.08003 * 126.29330 * 180.02562 * 8 6 5 41 41 H 0.97000 * 120.00037 * 0.02562 * 12 10 9 42 42 H 1.08996 * 109.46996 * 60.00343 * 13 12 10 43 43 H 1.08994 * 109.47340 * 300.00010 * 13 12 10 44 44 H 1.09004 * 109.56927 * 306.35775 * 16 14 13 45 45 H 1.08998 * 109.57012 * 185.99214 * 16 14 13 46 46 H 1.09002 * 110.37959 * 207.48451 * 19 17 16 47 47 H 1.08999 * 110.38677 * 329.85204 * 19 17 16 48 48 H 1.08996 * 110.38382 * 241.18038 * 20 19 17 49 49 H 1.08996 * 110.38724 * 118.81352 * 20 19 17 50 50 H 1.09001 * 109.56698 * 167.83928 * 23 21 20 51 51 H 1.08993 * 109.57378 * 288.08905 * 23 21 20 52 52 H 0.97004 * 119.99758 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7881 -0.3696 2.4658 6 7 2.4335 -1.2703 3.3204 7 1 2.4178 -1.2421 4.2899 8 6 3.0784 -2.1797 2.5724 9 6 2.8476 -1.8644 1.2484 10 6 3.3611 -2.5913 0.0731 11 8 3.0838 -2.2089 -1.0474 12 7 4.1380 -3.6798 0.2407 13 6 4.6479 -4.4025 -0.9272 14 6 5.4952 -5.5889 -0.4628 15 1 4.8821 -6.2570 0.1421 16 6 6.0226 -6.3475 -1.6842 17 6 7.0048 -5.4429 -2.4455 18 1 7.3113 -5.8790 -3.3962 19 6 6.3403 -4.0568 -2.6117 20 6 6.7401 -3.2747 -1.3429 21 6 7.6081 -4.2620 -0.5290 22 1 8.3930 -3.7545 0.0315 23 6 6.6825 -5.0814 0.3845 24 7 8.1573 -5.1902 -1.5472 25 6 9.4275 -5.6940 -1.6367 26 1 10.2712 -5.0867 -1.3440 27 6 9.6305 -6.9853 -2.1038 28 7 8.6137 -7.6902 -2.5528 29 14 11.3468 -7.7226 -2.0950 30 1 12.3080 -6.7330 -1.5455 31 1 11.3565 -8.9442 -1.2508 32 1 11.7406 -8.0767 -3.4825 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5139 -0.8899 37 1 1.6769 1.9563 -0.8900 38 1 1.6768 1.9563 0.8900 39 1 3.1301 1.4424 -0.0005 40 1 3.6687 -3.0065 2.9390 41 1 4.3589 -3.9851 1.1345 42 1 5.2603 -3.7323 -1.5304 43 1 3.8111 -4.7656 -1.5237 44 1 5.1905 -6.6132 -2.3363 45 1 6.5366 -7.2518 -1.3584 46 1 6.7223 -3.5570 -3.5018 47 1 5.2566 -4.1596 -2.6685 48 1 5.8532 -2.9928 -0.7755 49 1 7.3188 -2.3901 -1.6087 50 1 7.2348 -5.9221 0.8043 51 1 6.3119 -4.4487 1.1909 52 1 8.7555 -8.5927 -2.8789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048541024.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:47 Heat of formation + Delta-G solvation = 121.172795 kcal Electronic energy + Delta-G solvation = -32197.584198 eV Core-core repulsion = 28201.710526 eV Total energy + Delta-G solvation = -3995.873671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.70642 -42.22626 -39.64298 -36.62102 -35.94202 -34.47790 -32.92536 -32.29051 -31.79254 -31.56888 -30.89998 -28.10326 -27.97998 -25.47759 -24.76537 -24.28348 -23.71418 -22.11300 -21.38860 -20.75689 -20.37259 -20.04804 -19.35416 -18.64236 -17.52610 -17.22648 -16.73274 -16.28992 -16.07428 -15.65262 -15.61977 -15.42982 -15.02242 -14.72885 -14.46630 -14.37092 -14.09387 -14.00930 -13.89091 -13.64115 -13.25431 -13.08909 -13.04517 -13.00309 -12.79798 -12.65906 -12.41901 -12.33761 -12.21801 -12.11271 -11.96847 -11.90705 -11.73972 -11.51544 -11.21586 -10.94250 -10.84052 -10.66118 -10.56314 -10.47327 -10.39025 -9.83790 -9.30354 -8.41796 -7.87322 -5.31354 0.62251 1.17379 1.46141 1.48717 1.57614 1.86559 2.45918 2.51352 2.57692 3.32025 3.50298 3.68615 3.76024 4.01519 4.03711 4.11277 4.15609 4.22435 4.31513 4.32532 4.35725 4.45924 4.47744 4.55662 4.64127 4.68270 4.70174 4.79814 4.83236 4.88874 4.99188 4.99353 5.00877 5.09925 5.12142 5.16677 5.17949 5.26979 5.34956 5.38007 5.39009 5.46731 5.55731 5.59680 5.62778 5.69391 5.72559 5.80710 6.01648 6.33156 6.40407 6.57010 6.83196 7.15226 7.48515 7.76784 8.69467 9.25897 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002578 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.142766 B =10856.954627 C =11155.668416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.038 4.038 3 C -0.133 4.133 4 C 0.130 3.870 5 N -0.318 5.318 6 N -0.448 5.448 7 H 0.460 0.540 8 C 0.132 3.868 9 C -0.318 4.318 10 C 0.587 3.413 11 O -0.581 6.581 12 N -0.708 5.708 13 C 0.018 3.982 14 C -0.074 4.074 15 H 0.068 0.932 16 C -0.104 4.104 17 C 0.180 3.820 18 H 0.043 0.957 19 C -0.163 4.163 20 C -0.148 4.148 21 C 0.141 3.859 22 H 0.061 0.939 23 C -0.111 4.111 24 N -0.604 5.604 25 C -0.247 4.247 26 H 0.060 0.940 27 C -0.036 4.036 28 N -0.918 5.918 29 Si 0.961 3.039 30 H -0.270 1.270 31 H -0.290 1.290 32 H -0.295 1.295 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.229 0.771 41 H 0.405 0.595 42 H 0.181 0.819 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.050 0.950 50 H 0.039 0.961 51 H 0.083 0.917 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 12.223 12.984 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.058 4.058 3 C -0.191 4.191 4 C -0.038 4.038 5 N -0.140 5.140 6 N -0.154 5.154 7 H 0.308 0.692 8 C -0.023 4.023 9 C -0.333 4.333 10 C 0.376 3.624 11 O -0.462 6.462 12 N -0.360 5.360 13 C -0.102 4.102 14 C -0.093 4.093 15 H 0.087 0.913 16 C -0.144 4.144 17 C 0.073 3.927 18 H 0.061 0.939 19 C -0.201 4.201 20 C -0.186 4.186 21 C 0.035 3.965 22 H 0.079 0.921 23 C -0.150 4.150 24 N -0.327 5.327 25 C -0.377 4.377 26 H 0.078 0.922 27 C -0.233 4.233 28 N -0.562 5.562 29 Si 0.790 3.210 30 H -0.195 1.195 31 H -0.217 1.217 32 H -0.222 1.222 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.246 0.754 41 H 0.242 0.758 42 H 0.197 0.803 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.123 0.877 48 H 0.135 0.865 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.101 0.899 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.234 13.098 12.914 23.883 hybrid contribution 1.629 -1.944 0.051 2.537 sum -13.605 11.154 12.965 21.854 Atomic orbital electron populations 1.21721 0.93067 1.01528 1.02694 1.19981 0.96720 0.96160 0.92985 1.21724 1.00535 0.94148 1.02681 1.22534 0.94207 0.93304 0.93779 1.77061 1.21030 1.15440 1.00479 1.46157 1.37990 1.20869 1.10344 0.69162 1.23716 0.94098 0.94531 0.89906 1.20342 1.15005 1.04415 0.93571 1.17496 0.77424 0.79750 0.87727 1.90679 1.60571 1.68363 1.26625 1.45948 1.51072 1.28359 1.10584 1.24766 0.98255 0.97600 0.89531 1.21338 0.95484 0.95620 0.96884 0.91349 1.21875 0.97208 0.99057 0.96223 1.21189 0.86872 0.91435 0.93162 0.93913 1.23464 1.01359 0.97873 0.97418 1.23331 1.00853 0.97668 0.96791 1.21780 0.93594 0.90616 0.90528 0.92103 1.22238 0.96027 0.99403 0.97336 1.45166 1.06937 1.54114 1.26434 1.19065 0.83560 0.94371 1.40700 0.92202 1.25937 1.00182 0.96335 1.00817 1.70069 1.30548 1.10264 1.45315 0.85300 0.80780 0.78186 0.76720 1.19477 1.21728 1.22223 0.92251 0.90699 0.93648 0.88467 0.90709 0.92247 0.93611 0.75432 0.75818 0.80318 0.93850 0.93815 0.93048 0.93389 0.87659 0.86508 0.93116 0.94206 0.89864 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.18 71.98 0.66 -1.88 16 2 C -0.04 -0.87 3.26 -11.54 -0.04 -0.90 16 3 C -0.13 -2.60 9.18 71.98 0.66 -1.94 16 4 C 0.13 2.99 5.77 43.52 0.25 3.25 16 5 N -0.32 -6.49 12.63 -46.67 -0.59 -7.08 16 6 N -0.45 -5.47 7.29 -56.32 -0.41 -5.88 16 7 H 0.46 2.03 8.96 -213.42 -1.91 0.12 16 8 C 0.13 1.61 11.52 84.28 0.97 2.58 16 9 C -0.32 -6.83 6.13 -20.15 -0.12 -6.95 16 10 C 0.59 15.46 7.57 86.66 0.66 16.12 16 11 O -0.58 -19.62 14.56 -4.03 -0.06 -19.68 16 12 N -0.71 -16.02 4.38 -466.38 -2.04 -18.07 16 13 C 0.02 0.53 2.68 86.38 0.23 0.76 16 14 C -0.07 -2.35 2.77 -10.26 -0.03 -2.38 16 15 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 16 C -0.10 -4.27 5.18 30.88 0.16 -4.11 16 17 C 0.18 8.19 3.12 45.43 0.14 8.33 16 18 H 0.04 2.29 7.28 -2.39 -0.02 2.28 16 19 C -0.16 -6.08 5.72 31.59 0.18 -5.90 16 20 C -0.15 -5.03 5.72 31.59 0.18 -4.85 16 21 C 0.14 5.39 4.28 45.43 0.19 5.58 16 22 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 23 C -0.11 -3.55 5.39 31.32 0.17 -3.38 16 24 N -0.60 -29.22 2.75 -637.14 -1.75 -30.97 16 25 C -0.25 -13.42 10.29 84.03 0.86 -12.56 16 26 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 27 C -0.04 -1.95 5.48 84.86 0.47 -1.48 16 28 N -0.92 -52.09 10.28 21.65 0.22 -51.87 16 29 Si 0.96 44.32 29.56 68.60 2.03 46.35 16 30 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 31 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 32 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 2.68 5.60 -2.39 -0.01 2.67 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.23 0.56 7.46 -2.91 -0.02 0.54 16 41 H 0.41 6.46 6.26 -92.71 -0.58 5.88 16 42 H 0.18 5.68 1.12 -109.36 -0.12 5.56 16 43 H 0.04 1.34 8.00 -2.39 -0.02 1.33 16 44 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.05 2.52 7.01 -2.39 -0.02 2.50 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.11 3.61 4.84 -2.39 -0.01 3.60 16 48 H 0.12 3.50 3.95 -2.39 -0.01 3.49 16 49 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.08 1.92 6.77 -2.39 -0.02 1.90 16 52 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -71.87 387.12 1.34 -70.53 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -1.65 Total: 26.40 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.60 Total: -9.74 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -4.58 Total: -113.87 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.06 Total: -19.68 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.87 1.34 -70.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048541024.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.703 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds