Wall clock time and date at job start Wed Apr 1 2020 04:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47191 * 2 1 4 4 C 1.50701 * 109.47433 * 119.99991 * 2 1 3 5 5 C 1.35371 * 126.37937 * 324.97652 * 4 2 1 6 6 C 1.41504 * 105.49988 * 180.02562 * 5 4 2 7 7 C 1.47712 * 126.51964 * 179.97438 * 6 5 4 8 8 O 1.21571 * 119.99678 * 5.46136 * 7 6 5 9 9 N 1.34771 * 119.99884 * 185.46366 * 7 6 5 10 10 C 1.47849 * 122.23321 * 354.52800 * 9 7 6 11 11 C 1.52268 * 110.74790 * 126.43014 * 10 9 7 12 12 C 1.53879 * 111.05975 * 49.89022 * 11 10 9 13 13 C 1.51084 * 107.40184 * 302.09581 * 12 11 10 14 14 H 1.09000 * 108.73734 * 308.49890 * 13 12 11 15 15 C 1.45729 * 122.22566 * 174.51439 * 9 7 6 16 16 H 1.08995 * 111.07152 * 119.49879 * 15 9 7 17 17 C 1.53431 * 117.00757 * 350.42338 * 15 9 7 18 18 C 1.55472 * 101.67413 * 207.02203 * 17 15 9 19 19 N 1.45025 * 119.18448 * 183.84574 * 13 12 11 20 20 C 1.36938 * 126.56031 * 28.80036 * 19 13 12 21 21 H 1.08001 * 119.99896 * 359.97438 * 20 19 13 22 22 C 1.38807 * 120.00129 * 179.97438 * 20 19 13 23 23 N 1.31619 * 120.00124 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00079 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47493 * 90.00130 * 24 22 20 26 26 H 1.48503 * 109.47075 * 209.99825 * 24 22 20 27 27 H 1.48498 * 109.47352 * 329.99727 * 24 22 20 28 28 N 1.31812 * 106.96103 * 0.24202 * 6 5 4 29 29 N 1.28468 * 110.07634 * 359.59478 * 28 6 5 30 30 C 1.46501 * 124.88563 * 180.13078 * 29 28 6 31 31 H 1.09006 * 109.46861 * 60.00108 * 1 2 3 32 32 H 1.08998 * 109.47058 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47110 * 300.00229 * 1 2 3 34 34 H 1.08998 * 109.47551 * 240.00360 * 2 1 3 35 35 H 1.08999 * 109.47107 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.46927 * 300.00102 * 3 2 1 37 37 H 1.08998 * 109.46580 * 59.99765 * 3 2 1 38 38 H 1.07992 * 127.25133 * 359.97438 * 5 4 2 39 39 H 1.09004 * 109.16091 * 247.90944 * 10 9 7 40 40 H 1.09003 * 109.16062 * 7.14001 * 10 9 7 41 41 H 1.09000 * 110.12037 * 288.97042 * 11 10 9 42 42 H 1.09007 * 108.49069 * 169.74804 * 11 10 9 43 43 H 1.09003 * 109.88396 * 182.59826 * 12 11 10 44 44 H 1.08998 * 109.87710 * 61.59330 * 12 11 10 45 45 H 1.08997 * 110.98986 * 325.12397 * 17 15 9 46 46 H 1.09000 * 110.98068 * 88.92811 * 17 15 9 47 47 H 1.08993 * 109.95623 * 141.98155 * 18 17 15 48 48 H 1.08994 * 109.96325 * 263.18632 * 18 17 15 49 49 H 0.97001 * 120.00436 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.46897 * 270.32775 * 30 29 28 51 51 H 1.09004 * 109.46764 * 30.33258 * 30 29 28 52 52 H 1.08994 * 109.46839 * 150.32340 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4586 -0.6960 2.4565 6 6 2.2891 -1.5005 3.2721 7 6 2.0899 -1.7996 4.7049 8 8 1.0837 -1.4189 5.2711 9 7 3.0237 -2.4944 5.3844 10 6 4.2070 -3.0823 4.7211 11 6 5.4894 -2.6326 5.4080 12 6 5.4033 -2.8402 6.9303 13 6 4.2083 -2.0599 7.4258 14 1 4.2796 -1.0373 7.0554 15 6 2.9343 -2.7160 6.8219 16 1 2.8879 -3.7803 7.0522 17 6 1.8516 -1.9376 7.5809 18 6 2.4711 -1.8433 9.0038 19 7 3.9374 -2.0097 8.8497 20 6 4.8587 -2.0989 9.8589 21 1 5.9061 -2.2199 9.6248 22 6 4.4465 -2.0337 11.1827 23 7 3.1702 -1.8858 11.4681 24 14 5.7032 -2.1560 12.5594 25 1 6.1931 -0.7974 12.9047 26 1 5.0709 -2.7724 13.7534 27 1 6.8444 -2.9956 12.1147 28 7 3.2774 -1.9276 2.5117 29 7 3.1390 -1.4794 1.3157 30 6 4.0540 -1.7571 0.2057 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 0.5574 -0.1786 2.7504 39 1 4.1282 -4.1692 4.7463 40 1 4.2375 -2.7500 3.6834 41 1 5.6751 -1.5784 5.2023 42 1 6.3175 -3.2223 5.0145 43 1 6.3112 -2.4702 7.4068 44 1 5.2731 -3.8991 7.1531 45 1 1.7093 -0.9463 7.1505 46 1 0.9132 -2.4918 7.5996 47 1 2.2511 -0.8696 9.4415 48 1 2.0707 -2.6347 9.6372 49 1 2.8821 -1.8399 12.3932 50 1 4.8364 -0.9986 0.1815 51 1 4.5046 -2.7399 0.3436 52 1 3.5014 -1.7394 -0.7336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049461974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:21 Heat of formation + Delta-G solvation = 86.220780 kcal Electronic energy + Delta-G solvation = -31923.339163 eV Core-core repulsion = 27925.949859 eV Total energy + Delta-G solvation = -3997.389304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.87953 -39.98924 -37.55343 -36.15483 -35.26489 -33.64445 -32.48924 -32.03194 -29.91583 -28.98672 -28.10627 -27.56408 -27.47248 -24.79638 -24.35902 -23.22863 -22.26193 -21.31530 -20.64600 -20.22513 -19.46376 -18.45363 -17.26102 -16.64233 -16.46819 -16.01117 -15.46129 -14.98717 -14.85512 -14.59683 -14.32531 -14.06997 -14.04209 -13.81818 -13.55781 -13.48248 -13.35145 -13.09738 -12.85896 -12.67289 -12.48761 -12.32955 -12.12217 -11.97897 -11.74570 -11.61900 -11.54345 -11.26952 -11.20235 -10.82193 -10.79184 -10.48742 -10.37233 -10.09802 -9.96073 -9.74417 -9.72768 -9.52978 -9.21231 -9.07431 -9.04058 -8.52371 -8.05826 -6.74177 -5.62543 -2.96295 1.57175 2.05538 2.24795 3.31266 3.45227 3.49743 3.51807 3.65579 4.07304 4.17302 4.40214 4.56573 4.61818 4.68034 4.74427 4.88084 5.00530 5.05598 5.17510 5.25520 5.36086 5.37181 5.39514 5.46809 5.49279 5.56225 5.61653 5.65083 5.68709 5.73775 5.82917 5.83063 5.95438 5.97844 6.01200 6.18227 6.24489 6.31831 6.42745 6.46622 6.54022 6.64969 6.73448 6.83940 6.95938 7.00541 7.30382 7.66420 7.73133 7.77898 7.89816 7.94270 8.33079 8.56047 9.27284 9.91112 10.60202 11.49627 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.002625 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.926300 B =10665.020321 C =11341.830045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.144 4.144 4 C 0.017 3.983 5 C -0.174 4.174 6 C 0.001 3.999 7 C 0.599 3.401 8 O -0.527 6.527 9 N -0.585 5.585 10 C 0.082 3.918 11 C -0.124 4.124 12 C -0.116 4.116 13 C 0.159 3.841 14 H 0.017 0.983 15 C 0.117 3.883 16 H 0.080 0.920 17 C -0.128 4.128 18 C 0.173 3.827 19 N -0.593 5.593 20 C -0.223 4.223 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 N -0.265 5.265 29 N -0.288 5.288 30 C 0.085 3.915 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.160 0.840 39 H 0.061 0.939 40 H 0.127 0.873 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.057 0.943 49 H 0.252 0.748 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 1.157 -29.037 29.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.107 4.107 5 C -0.202 4.202 6 C -0.158 4.158 7 C 0.385 3.615 8 O -0.402 6.402 9 N -0.317 5.317 10 C -0.041 4.041 11 C -0.163 4.163 12 C -0.155 4.155 13 C 0.050 3.950 14 H 0.034 0.966 15 C 0.013 3.987 16 H 0.098 0.902 17 C -0.166 4.166 18 C 0.049 3.951 19 N -0.318 5.318 20 C -0.352 4.352 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 N -0.099 5.099 29 N -0.074 5.074 30 C -0.056 4.056 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.178 0.822 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.102 0.898 51 H 0.115 0.885 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.069 0.687 -28.557 28.566 hybrid contribution 0.215 0.292 0.781 0.861 sum 0.284 0.980 -27.776 27.795 Atomic orbital electron populations 1.21832 0.93016 1.02618 1.02690 1.19666 0.96813 0.95412 0.92382 1.21854 1.01039 0.94581 1.02756 1.21330 0.91026 1.00260 0.98104 1.21442 1.03026 1.04678 0.91012 1.22125 0.95048 1.03283 0.95385 1.16938 0.82960 0.78372 0.83208 1.90794 1.27952 1.53404 1.68021 1.47832 1.22617 1.52469 1.08761 1.22410 0.84060 0.97600 1.00000 1.21786 0.96742 1.01524 0.96285 1.21456 0.99713 1.00754 0.93577 1.20752 0.92031 0.95705 0.86509 0.96568 1.22394 0.99533 0.99453 0.77358 0.90250 1.22904 0.96391 1.00427 0.96896 1.21730 0.82170 1.00829 0.90405 1.44100 1.03533 1.85356 0.98816 1.18990 0.88403 1.42969 0.84803 0.90410 1.24797 0.96221 1.02384 0.97090 1.69950 1.12964 1.56391 1.17471 0.86152 0.80192 0.77563 0.82048 1.21712 1.21737 1.20770 1.73248 1.23324 1.21982 0.91372 1.45484 1.19216 1.34857 1.07852 1.22132 0.92978 1.04238 0.86255 0.91833 0.92156 0.91584 0.90335 0.92736 0.91752 0.91699 0.82235 0.92093 0.85653 0.92047 0.91402 0.91736 0.91895 0.90512 0.91864 0.94279 0.92526 0.93778 0.89792 0.88494 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.78 37.16 0.33 -0.53 16 2 C -0.02 -0.14 3.10 -91.77 -0.28 -0.43 16 3 C -0.14 -0.84 9.18 37.16 0.34 -0.50 16 4 C 0.02 0.17 5.84 -82.21 -0.48 -0.31 16 5 C -0.17 -2.24 9.96 -39.36 -0.39 -2.64 16 6 C 0.00 0.02 6.93 -82.76 -0.57 -0.55 16 7 C 0.60 11.07 7.65 -12.39 -0.09 10.98 16 8 O -0.53 -11.08 13.98 5.30 0.07 -11.00 16 9 N -0.58 -10.54 2.90 -165.41 -0.48 -11.02 16 10 C 0.08 1.22 6.27 -3.68 -0.02 1.19 16 11 C -0.12 -1.84 5.93 -26.65 -0.16 -1.99 16 12 C -0.12 -2.16 5.43 -27.24 -0.15 -2.31 16 13 C 0.16 3.54 2.58 -68.36 -0.18 3.37 16 14 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 15 C 0.12 2.41 3.30 -66.79 -0.22 2.19 16 16 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 17 C -0.13 -2.87 4.97 -25.19 -0.13 -2.99 16 18 C 0.17 4.54 5.47 -1.69 -0.01 4.53 16 19 N -0.59 -15.81 3.35 -163.29 -0.55 -16.36 16 20 C -0.22 -6.34 9.94 -15.06 -0.15 -6.49 16 21 H 0.08 2.12 7.31 -52.49 -0.38 1.74 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -27.88 10.46 55.49 0.58 -27.30 16 24 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 28 N -0.26 -3.44 8.42 33.42 0.28 -3.16 16 29 N -0.29 -2.83 3.70 -63.85 -0.24 -3.06 16 30 C 0.08 0.41 11.11 59.85 0.66 1.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.44 7.35 -51.93 -0.38 0.06 16 34 H 0.08 0.35 6.86 -51.93 -0.36 -0.01 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.16 1.97 7.47 -52.49 -0.39 1.58 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.13 1.72 3.94 -84.25 -0.33 1.39 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.06 1.23 7.70 -51.93 -0.40 0.83 16 44 H 0.06 1.17 8.12 -51.93 -0.42 0.74 16 45 H 0.08 1.80 6.44 -51.93 -0.33 1.46 16 46 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 48 H 0.06 1.60 7.19 -51.93 -0.37 1.23 16 49 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 50 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.09 0.22 6.88 -51.93 -0.36 -0.14 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -34.82 396.75 -9.73 -44.56 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.76 Total: -0.46 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.60 Total: 4.25 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.40 Total: -60.90 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.82 -9.73 -44.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049461974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.778 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds