Wall clock time and date at job start Wed Apr 1 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30500 * 125.64958 * 60.01936 * 4 2 1 6 6 C 1.34125 * 109.25487 * 180.02562 * 5 4 2 7 7 C 1.34672 * 108.02330 * 0.02562 * 6 5 4 8 8 N 1.35038 * 125.64660 * 239.72132 * 4 2 1 9 9 C 1.46504 * 126.40062 * 359.97438 * 8 4 2 10 10 C 1.52994 * 109.47052 * 85.00342 * 9 8 4 11 11 C 1.50695 * 109.47600 * 179.97438 * 10 9 8 12 12 O 1.21288 * 119.99376 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00511 * 180.02562 * 11 10 9 14 14 C 1.46747 * 125.32906 * 359.69521 * 13 11 10 15 15 C 1.54113 * 106.62942 * 161.56441 * 14 13 11 16 16 H 1.08994 * 113.48713 * 151.37947 * 15 14 13 17 17 C 1.53970 * 109.45734 * 278.65775 * 15 14 13 18 18 N 1.46779 * 106.62438 * 138.17428 * 17 15 14 19 19 C 1.36933 * 125.33557 * 161.48350 * 18 17 15 20 20 H 1.08004 * 120.00048 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31616 * 119.99697 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47051 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47427 * 119.99957 * 23 21 19 26 26 H 1.48504 * 109.46956 * 239.99626 * 23 21 19 27 27 C 1.46663 * 109.32317 * 341.48412 * 18 17 15 28 28 C 1.53718 * 107.94607 * 0.54424 * 27 18 17 29 29 H 1.09007 * 113.05968 * 140.00252 * 28 27 18 30 30 C 1.46642 * 125.33026 * 180.02562 * 13 11 10 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 38 38 H 1.08001 * 125.99210 * 180.02562 * 6 5 4 39 39 H 1.07999 * 126.59350 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.47101 * 205.00236 * 9 8 4 41 41 H 1.08998 * 109.47048 * 325.00739 * 9 8 4 42 42 H 1.09000 * 109.47112 * 300.00694 * 10 9 8 43 43 H 1.09006 * 109.47390 * 59.99911 * 10 9 8 44 44 H 1.09002 * 110.00661 * 280.99826 * 14 13 11 45 45 H 1.09005 * 110.00764 * 42.36671 * 14 13 11 46 46 H 1.08994 * 110.02383 * 257.46718 * 17 15 14 47 47 H 1.08996 * 110.02726 * 18.88187 * 17 15 14 48 48 H 0.97007 * 120.00109 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.77402 * 240.92032 * 27 18 17 50 50 H 1.09001 * 109.77466 * 120.16536 * 27 18 17 51 51 H 1.08999 * 109.75771 * 300.45127 * 30 13 11 52 52 H 1.08997 * 109.76552 * 61.16927 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7863 -0.3616 -2.4638 6 6 2.3931 -1.2209 -3.2959 7 6 3.0393 -2.1372 -2.5500 8 7 2.8163 -1.8098 -1.2397 9 6 3.3288 -2.5219 -0.0664 10 6 2.2790 -3.5220 0.4219 11 6 2.8062 -4.2551 1.6284 12 8 3.9126 -4.0020 2.0560 13 7 2.0483 -5.1917 2.2322 14 6 0.6962 -5.5850 1.8192 15 6 0.4199 -6.9574 2.4637 16 1 -0.6361 -7.1385 2.6639 17 6 1.0697 -8.0638 1.6126 18 7 1.6799 -9.0123 2.5520 19 6 2.0417 -10.2992 2.2551 20 1 1.8825 -10.6891 1.2605 21 6 2.6119 -11.1030 3.2326 22 7 2.8054 -10.6280 4.4447 23 14 3.1061 -12.8583 2.8273 24 1 2.7862 -13.1470 1.4062 25 1 4.5646 -13.0261 3.0508 26 1 2.3600 -13.7973 3.7030 27 6 1.8413 -8.3657 3.8584 28 6 1.2930 -6.9338 3.7491 29 1 0.7348 -6.6217 4.6319 30 6 2.4431 -5.9725 3.4090 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 2.3680 -1.1844 -4.3750 39 1 3.6258 -2.9673 -2.9154 40 1 4.2411 -3.0547 -0.3345 41 1 3.5455 -1.8065 0.7269 42 1 1.3666 -2.9893 0.6899 43 1 2.0621 -4.2375 -0.3714 44 1 -0.0294 -4.8518 2.1713 45 1 0.6471 -5.6672 0.7334 46 1 0.3114 -8.5675 1.0133 47 1 1.8346 -7.6357 0.9648 48 1 3.2043 -11.1895 5.1278 49 1 2.8971 -8.3367 4.1276 50 1 1.2829 -8.9176 4.6146 51 1 3.3457 -6.5420 3.1876 52 1 2.6261 -5.3042 4.2504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049097257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:59 Heat of formation + Delta-G solvation = 46.934388 kcal Electronic energy + Delta-G solvation = -30976.268124 eV Core-core repulsion = 26977.175234 eV Total energy + Delta-G solvation = -3999.092890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.36963 -40.38764 -38.47476 -35.63503 -35.17267 -34.96260 -32.38321 -31.07138 -30.03289 -29.69376 -28.94538 -27.43922 -26.08293 -25.60459 -24.43208 -23.08986 -22.68737 -21.38604 -20.28207 -19.51508 -19.35825 -19.21970 -17.78688 -16.99960 -16.61978 -16.17114 -15.86365 -15.53952 -14.99239 -14.86643 -14.74693 -14.51230 -13.96572 -13.75438 -13.67888 -13.49038 -13.38938 -13.31701 -12.95857 -12.73277 -12.59257 -12.37618 -12.15515 -11.89005 -11.84733 -11.79653 -11.71179 -11.52697 -11.49471 -11.21959 -10.97343 -10.87998 -10.45875 -10.17387 -10.13312 -10.10151 -10.01690 -9.99094 -9.74818 -9.69903 -8.69241 -8.54445 -8.52864 -6.91268 -5.79496 -3.13249 1.83231 2.42852 2.54213 2.98199 3.09699 3.35203 3.40946 3.43308 4.07815 4.31039 4.34111 4.40811 4.42303 4.54064 4.66394 4.78960 4.82854 4.92254 4.95159 5.00565 5.07125 5.17360 5.28711 5.36149 5.37928 5.44227 5.45039 5.45925 5.51753 5.56713 5.57104 5.60109 5.66872 5.67995 5.83766 5.94708 5.96407 6.02165 6.15982 6.16964 6.23488 6.38191 6.51591 6.58988 6.59687 6.73001 6.97024 7.44314 7.48800 7.55504 7.73406 7.94044 8.08663 8.18685 9.14889 9.75138 10.38330 11.32231 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.002230 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.536141 B =12553.566590 C =13045.534046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.139 4.139 4 C 0.212 3.788 5 N -0.488 5.488 6 C -0.031 4.031 7 C -0.057 4.057 8 N -0.454 5.454 9 C 0.119 3.881 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.546 6.546 13 N -0.604 5.604 14 C 0.109 3.891 15 C -0.110 4.110 16 H 0.100 0.900 17 C 0.145 3.855 18 N -0.602 5.602 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.187 3.813 28 C -0.123 4.123 29 H 0.089 0.911 30 C 0.118 3.882 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.035 0.965 47 H 0.016 0.984 48 H 0.253 0.747 49 H 0.050 0.950 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 20.448 -7.914 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.197 4.197 4 C -0.050 4.050 5 N -0.206 5.206 6 C -0.179 4.179 7 C -0.189 4.189 8 N -0.136 5.136 9 C -0.004 4.004 10 C -0.193 4.193 11 C 0.318 3.682 12 O -0.424 6.424 13 N -0.337 5.337 14 C -0.015 4.015 15 C -0.129 4.129 16 H 0.118 0.882 17 C 0.018 3.982 18 N -0.328 5.328 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.062 3.938 28 C -0.143 4.143 29 H 0.107 0.893 30 C -0.003 4.003 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.186 0.814 39 H 0.191 0.809 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.033 0.967 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.095 0.905 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.625 21.030 -7.752 22.885 hybrid contribution 0.804 -1.934 -0.047 2.095 sum -3.821 19.095 -7.800 20.978 Atomic orbital electron populations 1.21777 0.92928 1.02225 1.02777 1.19583 0.96776 0.95832 0.90952 1.21775 1.00996 0.94242 1.02729 1.23224 0.96960 0.89174 0.95646 1.70173 1.23827 1.27601 0.98997 1.22272 1.01448 0.94598 0.99563 1.22767 1.08587 1.04721 0.82853 1.45492 1.38551 1.22777 1.06797 1.21596 0.96984 0.95295 0.86493 1.21961 1.00370 0.99298 0.97631 1.19812 0.84714 0.79495 0.84172 1.90731 1.19838 1.65859 1.65968 1.48254 1.16933 1.37736 1.30782 1.22028 0.83249 0.96502 0.99712 1.22971 1.00233 0.93464 0.96273 0.88173 1.21237 0.94606 0.89818 0.92508 1.44223 1.71842 1.09970 1.06814 1.19080 1.34099 0.86267 0.96363 0.90362 1.24807 1.01118 0.98637 0.95792 1.69953 1.49248 1.35448 1.02265 0.86031 0.77966 0.84220 0.77453 1.20507 1.21698 1.21685 1.21043 0.99383 0.85084 0.88333 1.23153 0.95084 0.98795 0.97219 0.89256 1.22015 0.98974 0.92908 0.86448 0.91785 0.92723 0.91317 0.90090 0.91807 0.92780 0.91347 0.81448 0.80922 0.87837 0.88112 0.88317 0.88054 0.91639 0.90947 0.94638 0.96662 0.93682 0.93237 0.93254 0.90505 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 2 C -0.01 -0.09 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.07 9.17 37.16 0.34 -0.73 16 4 C 0.21 2.27 6.41 -155.42 -1.00 1.27 16 5 N -0.49 -5.96 11.25 -10.81 -0.12 -6.08 16 6 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 7 C -0.06 -0.55 11.58 -16.56 -0.19 -0.74 16 8 N -0.45 -4.55 2.75 -113.90 -0.31 -4.87 16 9 C 0.12 1.13 4.98 -4.04 -0.02 1.11 16 10 C -0.15 -1.46 5.05 -27.89 -0.14 -1.60 16 11 C 0.53 7.24 7.84 -10.99 -0.09 7.16 16 12 O -0.55 -9.29 16.29 5.55 0.09 -9.20 16 13 N -0.60 -8.53 3.30 -172.26 -0.57 -9.10 16 14 C 0.11 1.28 5.77 -3.33 -0.02 1.26 16 15 C -0.11 -1.63 4.16 -88.25 -0.37 -2.00 16 16 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 17 C 0.14 2.76 6.49 -3.38 -0.02 2.74 16 18 N -0.60 -14.64 3.38 -171.85 -0.58 -15.22 16 19 C -0.23 -6.23 10.25 -15.06 -0.15 -6.38 16 20 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 21 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 22 N -0.92 -26.34 10.25 55.49 0.57 -25.77 16 23 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.19 4.23 4.77 -3.58 -0.02 4.22 16 28 C -0.12 -2.05 4.01 -88.60 -0.36 -2.40 16 29 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 30 C 0.12 1.95 6.22 -3.60 -0.02 1.92 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.62 6.85 -51.93 -0.36 0.26 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.10 0.94 7.25 -51.93 -0.38 0.56 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.76 7.43 -51.93 -0.39 0.38 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.02 0.31 7.72 -51.93 -0.40 -0.09 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.05 1.27 6.73 -51.93 -0.35 0.92 16 50 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 51 H 0.08 1.52 7.29 -51.93 -0.38 1.14 16 52 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 411.16 15.07 6.20 6.20 Total: -1.00 -32.93 411.16 -10.99 -43.93 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.92 Total: -0.49 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -2.32 Total: 3.89 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -1.02 Total: -61.03 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.93 -10.99 -43.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049097257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.860 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds