Wall clock time and date at job start Wed Apr 1 2020 04:45:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52994 * 109.47612 * 2 1
4 4 C 1.50702 * 109.46933 * 120.00014 * 2 1 3
5 5 N 1.30452 * 125.98963 * 300.14349 * 4 2 1
6 6 N 1.39934 * 108.89636 * 180.25733 * 5 4 2
7 7 H 0.97004 * 125.74918 * 179.73031 * 6 5 4
8 8 C 1.34256 * 108.49304 * 359.75511 * 6 5 4
9 9 C 1.38041 * 107.42072 * 359.97438 * 8 6 5
10 10 C 1.47423 * 126.42160 * 179.97438 * 9 8 6
11 11 O 1.21599 * 120.00864 * 180.02562 * 10 9 8
12 12 N 1.34778 * 119.99649 * 0.02562 * 10 9 8
13 13 C 1.46503 * 119.99962 * 179.97438 * 12 10 9
14 14 C 1.53004 * 109.47025 * 180.02562 * 13 12 10
15 15 H 1.09001 * 109.40175 * 59.85821 * 14 13 12
16 16 C 1.53144 * 109.43554 * 179.74611 * 14 13 12
17 17 C 1.53709 * 108.87579 * 66.17263 * 16 14 13
18 18 H 1.08997 * 112.10150 * 187.61844 * 17 16 14
19 19 C 1.54609 * 107.83171 * 312.23399 * 17 16 14
20 20 C 1.54312 * 104.75352 * 88.66966 * 19 17 16
21 21 C 1.54616 * 104.74910 * 359.97438 * 20 19 17
22 22 H 1.08996 * 112.19043 * 146.80345 * 21 20 19
23 23 C 1.53706 * 108.37102 * 271.10976 * 21 20 19
24 24 N 1.48293 * 107.27065 * 64.01253 * 17 16 14
25 25 C 1.36939 * 128.21104 * 107.44058 * 24 17 16
26 26 H 1.07999 * 119.99822 * 145.07383 * 25 24 17
27 27 C 1.38808 * 119.99732 * 325.07764 * 25 24 17
28 28 N 1.31623 * 120.00033 * 4.99321 * 27 25 24
29 29 Si 1.86800 * 119.99855 * 184.99925 * 27 25 24
30 30 H 1.48497 * 109.47494 * 359.97438 * 29 27 25
31 31 H 1.48500 * 109.47221 * 120.00019 * 29 27 25
32 32 H 1.48506 * 109.47117 * 239.99473 * 29 27 25
33 33 H 1.09000 * 109.46809 * 300.00565 * 1 2 3
34 34 H 1.09000 * 109.46827 * 59.99831 * 1 2 3
35 35 H 1.09004 * 109.46984 * 180.02562 * 1 2 3
36 36 H 1.09000 * 109.46809 * 239.99435 * 2 1 3
37 37 H 1.09000 * 109.47162 * 299.99964 * 3 2 1
38 38 H 1.09003 * 109.47001 * 59.99810 * 3 2 1
39 39 H 1.08994 * 109.47452 * 180.02562 * 3 2 1
40 40 H 1.08003 * 126.29330 * 180.02562 * 8 6 5
41 41 H 0.97000 * 120.00037 * 0.02562 * 12 10 9
42 42 H 1.08996 * 109.46996 * 60.00343 * 13 12 10
43 43 H 1.08994 * 109.47340 * 300.00010 * 13 12 10
44 44 H 1.09004 * 109.56927 * 306.35775 * 16 14 13
45 45 H 1.08998 * 109.57012 * 185.99214 * 16 14 13
46 46 H 1.09002 * 110.37959 * 207.48451 * 19 17 16
47 47 H 1.08999 * 110.38677 * 329.85204 * 19 17 16
48 48 H 1.08996 * 110.38382 * 241.18038 * 20 19 17
49 49 H 1.08996 * 110.38724 * 118.81352 * 20 19 17
50 50 H 1.09001 * 109.56698 * 167.83928 * 23 21 20
51 51 H 1.08993 * 109.57378 * 288.08905 * 23 21 20
52 52 H 0.97004 * 119.99758 * 180.02562 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0402 1.4424 0.0000
4 6 2.0323 -0.7104 1.2305
5 7 1.7881 -0.3696 2.4658
6 7 2.4335 -1.2703 3.3204
7 1 2.4178 -1.2421 4.2899
8 6 3.0784 -2.1797 2.5724
9 6 2.8476 -1.8644 1.2484
10 6 3.3611 -2.5913 0.0731
11 8 3.0838 -2.2089 -1.0474
12 7 4.1380 -3.6798 0.2407
13 6 4.6479 -4.4025 -0.9272
14 6 5.4952 -5.5889 -0.4628
15 1 4.8821 -6.2570 0.1421
16 6 6.0226 -6.3475 -1.6842
17 6 7.0048 -5.4429 -2.4455
18 1 7.3113 -5.8790 -3.3962
19 6 6.3403 -4.0568 -2.6117
20 6 6.7401 -3.2747 -1.3429
21 6 7.6081 -4.2620 -0.5290
22 1 8.3930 -3.7545 0.0315
23 6 6.6825 -5.0814 0.3845
24 7 8.1573 -5.1902 -1.5472
25 6 9.4275 -5.6940 -1.6367
26 1 10.2712 -5.0867 -1.3440
27 6 9.6305 -6.9853 -2.1038
28 7 8.6137 -7.6902 -2.5528
29 14 11.3468 -7.7226 -2.0950
30 1 12.3080 -6.7330 -1.5455
31 1 11.3565 -8.9442 -1.2508
32 1 11.7406 -8.0767 -3.4825
33 1 -0.3633 0.5139 0.8899
34 1 -0.3633 0.5139 -0.8900
35 1 -0.3633 -1.0277 0.0005
36 1 1.8933 -0.5139 -0.8899
37 1 1.6769 1.9563 -0.8900
38 1 1.6768 1.9563 0.8900
39 1 3.1301 1.4424 -0.0005
40 1 3.6687 -3.0065 2.9390
41 1 4.3589 -3.9851 1.1345
42 1 5.2603 -3.7323 -1.5304
43 1 3.8111 -4.7656 -1.5237
44 1 5.1905 -6.6132 -2.3363
45 1 6.5366 -7.2518 -1.3584
46 1 6.7223 -3.5570 -3.5018
47 1 5.2566 -4.1596 -2.6685
48 1 5.8532 -2.9928 -0.7755
49 1 7.3188 -2.3901 -1.6087
50 1 7.2348 -5.9221 0.8043
51 1 6.3119 -4.4487 1.1909
52 1 8.7555 -8.5927 -2.8789
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001048541024.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:47
Heat of formation + Delta-G solvation = 121.172795 kcal
Electronic energy + Delta-G solvation = -32197.584198 eV
Core-core repulsion = 28201.710526 eV
Total energy + Delta-G solvation = -3995.873671 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.53 seconds
Orbital eigenvalues (eV)
-42.70642 -42.22626 -39.64298 -36.62102 -35.94202 -34.47790 -32.92536 -32.29051
-31.79254 -31.56888 -30.89998 -28.10326 -27.97998 -25.47759 -24.76537 -24.28348
-23.71418 -22.11300 -21.38860 -20.75689 -20.37259 -20.04804 -19.35416 -18.64236
-17.52610 -17.22648 -16.73274 -16.28992 -16.07428 -15.65262 -15.61977 -15.42982
-15.02242 -14.72885 -14.46630 -14.37092 -14.09387 -14.00930 -13.89091 -13.64115
-13.25431 -13.08909 -13.04517 -13.00309 -12.79798 -12.65906 -12.41901 -12.33761
-12.21801 -12.11271 -11.96847 -11.90705 -11.73972 -11.51544 -11.21586 -10.94250
-10.84052 -10.66118 -10.56314 -10.47327 -10.39025 -9.83790 -9.30354 -8.41796
-7.87322 -5.31354 0.62251 1.17379 1.46141 1.48717 1.57614 1.86559
2.45918 2.51352 2.57692 3.32025 3.50298 3.68615 3.76024 4.01519
4.03711 4.11277 4.15609 4.22435 4.31513 4.32532 4.35725 4.45924
4.47744 4.55662 4.64127 4.68270 4.70174 4.79814 4.83236 4.88874
4.99188 4.99353 5.00877 5.09925 5.12142 5.16677 5.17949 5.26979
5.34956 5.38007 5.39009 5.46731 5.55731 5.59680 5.62778 5.69391
5.72559 5.80710 6.01648 6.33156 6.40407 6.57010 6.83196 7.15226
7.48515 7.76784 8.69467 9.25897
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.023640 B = 0.002578 C = 0.002509
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.142766 B =10856.954627 C =11155.668416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.038 4.038
3 C -0.133 4.133
4 C 0.130 3.870
5 N -0.318 5.318
6 N -0.448 5.448
7 H 0.460 0.540
8 C 0.132 3.868
9 C -0.318 4.318
10 C 0.587 3.413
11 O -0.581 6.581
12 N -0.708 5.708
13 C 0.018 3.982
14 C -0.074 4.074
15 H 0.068 0.932
16 C -0.104 4.104
17 C 0.180 3.820
18 H 0.043 0.957
19 C -0.163 4.163
20 C -0.148 4.148
21 C 0.141 3.859
22 H 0.061 0.939
23 C -0.111 4.111
24 N -0.604 5.604
25 C -0.247 4.247
26 H 0.060 0.940
27 C -0.036 4.036
28 N -0.918 5.918
29 Si 0.961 3.039
30 H -0.270 1.270
31 H -0.290 1.290
32 H -0.295 1.295
33 H 0.058 0.942
34 H 0.074 0.926
35 H 0.044 0.956
36 H 0.097 0.903
37 H 0.074 0.926
38 H 0.058 0.942
39 H 0.045 0.955
40 H 0.229 0.771
41 H 0.405 0.595
42 H 0.181 0.819
43 H 0.043 0.957
44 H 0.043 0.957
45 H 0.051 0.949
46 H 0.047 0.953
47 H 0.106 0.894
48 H 0.118 0.882
49 H 0.050 0.950
50 H 0.039 0.961
51 H 0.083 0.917
52 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.600 12.223 12.984 23.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.058 4.058
3 C -0.191 4.191
4 C -0.038 4.038
5 N -0.140 5.140
6 N -0.154 5.154
7 H 0.308 0.692
8 C -0.023 4.023
9 C -0.333 4.333
10 C 0.376 3.624
11 O -0.462 6.462
12 N -0.360 5.360
13 C -0.102 4.102
14 C -0.093 4.093
15 H 0.087 0.913
16 C -0.144 4.144
17 C 0.073 3.927
18 H 0.061 0.939
19 C -0.201 4.201
20 C -0.186 4.186
21 C 0.035 3.965
22 H 0.079 0.921
23 C -0.150 4.150
24 N -0.327 5.327
25 C -0.377 4.377
26 H 0.078 0.922
27 C -0.233 4.233
28 N -0.562 5.562
29 Si 0.790 3.210
30 H -0.195 1.195
31 H -0.217 1.217
32 H -0.222 1.222
33 H 0.077 0.923
34 H 0.093 0.907
35 H 0.064 0.936
36 H 0.115 0.885
37 H 0.093 0.907
38 H 0.078 0.922
39 H 0.064 0.936
40 H 0.246 0.754
41 H 0.242 0.758
42 H 0.197 0.803
43 H 0.061 0.939
44 H 0.062 0.938
45 H 0.070 0.930
46 H 0.066 0.934
47 H 0.123 0.877
48 H 0.135 0.865
49 H 0.069 0.931
50 H 0.058 0.942
51 H 0.101 0.899
52 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -15.234 13.098 12.914 23.883
hybrid contribution 1.629 -1.944 0.051 2.537
sum -13.605 11.154 12.965 21.854
Atomic orbital electron populations
1.21721 0.93067 1.01528 1.02694 1.19981 0.96720 0.96160 0.92985
1.21724 1.00535 0.94148 1.02681 1.22534 0.94207 0.93304 0.93779
1.77061 1.21030 1.15440 1.00479 1.46157 1.37990 1.20869 1.10344
0.69162 1.23716 0.94098 0.94531 0.89906 1.20342 1.15005 1.04415
0.93571 1.17496 0.77424 0.79750 0.87727 1.90679 1.60571 1.68363
1.26625 1.45948 1.51072 1.28359 1.10584 1.24766 0.98255 0.97600
0.89531 1.21338 0.95484 0.95620 0.96884 0.91349 1.21875 0.97208
0.99057 0.96223 1.21189 0.86872 0.91435 0.93162 0.93913 1.23464
1.01359 0.97873 0.97418 1.23331 1.00853 0.97668 0.96791 1.21780
0.93594 0.90616 0.90528 0.92103 1.22238 0.96027 0.99403 0.97336
1.45166 1.06937 1.54114 1.26434 1.19065 0.83560 0.94371 1.40700
0.92202 1.25937 1.00182 0.96335 1.00817 1.70069 1.30548 1.10264
1.45315 0.85300 0.80780 0.78186 0.76720 1.19477 1.21728 1.22223
0.92251 0.90699 0.93648 0.88467 0.90709 0.92247 0.93611 0.75432
0.75818 0.80318 0.93850 0.93815 0.93048 0.93389 0.87659 0.86508
0.93116 0.94206 0.89864 0.94291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.54 9.18 71.98 0.66 -1.88 16
2 C -0.04 -0.87 3.26 -11.54 -0.04 -0.90 16
3 C -0.13 -2.60 9.18 71.98 0.66 -1.94 16
4 C 0.13 2.99 5.77 43.52 0.25 3.25 16
5 N -0.32 -6.49 12.63 -46.67 -0.59 -7.08 16
6 N -0.45 -5.47 7.29 -56.32 -0.41 -5.88 16
7 H 0.46 2.03 8.96 -213.42 -1.91 0.12 16
8 C 0.13 1.61 11.52 84.28 0.97 2.58 16
9 C -0.32 -6.83 6.13 -20.15 -0.12 -6.95 16
10 C 0.59 15.46 7.57 86.66 0.66 16.12 16
11 O -0.58 -19.62 14.56 -4.03 -0.06 -19.68 16
12 N -0.71 -16.02 4.38 -466.38 -2.04 -18.07 16
13 C 0.02 0.53 2.68 86.38 0.23 0.76 16
14 C -0.07 -2.35 2.77 -10.26 -0.03 -2.38 16
15 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
16 C -0.10 -4.27 5.18 30.88 0.16 -4.11 16
17 C 0.18 8.19 3.12 45.43 0.14 8.33 16
18 H 0.04 2.29 7.28 -2.39 -0.02 2.28 16
19 C -0.16 -6.08 5.72 31.59 0.18 -5.90 16
20 C -0.15 -5.03 5.72 31.59 0.18 -4.85 16
21 C 0.14 5.39 4.28 45.43 0.19 5.58 16
22 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16
23 C -0.11 -3.55 5.39 31.32 0.17 -3.38 16
24 N -0.60 -29.22 2.75 -637.14 -1.75 -30.97 16
25 C -0.25 -13.42 10.29 84.03 0.86 -12.56 16
26 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16
27 C -0.04 -1.95 5.48 84.86 0.47 -1.48 16
28 N -0.92 -52.09 10.28 21.65 0.22 -51.87 16
29 Si 0.96 44.32 29.56 68.60 2.03 46.35 16
30 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
31 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16
32 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16
33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
36 H 0.10 2.68 5.60 -2.39 -0.01 2.67 16
37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16
40 H 0.23 0.56 7.46 -2.91 -0.02 0.54 16
41 H 0.41 6.46 6.26 -92.71 -0.58 5.88 16
42 H 0.18 5.68 1.12 -109.36 -0.12 5.56 16
43 H 0.04 1.34 8.00 -2.39 -0.02 1.33 16
44 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16
45 H 0.05 2.52 7.01 -2.39 -0.02 2.50 16
46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
47 H 0.11 3.61 4.84 -2.39 -0.01 3.60 16
48 H 0.12 3.50 3.95 -2.39 -0.01 3.49 16
49 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
50 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
51 H 0.08 1.92 6.77 -2.39 -0.02 1.90 16
52 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16
Total: -1.00 -71.87 387.12 1.34 -70.53
By element:
Atomic # 1 Polarization: 28.05 SS G_CDS: -1.65 Total: 26.40 kcal
Atomic # 6 Polarization: -15.34 SS G_CDS: 5.60 Total: -9.74 kcal
Atomic # 7 Polarization: -109.29 SS G_CDS: -4.58 Total: -113.87 kcal
Atomic # 8 Polarization: -19.62 SS G_CDS: -0.06 Total: -19.68 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal
Total: -71.87 1.34 -70.53 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001048541024.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 191.703 kcal
(2) G-P(sol) polarization free energy of solvation -71.873 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.830 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal
(6) G-S(sol) free energy of system = (1) + (5) 121.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.53 seconds