Wall clock time and date at job start Wed Apr 1 2020 04:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 C 1.50700 * 109.47323 * 120.00300 * 2 1 3 5 5 C 1.35366 * 126.38235 * 325.23608 * 4 2 1 6 6 C 1.41507 * 105.50028 * 180.15841 * 5 4 2 7 7 C 1.47708 * 126.51709 * 179.90587 * 6 5 4 8 8 O 1.21574 * 120.00317 * 7.05800 * 7 6 5 9 9 N 1.34781 * 120.00083 * 187.06117 * 7 6 5 10 10 C 1.46792 * 119.57734 * 176.98226 * 9 7 6 11 11 C 1.53463 * 107.59622 * 232.06432 * 10 9 7 12 12 C 1.52737 * 108.43994 * 301.91932 * 11 10 9 13 13 C 1.53011 * 110.79748 * 63.77673 * 12 11 10 14 14 H 1.09004 * 112.10468 * 69.27174 * 13 12 11 15 15 C 1.45120 * 119.57307 * 357.00010 * 9 7 6 16 16 H 1.09006 * 110.60999 * 11.46037 * 15 9 7 17 17 C 1.54419 * 111.60967 * 248.64041 * 15 9 7 18 18 C 1.54565 * 102.44862 * 203.42485 * 17 15 9 19 19 N 1.47117 * 107.25769 * 21.66531 * 18 17 15 20 20 C 1.36938 * 125.76924 * 182.63392 * 19 18 17 21 21 H 1.08001 * 120.00088 * 174.74741 * 20 19 18 22 22 C 1.38810 * 120.00065 * 354.74786 * 20 19 18 23 23 N 1.31616 * 119.99665 * 5.16910 * 22 20 19 24 24 Si 1.86795 * 119.99945 * 185.16715 * 22 20 19 25 25 H 1.48504 * 109.47115 * 95.00213 * 24 22 20 26 26 H 1.48497 * 109.47275 * 214.99787 * 24 22 20 27 27 H 1.48495 * 109.47348 * 335.00048 * 24 22 20 28 28 N 1.31809 * 106.96431 * 359.63741 * 6 5 4 29 29 N 1.28468 * 110.07093 * 0.23184 * 28 6 5 30 30 C 1.46503 * 124.88413 * 179.97438 * 29 28 6 31 31 H 1.08991 * 109.47147 * 59.99909 * 1 2 3 32 32 H 1.09001 * 109.46685 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46670 * 299.99506 * 1 2 3 34 34 H 1.08999 * 109.47190 * 240.00443 * 2 1 3 35 35 H 1.08997 * 109.46867 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.46861 * 300.00312 * 3 2 1 37 37 H 1.08999 * 109.46753 * 60.00176 * 3 2 1 38 38 H 1.07998 * 127.25581 * 0.04722 * 5 4 2 39 39 H 1.09005 * 109.83529 * 112.54056 * 10 9 7 40 40 H 1.08999 * 109.83621 * 351.58749 * 10 9 7 41 41 H 1.09008 * 109.64213 * 182.23771 * 11 10 9 42 42 H 1.08994 * 109.81872 * 61.71055 * 11 10 9 43 43 H 1.08992 * 109.21715 * 303.43410 * 12 11 10 44 44 H 1.08996 * 109.21183 * 184.10928 * 12 11 10 45 45 H 1.09006 * 110.80708 * 321.66116 * 17 15 9 46 46 H 1.08999 * 110.81324 * 85.18298 * 17 15 9 47 47 H 1.08994 * 109.88492 * 262.24877 * 18 17 15 48 48 H 1.09007 * 109.88542 * 141.08097 * 18 17 15 49 49 H 0.97008 * 119.99840 * 179.97438 * 23 22 20 50 50 H 1.09006 * 109.46902 * 90.02146 * 30 29 28 51 51 H 1.08998 * 109.47140 * 210.01678 * 30 29 28 52 52 H 1.08996 * 109.46775 * 330.02576 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.4560 -0.7001 2.4552 6 6 2.2895 -1.5004 3.2721 7 6 2.0897 -1.8003 4.7046 8 8 1.0678 -1.4500 5.2623 9 7 3.0405 -2.4621 5.3935 10 6 2.8622 -2.6969 6.8315 11 6 4.1270 -2.1982 7.5433 12 6 5.3295 -2.9481 6.9736 13 6 5.5181 -2.6251 5.4899 14 1 5.8450 -1.5972 5.3322 15 6 4.2274 -2.9332 4.7041 16 1 4.2874 -2.5018 3.7048 17 6 4.2603 -4.4746 4.6167 18 6 5.7682 -4.7664 4.4437 19 7 6.5005 -3.5966 4.9534 20 6 7.8599 -3.4327 4.9346 21 1 8.2957 -2.4986 5.2571 22 6 8.6778 -4.4671 4.5011 23 7 8.1447 -5.5670 4.0128 24 14 10.5348 -4.2980 4.6108 25 1 11.0150 -4.9204 5.8707 26 1 11.1633 -4.9801 3.4511 27 1 10.9026 -2.8594 4.5978 28 7 3.2747 -1.9320 2.5103 29 7 3.1390 -1.4796 1.3156 30 6 4.0536 -1.7577 0.2054 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 0.5516 -0.1875 2.7478 39 1 2.7284 -3.7624 7.0185 40 1 1.9936 -2.1455 7.1914 41 1 4.0467 -2.3933 8.6128 42 1 4.2487 -1.1284 7.3742 43 1 5.1717 -4.0203 7.0900 44 1 6.2260 -2.6568 7.5207 45 1 3.8820 -4.9226 5.5356 46 1 3.6962 -4.8256 3.7526 47 1 5.9981 -4.9170 3.3889 48 1 6.0422 -5.6533 5.0152 49 1 8.7163 -6.2897 3.7095 50 1 3.7246 -2.6541 -0.3204 51 1 4.0564 -0.9129 -0.4833 52 1 5.0599 -1.9133 0.5940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049461973.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:17 Heat of formation + Delta-G solvation = 81.819691 kcal Electronic energy + Delta-G solvation = -32522.261914 eV Core-core repulsion = 28524.681765 eV Total energy + Delta-G solvation = -3997.580150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -42.74325 -39.97781 -37.86871 -36.01745 -34.86337 -33.59953 -32.48061 -32.00135 -29.73890 -28.94546 -28.28189 -27.46645 -27.31184 -24.79499 -24.30123 -23.18448 -22.29472 -21.62380 -20.36856 -19.95201 -19.53615 -18.20325 -17.12686 -16.63480 -16.43768 -16.29387 -15.51318 -14.78611 -14.70496 -14.67160 -14.38265 -14.19784 -13.91109 -13.68195 -13.56176 -13.31107 -13.25254 -12.87696 -12.69380 -12.61791 -12.48890 -12.34044 -11.98946 -11.86162 -11.78229 -11.51420 -11.40937 -11.17255 -11.00363 -10.87903 -10.75614 -10.55264 -10.47818 -10.37819 -10.05570 -10.01822 -9.73062 -9.56509 -9.16640 -8.99818 -8.86603 -8.59296 -8.11259 -6.81063 -5.70010 -3.02557 1.71538 2.14337 2.45251 3.34194 3.39656 3.45736 3.46727 3.63824 4.21165 4.37184 4.48864 4.57042 4.79063 4.83546 5.01406 5.06453 5.18927 5.31086 5.34807 5.37088 5.38319 5.43813 5.47350 5.49848 5.55441 5.57394 5.59114 5.70419 5.73963 5.76080 5.79153 5.92940 5.94723 5.99962 6.08675 6.22372 6.27571 6.29394 6.42028 6.44619 6.52524 6.62200 6.65468 6.77391 7.00407 7.09568 7.24447 7.58968 7.67042 7.73873 7.85073 8.07951 8.26509 8.48272 9.23116 9.83000 10.50950 11.41421 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.003761 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.108870 B = 7443.431625 C = 9171.987341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.015 3.985 5 C -0.175 4.175 6 C -0.012 4.012 7 C 0.599 3.401 8 O -0.549 6.549 9 N -0.578 5.578 10 C 0.112 3.888 11 C -0.132 4.132 12 C -0.130 4.130 13 C 0.157 3.843 14 H 0.055 0.945 15 C 0.093 3.907 16 H 0.151 0.849 17 C -0.149 4.149 18 C 0.185 3.815 19 N -0.597 5.597 20 C -0.223 4.223 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 N -0.244 5.244 29 N -0.281 5.281 30 C 0.081 3.919 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.158 0.842 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.045 0.955 48 H 0.041 0.959 49 H 0.251 0.749 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 10.180 -8.082 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.109 4.109 5 C -0.203 4.203 6 C -0.171 4.171 7 C 0.386 3.614 8 O -0.426 6.426 9 N -0.308 5.308 10 C -0.010 4.010 11 C -0.170 4.170 12 C -0.170 4.170 13 C 0.048 3.952 14 H 0.073 0.927 15 C -0.013 4.013 16 H 0.167 0.833 17 C -0.188 4.188 18 C 0.060 3.940 19 N -0.322 5.322 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.207 1.207 28 N -0.079 5.079 29 N -0.068 5.068 30 C -0.059 4.059 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.176 0.824 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.110 0.890 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.965 9.522 -7.955 17.945 hybrid contribution 0.627 0.202 0.091 0.665 sum -12.338 9.725 -7.864 17.568 Atomic orbital electron populations 1.21814 0.93130 1.02562 1.02473 1.19659 0.96698 0.95387 0.92634 1.21859 1.01181 0.94634 1.02567 1.21339 0.91079 1.00457 0.98035 1.21352 1.02763 1.05127 0.91104 1.21895 0.95791 1.04203 0.95173 1.17071 0.83034 0.77593 0.83695 1.90725 1.27738 1.54746 1.69433 1.47500 1.19970 1.54180 1.09105 1.21698 0.98885 1.00958 0.79420 1.21919 0.95435 1.00560 0.99136 1.22104 0.96336 1.00222 0.98308 1.21351 0.88747 0.93916 0.91162 0.92651 1.22978 0.83234 0.95775 0.99279 0.83342 1.23062 1.00412 0.95038 1.00285 1.21109 0.84051 0.90058 0.98806 1.44698 1.01308 1.16335 1.69854 1.19037 0.80039 0.98614 1.37455 0.90585 1.24773 0.97808 0.96334 1.01395 1.69977 1.33039 1.06640 1.47082 0.86157 0.85539 0.77234 0.77189 1.21721 1.21861 1.20735 1.73470 1.22505 1.20666 0.91224 1.45625 1.19038 1.34071 1.08017 1.22215 0.94369 1.03033 0.86326 0.91906 0.92164 0.91763 0.90183 0.92623 0.91811 0.91835 0.82446 0.91500 0.89266 0.91408 0.91973 0.91902 0.92324 0.92629 0.92414 0.93632 0.94041 0.93873 0.89624 0.88978 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.78 37.16 0.33 -0.66 16 2 C -0.02 -0.18 2.89 -91.77 -0.27 -0.45 16 3 C -0.14 -1.01 9.18 37.16 0.34 -0.67 16 4 C 0.02 0.18 5.84 -82.21 -0.48 -0.30 16 5 C -0.18 -2.44 9.96 -39.36 -0.39 -2.83 16 6 C -0.01 -0.19 6.86 -82.76 -0.57 -0.76 16 7 C 0.60 10.96 7.66 -12.39 -0.09 10.86 16 8 O -0.55 -10.80 16.27 5.30 0.09 -10.71 16 9 N -0.58 -10.26 2.73 -166.17 -0.45 -10.72 16 10 C 0.11 1.78 6.15 -3.64 -0.02 1.76 16 11 C -0.13 -2.02 6.11 -26.63 -0.16 -2.19 16 12 C -0.13 -2.44 5.10 -26.86 -0.14 -2.57 16 13 C 0.16 3.29 3.60 -66.35 -0.24 3.05 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 15 C 0.09 1.78 2.88 -67.29 -0.19 1.59 16 16 H 0.15 2.96 3.80 -119.68 -0.45 2.51 16 17 C -0.15 -2.97 6.08 -25.17 -0.15 -3.12 16 18 C 0.18 4.48 5.19 -2.88 -0.01 4.47 16 19 N -0.60 -14.92 2.91 -162.19 -0.47 -15.39 16 20 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 21 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 22 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 23 N -0.92 -26.58 10.36 55.49 0.58 -26.00 16 24 Si 0.91 21.87 29.56 -169.99 -5.02 16.85 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 N -0.24 -4.01 8.27 33.42 0.28 -3.74 16 29 N -0.28 -3.65 3.70 -63.85 -0.24 -3.89 16 30 C 0.08 0.74 10.89 59.85 0.65 1.39 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.46 7.35 -51.93 -0.38 0.08 16 34 H 0.08 0.51 7.42 -51.93 -0.39 0.13 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.16 1.99 7.47 -52.49 -0.39 1.60 16 39 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 40 H 0.09 1.38 6.96 -51.93 -0.36 1.02 16 41 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.26 7.12 -51.93 -0.37 0.89 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.07 6.81 -51.93 -0.35 0.72 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 1.21 7.46 -51.93 -0.39 0.83 16 48 H 0.04 1.11 7.47 -51.92 -0.39 0.73 16 49 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.56 7.44 -51.93 -0.39 0.17 16 52 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -32.70 398.72 -9.76 -42.47 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.87 Total: 2.09 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.65 Total: 3.02 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.31 Total: -59.73 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.70 -9.76 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049461973.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.287 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds