Wall clock time and date at job start Wed Apr 1 2020 04:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47191 * 2 1 4 4 C 1.50701 * 109.47433 * 119.99991 * 2 1 3 5 5 C 1.35371 * 126.37937 * 324.97652 * 4 2 1 6 6 C 1.41504 * 105.49988 * 180.02562 * 5 4 2 7 7 C 1.47712 * 126.51964 * 179.97438 * 6 5 4 8 8 O 1.21571 * 119.99678 * 5.46136 * 7 6 5 9 9 N 1.34771 * 119.99884 * 185.46366 * 7 6 5 10 10 C 1.47849 * 122.23321 * 354.52800 * 9 7 6 11 11 C 1.52268 * 110.74790 * 126.43014 * 10 9 7 12 12 C 1.53879 * 111.05975 * 49.89022 * 11 10 9 13 13 C 1.51084 * 107.40184 * 302.09581 * 12 11 10 14 14 H 1.09000 * 108.73734 * 308.49890 * 13 12 11 15 15 C 1.45729 * 122.22566 * 174.51439 * 9 7 6 16 16 H 1.08995 * 111.07152 * 119.49879 * 15 9 7 17 17 C 1.53431 * 117.00757 * 350.42338 * 15 9 7 18 18 C 1.55472 * 101.67413 * 207.02203 * 17 15 9 19 19 N 1.45025 * 119.18448 * 183.84574 * 13 12 11 20 20 C 1.36938 * 126.56031 * 28.80036 * 19 13 12 21 21 H 1.08001 * 119.99896 * 359.97438 * 20 19 13 22 22 C 1.38807 * 120.00129 * 179.97438 * 20 19 13 23 23 N 1.31619 * 120.00124 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00079 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47493 * 90.00130 * 24 22 20 26 26 H 1.48503 * 109.47075 * 209.99825 * 24 22 20 27 27 H 1.48498 * 109.47352 * 329.99727 * 24 22 20 28 28 N 1.31812 * 106.96103 * 0.24202 * 6 5 4 29 29 N 1.28468 * 110.07634 * 359.59478 * 28 6 5 30 30 C 1.46501 * 124.88563 * 180.13078 * 29 28 6 31 31 H 1.09006 * 109.46861 * 60.00108 * 1 2 3 32 32 H 1.08998 * 109.47058 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47110 * 300.00229 * 1 2 3 34 34 H 1.08998 * 109.47551 * 240.00360 * 2 1 3 35 35 H 1.08999 * 109.47107 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.46927 * 300.00102 * 3 2 1 37 37 H 1.08998 * 109.46580 * 59.99765 * 3 2 1 38 38 H 1.07992 * 127.25133 * 359.97438 * 5 4 2 39 39 H 1.09004 * 109.16091 * 247.90944 * 10 9 7 40 40 H 1.09003 * 109.16062 * 7.14001 * 10 9 7 41 41 H 1.09000 * 110.12037 * 288.97042 * 11 10 9 42 42 H 1.09007 * 108.49069 * 169.74804 * 11 10 9 43 43 H 1.09003 * 109.88396 * 182.59826 * 12 11 10 44 44 H 1.08998 * 109.87710 * 61.59330 * 12 11 10 45 45 H 1.08997 * 110.98986 * 325.12397 * 17 15 9 46 46 H 1.09000 * 110.98068 * 88.92811 * 17 15 9 47 47 H 1.08993 * 109.95623 * 141.98155 * 18 17 15 48 48 H 1.08994 * 109.96325 * 263.18632 * 18 17 15 49 49 H 0.97001 * 120.00436 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.46897 * 270.32775 * 30 29 28 51 51 H 1.09004 * 109.46764 * 30.33258 * 30 29 28 52 52 H 1.08994 * 109.46839 * 150.32340 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4586 -0.6960 2.4565 6 6 2.2891 -1.5005 3.2721 7 6 2.0899 -1.7996 4.7049 8 8 1.0837 -1.4189 5.2711 9 7 3.0237 -2.4944 5.3844 10 6 4.2070 -3.0823 4.7211 11 6 5.4894 -2.6326 5.4080 12 6 5.4033 -2.8402 6.9303 13 6 4.2083 -2.0599 7.4258 14 1 4.2796 -1.0373 7.0554 15 6 2.9343 -2.7160 6.8219 16 1 2.8879 -3.7803 7.0522 17 6 1.8516 -1.9376 7.5809 18 6 2.4711 -1.8433 9.0038 19 7 3.9374 -2.0097 8.8497 20 6 4.8587 -2.0989 9.8589 21 1 5.9061 -2.2199 9.6248 22 6 4.4465 -2.0337 11.1827 23 7 3.1702 -1.8858 11.4681 24 14 5.7032 -2.1560 12.5594 25 1 6.1931 -0.7974 12.9047 26 1 5.0709 -2.7724 13.7534 27 1 6.8444 -2.9956 12.1147 28 7 3.2774 -1.9276 2.5117 29 7 3.1390 -1.4794 1.3157 30 6 4.0540 -1.7571 0.2057 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 0.5574 -0.1786 2.7504 39 1 4.1282 -4.1692 4.7463 40 1 4.2375 -2.7500 3.6834 41 1 5.6751 -1.5784 5.2023 42 1 6.3175 -3.2223 5.0145 43 1 6.3112 -2.4702 7.4068 44 1 5.2731 -3.8991 7.1531 45 1 1.7093 -0.9463 7.1505 46 1 0.9132 -2.4918 7.5996 47 1 2.2511 -0.8696 9.4415 48 1 2.0707 -2.6347 9.6372 49 1 2.8821 -1.8399 12.3932 50 1 4.8364 -0.9986 0.1815 51 1 4.5046 -2.7399 0.3436 52 1 3.5014 -1.7394 -0.7336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049461974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:20 Heat of formation + Delta-G solvation = 64.766993 kcal Electronic energy + Delta-G solvation = -31924.269469 eV Core-core repulsion = 27925.949859 eV Total energy + Delta-G solvation = -3998.319610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.77568 -41.54132 -39.17865 -37.05213 -36.61081 -34.58830 -34.16417 -33.78158 -31.07848 -30.60635 -29.69074 -28.41534 -28.00512 -26.43832 -26.10686 -24.14180 -23.33250 -22.79095 -22.29626 -21.44680 -20.96265 -19.67562 -18.54417 -18.10786 -17.35001 -17.23048 -17.12786 -16.63554 -16.28106 -15.82292 -15.61430 -15.36487 -15.21618 -15.02024 -14.79162 -14.64759 -14.28252 -14.19391 -13.94787 -13.89429 -13.48724 -13.45645 -13.34925 -13.18838 -13.00221 -12.88020 -12.73218 -12.62129 -12.31765 -12.25591 -12.08254 -12.04951 -11.85268 -11.76890 -11.74056 -11.67751 -11.48745 -11.03042 -10.77026 -10.59721 -10.09803 -9.92408 -9.55638 -8.92443 -7.84101 -5.21560 0.50384 1.12403 1.45221 1.48129 1.51104 1.56953 1.98972 2.35578 2.50500 3.18892 3.34173 3.38798 3.52671 3.71788 3.89541 3.96667 4.04954 4.10222 4.13746 4.21042 4.27435 4.29555 4.35977 4.43981 4.50416 4.54742 4.55654 4.63634 4.65642 4.70166 4.74267 4.84298 4.88274 4.94990 5.00404 5.01965 5.03920 5.07749 5.10528 5.17067 5.24020 5.35139 5.39770 5.44168 5.46313 5.47526 5.56987 5.62794 5.70975 5.96534 6.16887 6.43945 6.87433 7.04652 7.17561 7.74254 8.44923 9.27980 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.002625 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.926300 B =10665.020321 C =11341.830045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 C -0.143 4.143 4 C 0.036 3.964 5 C -0.198 4.198 6 C -0.033 4.033 7 C 0.593 3.407 8 O -0.567 6.567 9 N -0.588 5.588 10 C 0.080 3.920 11 C -0.113 4.113 12 C -0.111 4.111 13 C 0.156 3.844 14 H -0.005 1.005 15 C 0.130 3.870 16 H 0.081 0.919 17 C -0.111 4.111 18 C 0.185 3.815 19 N -0.611 5.611 20 C -0.234 4.234 21 H 0.089 0.911 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.982 3.018 25 H -0.288 1.288 26 H -0.295 1.295 27 H -0.264 1.264 28 N -0.266 5.266 29 N -0.274 5.274 30 C 0.069 3.931 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.152 0.848 39 H 0.077 0.923 40 H 0.143 0.857 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.001 0.999 48 H 0.029 0.971 49 H 0.247 0.753 50 H 0.102 0.898 51 H 0.107 0.893 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 0.369 -33.227 33.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.201 4.201 4 C -0.090 4.090 5 C -0.227 4.227 6 C -0.190 4.190 7 C 0.381 3.619 8 O -0.445 6.445 9 N -0.319 5.319 10 C -0.041 4.041 11 C -0.152 4.152 12 C -0.149 4.149 13 C 0.048 3.952 14 H 0.012 0.988 15 C 0.025 3.975 16 H 0.099 0.901 17 C -0.149 4.149 18 C 0.060 3.940 19 N -0.336 5.336 20 C -0.362 4.362 21 H 0.107 0.893 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.810 3.190 25 H -0.215 1.215 26 H -0.222 1.222 27 H -0.188 1.188 28 N -0.103 5.103 29 N -0.061 5.061 30 C -0.069 4.069 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.169 0.831 39 H 0.095 0.905 40 H 0.160 0.840 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.020 0.980 48 H 0.048 0.952 49 H 0.056 0.944 50 H 0.120 0.880 51 H 0.126 0.874 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.544 -0.117 -32.808 32.906 hybrid contribution -0.540 0.601 1.916 2.080 sum 2.004 0.484 -30.891 30.960 Atomic orbital electron populations 1.21850 0.92998 1.02376 1.03057 1.19849 0.96773 0.95579 0.91630 1.21850 1.01230 0.94093 1.02912 1.21763 0.90091 0.98937 0.98182 1.21534 1.03389 1.05405 0.92324 1.21649 0.97303 1.05977 0.94081 1.17432 0.82320 0.77489 0.84668 1.90752 1.29542 1.54823 1.69360 1.47913 1.23845 1.52749 1.07403 1.22686 0.82529 0.98400 1.00517 1.21746 0.98155 1.02079 0.93185 1.21427 0.97231 0.99968 0.96278 1.20886 0.94871 0.95322 0.84162 0.98806 1.22036 0.97343 0.98771 0.79332 0.90088 1.22636 0.97073 1.00339 0.94895 1.21421 0.82968 0.97651 0.91967 1.44358 1.03322 1.85261 1.00682 1.19422 0.89246 1.42063 0.85485 0.89313 1.25728 0.98218 1.02641 0.99688 1.70181 1.15056 1.57738 1.17453 0.85029 0.78080 0.77545 0.78385 1.21534 1.22151 1.18804 1.73027 1.22531 1.22180 0.92522 1.45973 1.19367 1.33093 1.07712 1.22687 0.93169 1.05510 0.85577 0.89652 0.92719 0.93110 0.87079 0.92398 0.89583 0.93640 0.83064 0.90463 0.84012 0.92551 0.87329 0.92314 0.91596 0.91729 0.91387 0.98032 0.95232 0.94400 0.87990 0.87396 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.78 71.98 0.63 -0.79 16 2 C -0.02 -0.17 3.10 -11.54 -0.04 -0.21 16 3 C -0.14 -1.23 9.18 71.98 0.66 -0.57 16 4 C 0.04 0.63 5.84 41.41 0.24 0.87 16 5 C -0.20 -5.14 9.96 22.41 0.22 -4.91 16 6 C -0.03 -1.00 6.93 42.46 0.29 -0.70 16 7 C 0.59 22.57 7.65 86.75 0.66 23.23 16 8 O -0.57 -25.24 13.98 -3.94 -0.06 -25.29 16 9 N -0.59 -21.29 2.90 -795.50 -2.31 -23.60 16 10 C 0.08 2.20 6.27 85.88 0.54 2.74 16 11 C -0.11 -3.05 5.93 30.65 0.18 -2.87 16 12 C -0.11 -3.99 5.43 30.27 0.16 -3.82 16 13 C 0.16 7.10 2.58 45.50 0.12 7.22 16 14 H -0.01 -0.27 8.06 -2.39 -0.02 -0.29 16 15 C 0.13 5.53 3.30 46.14 0.15 5.69 16 16 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 17 C -0.11 -5.30 4.97 31.59 0.16 -5.15 16 18 C 0.19 10.39 5.47 86.87 0.48 10.87 16 19 N -0.61 -33.93 3.35 -670.51 -2.25 -36.18 16 20 C -0.23 -13.56 9.94 84.03 0.84 -12.72 16 21 H 0.09 4.84 7.31 -2.91 -0.02 4.82 16 22 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 23 N -0.96 -60.53 10.46 21.65 0.23 -60.30 16 24 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 28 N -0.27 -6.38 8.42 -48.17 -0.41 -6.79 16 29 N -0.27 -4.53 3.70 -355.93 -1.32 -5.84 16 30 C 0.07 0.33 11.11 127.77 1.42 1.75 16 31 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.65 7.35 -2.39 -0.02 0.64 16 34 H 0.11 0.37 6.86 -2.39 -0.02 0.35 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.15 4.00 7.47 -2.91 -0.02 3.98 16 39 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.14 3.53 3.94 -44.20 -0.17 3.35 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.06 2.18 7.70 -2.39 -0.02 2.16 16 44 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 45 H 0.06 3.25 6.44 -2.39 -0.02 3.23 16 46 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.00 0.09 7.81 -2.39 -0.02 0.07 16 48 H 0.03 1.79 7.19 -2.39 -0.02 1.77 16 49 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 50 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 52 H 0.12 -0.15 6.88 -2.39 -0.02 -0.16 16 Total: -1.00 -81.58 396.75 3.85 -77.73 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.74 Total: 14.06 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 7.19 Total: 16.92 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -6.05 Total: -132.72 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.06 Total: -25.29 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -81.58 3.85 -77.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049461974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.496 kcal (2) G-P(sol) polarization free energy of solvation -81.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds