Wall clock time and date at job start Wed Apr 1 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28447 * 125.19255 * 2 1 4 4 C 1.30862 * 110.93031 * 180.28207 * 3 2 1 5 5 C 1.50701 * 126.07249 * 179.75221 * 4 3 2 6 6 C 1.52992 * 109.47005 * 254.95828 * 5 4 3 7 7 C 1.52995 * 109.46908 * 14.95787 * 5 4 3 8 8 C 1.53001 * 109.47050 * 134.95492 * 5 4 3 9 9 C 1.39674 * 107.86027 * 359.71554 * 4 3 2 10 10 C 1.36598 * 125.18980 * 179.79426 * 2 1 3 11 11 C 1.47161 * 126.88712 * 359.97438 * 10 2 1 12 12 O 1.21630 * 119.99391 * 354.17351 * 11 10 2 13 13 N 1.34777 * 120.00327 * 174.17639 * 11 10 2 14 14 C 1.46654 * 125.33372 * 174.68712 * 13 11 10 15 15 C 1.53676 * 107.97151 * 179.29073 * 14 13 11 16 16 H 1.09002 * 113.31851 * 106.32838 * 15 14 13 17 17 C 1.53984 * 109.29828 * 233.06176 * 15 14 13 18 18 N 1.46755 * 106.67528 * 82.34038 * 17 15 14 19 19 C 1.36941 * 125.33564 * 198.42956 * 18 17 15 20 20 H 1.07997 * 119.99815 * 166.69958 * 19 18 17 21 21 C 1.38809 * 119.99527 * 346.69539 * 19 18 17 22 22 N 1.31619 * 120.00353 * 1.55858 * 21 19 18 23 23 Si 1.86802 * 119.99749 * 181.55358 * 21 19 18 24 24 H 1.48496 * 109.47215 * 94.98627 * 23 21 19 25 25 H 1.48502 * 109.47246 * 214.98629 * 23 21 19 26 26 H 1.48504 * 109.47299 * 334.98582 * 23 21 19 27 27 C 1.46659 * 109.33293 * 18.45327 * 18 17 15 28 28 C 1.53679 * 107.96941 * 359.28780 * 27 18 17 29 29 H 1.08991 * 112.77273 * 106.02018 * 28 27 18 30 30 C 1.46749 * 125.33398 * 354.68672 * 13 11 10 31 31 H 1.09000 * 109.47004 * 270.06848 * 1 2 3 32 32 H 1.08999 * 109.47209 * 30.06668 * 1 2 3 33 33 H 1.08998 * 109.47159 * 150.06857 * 1 2 3 34 34 H 1.08996 * 109.47290 * 59.99647 * 6 5 4 35 35 H 1.09001 * 109.47155 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47193 * 299.99729 * 6 5 4 37 37 H 1.09005 * 109.47616 * 59.99918 * 7 5 4 38 38 H 1.09001 * 109.47021 * 180.02562 * 7 5 4 39 39 H 1.09003 * 109.47170 * 300.00272 * 7 5 4 40 40 H 1.09004 * 109.47069 * 60.00319 * 8 5 4 41 41 H 1.09001 * 109.46787 * 179.97438 * 8 5 4 42 42 H 1.08993 * 109.47361 * 300.00093 * 8 5 4 43 43 H 1.07999 * 127.32396 * 180.02562 * 9 4 3 44 44 H 1.09005 * 109.76747 * 59.66049 * 14 13 11 45 45 H 1.08997 * 109.76952 * 298.92451 * 14 13 11 46 46 H 1.09005 * 110.01436 * 323.03839 * 17 15 14 47 47 H 1.08993 * 110.01536 * 201.64501 * 17 15 14 48 48 H 0.97003 * 119.99812 * 179.97438 * 22 21 19 49 49 H 1.09009 * 109.76823 * 239.66106 * 27 18 17 50 50 H 1.09000 * 109.77146 * 118.92051 * 27 18 17 51 51 H 1.09008 * 110.01915 * 79.14363 * 30 13 11 52 52 H 1.09005 * 110.02371 * 317.75593 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 -0.0060 5 6 4.6335 1.6892 -0.0132 6 6 5.2579 1.7247 -1.4095 7 6 4.1384 3.0880 0.3597 8 6 5.6819 1.2316 1.0029 9 6 3.5612 -0.6667 -0.0037 10 6 2.2521 -1.1163 0.0040 11 6 1.7993 -2.5165 0.0096 12 8 0.6151 -2.7721 0.1179 13 7 2.6966 -3.5155 -0.1053 14 6 2.3907 -4.9462 -0.0036 15 6 3.6979 -5.7266 -0.2132 16 1 4.0955 -6.1571 0.7059 17 6 3.4928 -6.7742 -1.3229 18 7 3.6624 -6.0728 -2.6008 19 6 3.2245 -6.5252 -3.8169 20 1 3.1993 -5.8565 -4.6646 21 6 2.8131 -7.8432 -3.9598 22 7 2.8148 -8.6497 -2.9197 23 14 2.2568 -8.4721 -5.6285 24 1 3.3987 -9.1255 -6.3171 25 1 1.1599 -9.4565 -5.4460 26 1 1.7693 -7.3344 -6.4490 27 6 4.3749 -4.8116 -2.3715 28 6 4.6595 -4.6948 -0.8658 29 1 5.7061 -4.8727 -0.6192 30 6 4.1328 -3.3421 -0.3519 31 1 -0.3633 0.0012 1.0277 32 1 -0.3633 0.8894 -0.5149 33 1 -0.3633 -0.8906 -0.5128 34 1 4.5111 2.0507 -2.1333 35 1 6.0967 2.4208 -1.4148 36 1 5.6107 0.7281 -1.6752 37 1 3.6935 3.0628 1.3545 38 1 4.9774 3.7839 0.3541 39 1 3.3915 3.4140 -0.3641 40 1 6.0346 0.2350 0.7372 41 1 6.5211 1.9271 0.9973 42 1 5.2370 1.2063 1.9976 43 1 4.4594 -1.2663 -0.0069 44 1 1.6683 -5.2242 -0.7710 45 1 1.9837 -5.1669 0.9831 46 1 2.4891 -7.1945 -1.2583 47 1 4.2360 -7.5661 -1.2305 48 1 2.5270 -9.5706 -3.0196 49 1 3.7564 -3.9745 -2.6958 50 1 5.3138 -4.8126 -2.9252 51 1 4.6404 -3.0716 0.5741 52 1 4.2917 -2.5696 -1.1043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049025459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:25 Heat of formation + Delta-G solvation = 53.417791 kcal Electronic energy + Delta-G solvation = -31925.435182 eV Core-core repulsion = 27926.623433 eV Total energy + Delta-G solvation = -3998.811749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.67653 -41.47251 -39.56054 -37.88267 -36.70627 -34.31615 -33.54126 -32.59686 -31.38077 -31.18370 -28.29842 -28.00755 -27.76980 -27.41269 -27.06596 -25.22626 -23.29178 -22.92995 -21.75197 -21.28695 -20.86226 -19.31352 -18.83111 -18.04974 -17.67310 -17.50825 -17.02760 -16.76705 -16.32683 -15.74936 -15.63528 -15.56614 -15.03891 -14.87959 -14.66678 -14.54110 -14.34714 -14.19528 -13.74112 -13.69986 -13.56109 -13.49231 -13.18315 -13.02425 -12.93471 -12.91216 -12.75879 -12.74857 -12.44449 -12.23864 -12.01535 -11.95766 -11.90859 -11.79621 -11.69369 -11.56189 -11.47339 -11.27982 -11.21673 -10.69474 -10.23076 -9.89083 -9.68163 -8.80844 -7.89708 -5.25037 0.16894 1.27174 1.43480 1.44285 1.53171 1.55341 2.00209 2.07349 2.47057 3.21344 3.27243 3.39085 3.43932 3.65716 3.77430 3.86616 3.94963 4.08866 4.17891 4.20155 4.23617 4.26007 4.30849 4.37446 4.50108 4.53288 4.56703 4.59792 4.68712 4.78309 4.84182 4.89804 4.90902 4.92892 5.01154 5.04636 5.11367 5.13482 5.14642 5.20597 5.22486 5.31517 5.37540 5.46757 5.49887 5.54201 5.57104 5.58691 5.76142 5.77075 6.23125 6.33077 6.85283 7.07249 7.10985 7.79104 8.41671 9.21091 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.002847 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.144610 B = 9833.670589 C =10229.349886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.270 5.270 3 N -0.286 5.286 4 C 0.032 3.968 5 C 0.017 3.983 6 C -0.136 4.136 7 C -0.131 4.131 8 C -0.136 4.136 9 C -0.178 4.178 10 C -0.050 4.050 11 C 0.595 3.405 12 O -0.582 6.582 13 N -0.591 5.591 14 C 0.131 3.869 15 C -0.109 4.109 16 H 0.129 0.871 17 C 0.192 3.808 18 N -0.622 5.622 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.058 4.058 22 N -0.943 5.943 23 Si 0.972 3.028 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.137 3.863 28 C -0.093 4.093 29 H 0.140 0.860 30 C 0.103 3.897 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.193 0.807 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.008 0.992 48 H 0.248 0.752 49 H 0.011 0.989 50 H 0.030 0.970 51 H 0.113 0.887 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.600 21.564 10.775 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.058 5.058 3 N -0.119 5.119 4 C -0.125 4.125 5 C 0.015 3.985 6 C -0.194 4.194 7 C -0.188 4.188 8 C -0.194 4.194 9 C -0.207 4.207 10 C -0.178 4.178 11 C 0.384 3.616 12 O -0.463 6.463 13 N -0.322 5.322 14 C 0.009 3.991 15 C -0.129 4.129 16 H 0.146 0.854 17 C 0.066 3.934 18 N -0.348 5.348 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.252 4.252 22 N -0.592 5.592 23 Si 0.801 3.199 24 H -0.209 1.209 25 H -0.221 1.221 26 H -0.199 1.199 27 C 0.012 3.988 28 C -0.112 4.112 29 H 0.158 0.842 30 C -0.018 4.018 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.210 0.790 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.029 0.971 50 H 0.048 0.952 51 H 0.131 0.869 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.917 22.211 10.743 25.372 hybrid contribution -0.733 -1.741 -1.213 2.245 sum 5.184 20.470 9.530 23.167 Atomic orbital electron populations 1.22369 0.71841 1.05767 1.05321 1.45745 1.08413 1.01524 1.50094 1.73093 1.04597 1.13330 1.20845 1.22425 0.91809 0.93875 1.04386 1.19062 0.89593 0.92220 0.97641 1.21872 1.00609 1.03033 0.93914 1.21734 1.01265 0.94939 1.00907 1.21881 0.97577 1.02630 0.97326 1.22838 0.95888 0.95153 1.06819 1.21210 0.92509 0.88636 1.15460 1.16800 0.84431 0.83428 0.76908 1.90754 1.17291 1.84903 1.53381 1.47872 1.09732 1.05668 1.68893 1.21686 0.97982 0.78854 1.00616 1.23103 0.93684 0.96169 0.99911 0.85352 1.20871 0.98242 0.91363 0.82905 1.44445 1.65817 1.20831 1.03689 1.19298 1.36511 0.93812 0.87791 0.91079 1.25633 1.02492 0.96256 1.00795 1.70124 1.53927 1.05624 1.29488 0.85159 0.77309 0.77834 0.79626 1.20911 1.22066 1.19884 1.21370 0.94377 0.87884 0.95168 1.22929 1.01254 0.93494 0.93486 0.84195 1.22653 0.78894 0.97774 1.02488 0.88864 0.87011 0.89103 0.94029 0.89898 0.91848 0.93474 0.90436 0.93489 0.91202 0.90070 0.93103 0.79047 0.94871 0.90782 0.95673 0.97386 0.94234 0.97126 0.95183 0.86874 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.95 10.76 127.77 1.37 3.33 16 2 N -0.27 -7.38 3.75 -356.04 -1.33 -8.72 16 3 N -0.29 -7.40 11.23 -47.49 -0.53 -7.93 16 4 C 0.03 0.70 5.65 43.05 0.24 0.94 16 5 C 0.02 0.26 0.96 -52.93 -0.05 0.21 16 6 C -0.14 -1.88 8.46 71.98 0.61 -1.27 16 7 C -0.13 -1.97 8.04 71.98 0.58 -1.39 16 8 C -0.14 -1.54 8.20 71.98 0.59 -0.95 16 9 C -0.18 -3.97 8.59 22.66 0.19 -3.78 16 10 C -0.05 -1.43 6.90 40.79 0.28 -1.15 16 11 C 0.60 19.93 7.80 86.59 0.68 20.61 16 12 O -0.58 -23.11 15.09 -4.13 -0.06 -23.17 16 13 N -0.59 -18.14 3.31 -821.71 -2.72 -20.86 16 14 C 0.13 4.57 6.24 86.58 0.54 5.11 16 15 C -0.11 -3.53 4.09 -9.40 -0.04 -3.57 16 16 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 17 C 0.19 8.96 4.56 86.66 0.40 9.35 16 18 N -0.62 -31.22 3.38 -697.71 -2.35 -33.57 16 19 C -0.24 -13.84 10.22 84.03 0.86 -12.98 16 20 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.06 -3.31 5.48 84.86 0.46 -2.84 16 22 N -0.94 -56.18 10.45 21.65 0.23 -55.96 16 23 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 27 C 0.14 5.26 6.63 86.58 0.57 5.83 16 28 C -0.09 -2.51 4.09 -9.40 -0.04 -2.55 16 29 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 30 C 0.10 2.31 4.24 86.66 0.37 2.68 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.39 6.46 -2.39 -0.02 2.38 16 34 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 40 H 0.07 0.68 7.60 -2.39 -0.02 0.66 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.19 3.11 4.58 -2.91 -0.01 3.09 16 44 H 0.03 1.48 7.47 -2.38 -0.02 1.46 16 45 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.02 1.37 6.72 -2.38 -0.02 1.35 16 47 H 0.01 0.42 7.85 -2.39 -0.02 0.40 16 48 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 49 H 0.01 0.43 7.47 -2.38 -0.02 0.42 16 50 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.11 1.67 7.51 -2.38 -0.02 1.65 16 52 H 0.09 1.94 5.89 -2.38 -0.01 1.92 16 Total: -1.00 -75.63 400.57 3.78 -71.85 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.91 Total: 12.48 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 7.62 Total: 17.58 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -6.71 Total: -127.04 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -75.63 3.78 -71.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049025459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.272 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds