Wall clock time and date at job start Wed Apr 1 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30500 * 125.64958 * 60.01936 * 4 2 1 6 6 C 1.34125 * 109.25487 * 180.02562 * 5 4 2 7 7 C 1.34672 * 108.02330 * 0.02562 * 6 5 4 8 8 N 1.35038 * 125.64660 * 239.72132 * 4 2 1 9 9 C 1.46504 * 126.40062 * 359.97438 * 8 4 2 10 10 C 1.52994 * 109.47052 * 85.00342 * 9 8 4 11 11 C 1.50695 * 109.47600 * 179.97438 * 10 9 8 12 12 O 1.21288 * 119.99376 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00511 * 180.02562 * 11 10 9 14 14 C 1.46747 * 125.32906 * 359.69521 * 13 11 10 15 15 C 1.54113 * 106.62942 * 161.56441 * 14 13 11 16 16 H 1.08994 * 113.48713 * 151.37947 * 15 14 13 17 17 C 1.53970 * 109.45734 * 278.65775 * 15 14 13 18 18 N 1.46779 * 106.62438 * 138.17428 * 17 15 14 19 19 C 1.36933 * 125.33557 * 161.48350 * 18 17 15 20 20 H 1.08004 * 120.00048 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31616 * 119.99697 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47051 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47427 * 119.99957 * 23 21 19 26 26 H 1.48504 * 109.46956 * 239.99626 * 23 21 19 27 27 C 1.46663 * 109.32317 * 341.48412 * 18 17 15 28 28 C 1.53718 * 107.94607 * 0.54424 * 27 18 17 29 29 H 1.09007 * 113.05968 * 140.00252 * 28 27 18 30 30 C 1.46642 * 125.33026 * 180.02562 * 13 11 10 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 38 38 H 1.08001 * 125.99210 * 180.02562 * 6 5 4 39 39 H 1.07999 * 126.59350 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.47101 * 205.00236 * 9 8 4 41 41 H 1.08998 * 109.47048 * 325.00739 * 9 8 4 42 42 H 1.09000 * 109.47112 * 300.00694 * 10 9 8 43 43 H 1.09006 * 109.47390 * 59.99911 * 10 9 8 44 44 H 1.09002 * 110.00661 * 280.99826 * 14 13 11 45 45 H 1.09005 * 110.00764 * 42.36671 * 14 13 11 46 46 H 1.08994 * 110.02383 * 257.46718 * 17 15 14 47 47 H 1.08996 * 110.02726 * 18.88187 * 17 15 14 48 48 H 0.97007 * 120.00109 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.77402 * 240.92032 * 27 18 17 50 50 H 1.09001 * 109.77466 * 120.16536 * 27 18 17 51 51 H 1.08999 * 109.75771 * 300.45127 * 30 13 11 52 52 H 1.08997 * 109.76552 * 61.16927 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7863 -0.3616 -2.4638 6 6 2.3931 -1.2209 -3.2959 7 6 3.0393 -2.1372 -2.5500 8 7 2.8163 -1.8098 -1.2397 9 6 3.3288 -2.5219 -0.0664 10 6 2.2790 -3.5220 0.4219 11 6 2.8062 -4.2551 1.6284 12 8 3.9126 -4.0020 2.0560 13 7 2.0483 -5.1917 2.2322 14 6 0.6962 -5.5850 1.8192 15 6 0.4199 -6.9574 2.4637 16 1 -0.6361 -7.1385 2.6639 17 6 1.0697 -8.0638 1.6126 18 7 1.6799 -9.0123 2.5520 19 6 2.0417 -10.2992 2.2551 20 1 1.8825 -10.6891 1.2605 21 6 2.6119 -11.1030 3.2326 22 7 2.8054 -10.6280 4.4447 23 14 3.1061 -12.8583 2.8273 24 1 2.7862 -13.1470 1.4062 25 1 4.5646 -13.0261 3.0508 26 1 2.3600 -13.7973 3.7030 27 6 1.8413 -8.3657 3.8584 28 6 1.2930 -6.9338 3.7491 29 1 0.7348 -6.6217 4.6319 30 6 2.4431 -5.9725 3.4090 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 2.3680 -1.1844 -4.3750 39 1 3.6258 -2.9673 -2.9154 40 1 4.2411 -3.0547 -0.3345 41 1 3.5455 -1.8065 0.7269 42 1 1.3666 -2.9893 0.6899 43 1 2.0621 -4.2375 -0.3714 44 1 -0.0294 -4.8518 2.1713 45 1 0.6471 -5.6672 0.7334 46 1 0.3114 -8.5675 1.0133 47 1 1.8346 -7.6357 0.9648 48 1 3.2043 -11.1895 5.1278 49 1 2.8971 -8.3367 4.1276 50 1 1.2829 -8.9176 4.6146 51 1 3.3457 -6.5420 3.1876 52 1 2.6261 -5.3042 4.2504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049097257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:58 Heat of formation + Delta-G solvation = 28.093742 kcal Electronic energy + Delta-G solvation = -30977.085116 eV Core-core repulsion = 26977.175234 eV Total energy + Delta-G solvation = -3999.909882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.11650 -41.58746 -39.75874 -36.68208 -36.24533 -35.81907 -34.11360 -32.27791 -31.29590 -31.11530 -29.67600 -28.00421 -27.56485 -27.11781 -25.61001 -24.12816 -23.61335 -22.12394 -21.95043 -20.87159 -20.40146 -19.98323 -18.96283 -18.46693 -17.71789 -17.23685 -16.84238 -16.72361 -16.46968 -15.92635 -15.72990 -15.51915 -15.17604 -14.94370 -14.73245 -14.53474 -14.33500 -14.18593 -14.00079 -13.82895 -13.64589 -13.47208 -13.38928 -13.28270 -13.11868 -12.93401 -12.78713 -12.70250 -12.48952 -12.34529 -12.08079 -11.99275 -11.89790 -11.82915 -11.68686 -11.59397 -11.45428 -11.12623 -10.88325 -10.73852 -10.56491 -9.68458 -9.28448 -8.90279 -7.88080 -5.23004 1.08909 1.43875 1.44530 1.49596 1.54604 1.62074 2.11466 2.21404 2.47005 3.29063 3.33050 3.43161 3.47524 3.59979 3.62839 3.69777 3.80901 3.93242 3.95224 4.15564 4.20814 4.23938 4.27174 4.29583 4.35325 4.39922 4.52899 4.57714 4.63413 4.75486 4.78167 4.78675 4.82840 4.85622 4.91663 4.94210 4.99588 5.01622 5.10649 5.11800 5.21570 5.32400 5.35953 5.38403 5.46114 5.47482 5.60003 5.76642 5.87831 6.19372 6.24025 6.47599 7.02101 7.09604 7.18812 7.78126 8.38934 9.22081 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.002230 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.536141 B =12553.566590 C =13045.534046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.014 4.014 3 C -0.136 4.136 4 C 0.206 3.794 5 N -0.518 5.518 6 C -0.050 4.050 7 C -0.058 4.058 8 N -0.455 5.455 9 C 0.123 3.877 10 C -0.136 4.136 11 C 0.529 3.471 12 O -0.586 6.586 13 N -0.608 5.608 14 C 0.113 3.887 15 C -0.096 4.096 16 H 0.128 0.872 17 C 0.137 3.863 18 N -0.625 5.625 19 C -0.241 4.241 20 H 0.082 0.918 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.976 3.024 24 H -0.265 1.265 25 H -0.296 1.296 26 H -0.290 1.290 27 C 0.196 3.804 28 C -0.110 4.110 29 H 0.118 0.882 30 C 0.127 3.873 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.182 0.818 39 H 0.195 0.805 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.010 0.990 48 H 0.246 0.754 49 H 0.005 0.995 50 H 0.015 0.985 51 H 0.030 0.970 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 21.804 -8.947 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.057 4.057 5 N -0.237 5.237 6 C -0.197 4.197 7 C -0.191 4.191 8 N -0.137 5.137 9 C 0.000 4.000 10 C -0.176 4.176 11 C 0.319 3.681 12 O -0.467 6.467 13 N -0.340 5.340 14 C -0.009 4.009 15 C -0.115 4.115 16 H 0.146 0.854 17 C 0.012 3.988 18 N -0.351 5.351 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.805 3.195 24 H -0.190 1.190 25 H -0.223 1.223 26 H -0.217 1.217 27 C 0.071 3.929 28 C -0.130 4.130 29 H 0.136 0.864 30 C 0.004 3.996 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.199 0.801 39 H 0.212 0.788 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.056 0.944 49 H 0.023 0.977 50 H 0.033 0.967 51 H 0.049 0.951 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.686 22.406 -8.837 24.997 hybrid contribution 1.481 -2.354 0.223 2.790 sum -5.204 20.052 -8.614 22.436 Atomic orbital electron populations 1.21744 0.92167 1.02363 1.02963 1.19732 0.97375 0.95880 0.90388 1.21747 1.00493 0.94136 1.03028 1.23659 0.96753 0.89287 0.95966 1.70161 1.24986 1.28604 0.99970 1.22645 1.01801 0.94812 1.00459 1.23152 1.08228 1.04992 0.82688 1.45540 1.38470 1.22709 1.06964 1.21538 0.96789 0.95261 0.86371 1.21880 1.00902 0.99129 0.95667 1.20494 0.84002 0.79032 0.84616 1.90720 1.21698 1.67064 1.67211 1.48339 1.18083 1.37495 1.30068 1.22210 0.82542 0.95247 1.00878 1.22993 1.00787 0.93786 0.93959 0.85446 1.21472 0.94512 0.90320 0.92451 1.44553 1.72084 1.10080 1.08420 1.19458 1.33322 0.87787 0.96423 0.90063 1.25631 1.01925 1.02481 0.95898 1.70182 1.50309 1.36420 1.03021 0.85043 0.76925 0.79755 0.77825 1.18971 1.22299 1.21695 1.20738 0.96564 0.88487 0.87160 1.22979 0.95630 0.94601 0.99752 0.86358 1.21673 0.97076 0.92883 0.88000 0.89960 0.92567 0.92763 0.88959 0.89884 0.93516 0.92645 0.80064 0.78838 0.88364 0.87974 0.85871 0.86915 0.87397 0.88828 0.93820 0.97220 0.94425 0.97723 0.96727 0.95108 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.18 71.98 0.66 -1.01 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.23 16 3 C -0.14 -1.87 9.17 71.98 0.66 -1.21 16 4 C 0.21 4.02 6.41 138.13 0.89 4.91 16 5 N -0.52 -12.08 11.25 -188.13 -2.12 -14.20 16 6 C -0.05 -1.00 11.87 83.52 0.99 -0.01 16 7 C -0.06 -1.02 11.58 83.09 0.96 -0.06 16 8 N -0.45 -8.14 2.75 -514.28 -1.42 -9.55 16 9 C 0.12 2.05 4.98 86.38 0.43 2.48 16 10 C -0.14 -2.13 5.05 29.84 0.15 -1.98 16 11 C 0.53 13.24 7.84 87.66 0.69 13.92 16 12 O -0.59 -19.54 16.29 -3.05 -0.05 -19.59 16 13 N -0.61 -15.55 3.30 -817.30 -2.70 -18.25 16 14 C 0.11 2.12 5.77 86.71 0.50 2.62 16 15 C -0.10 -2.53 4.16 -9.26 -0.04 -2.57 16 16 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 17 C 0.14 5.06 6.49 86.65 0.56 5.62 16 18 N -0.63 -30.90 3.38 -697.60 -2.36 -33.26 16 19 C -0.24 -13.28 10.25 84.03 0.86 -12.42 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -3.75 5.48 84.86 0.47 -3.29 16 22 N -0.95 -56.76 10.25 21.65 0.22 -56.54 16 23 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 27 C 0.20 9.22 4.77 86.59 0.41 9.64 16 28 C -0.11 -3.54 4.01 -9.49 -0.04 -3.58 16 29 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 30 C 0.13 4.11 6.22 86.59 0.54 4.64 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 34 H 0.09 1.12 6.85 -2.39 -0.02 1.10 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.10 1.76 8.09 -2.39 -0.02 1.74 16 41 H 0.10 1.69 7.25 -2.39 -0.02 1.67 16 42 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.11 1.60 7.88 -2.38 -0.02 1.58 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 1.45 7.43 -2.38 -0.02 1.43 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.01 0.38 7.72 -2.39 -0.02 0.36 16 48 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 49 H 0.00 0.25 6.73 -2.39 -0.02 0.24 16 50 H 0.01 0.77 7.37 -2.39 -0.02 0.75 16 51 H 0.03 1.27 7.29 -2.39 -0.02 1.26 16 52 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -76.53 411.16 3.15 -73.38 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.89 Total: 12.90 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 8.65 Total: 17.48 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -8.37 Total: -131.80 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -76.53 3.15 -73.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049097257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.472 kcal (2) G-P(sol) polarization free energy of solvation -76.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds