Wall clock time and date at job start Wed Apr 1 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46826 * 2 1 4 4 C 1.53004 * 109.47105 * 120.00066 * 2 1 3 5 5 C 1.50695 * 109.46888 * 174.99766 * 4 2 1 6 6 N 1.30853 * 125.42070 * 304.97802 * 5 4 2 7 7 C 1.33324 * 109.68490 * 179.78103 * 6 5 4 8 8 C 1.36658 * 107.78723 * 0.37985 * 7 6 5 9 9 C 1.46767 * 126.84594 * 179.89241 * 8 7 6 10 10 O 1.21679 * 120.00140 * 318.26995 * 9 8 7 11 11 N 1.34775 * 119.99747 * 138.27090 * 9 8 7 12 12 C 1.46640 * 120.19379 * 356.34536 * 11 9 8 13 13 C 1.53459 * 106.81195 * 232.56661 * 12 11 9 14 14 C 1.52730 * 108.44453 * 300.43208 * 13 12 11 15 15 C 1.53011 * 110.80742 * 63.76315 * 14 13 12 16 16 H 1.09000 * 111.37991 * 69.73441 * 15 14 13 17 17 C 1.45126 * 119.57322 * 174.58646 * 11 9 8 18 18 H 1.09000 * 110.60906 * 11.49471 * 17 11 9 19 19 C 1.56721 * 112.63548 * 248.00946 * 17 11 9 20 20 C 1.54565 * 102.71834 * 203.83720 * 19 17 11 21 21 N 1.47120 * 107.25336 * 21.59904 * 20 19 17 22 22 C 1.36939 * 125.76899 * 182.59492 * 21 20 19 23 23 H 1.07993 * 119.99964 * 180.02562 * 22 21 20 24 24 C 1.38818 * 119.99557 * 359.97438 * 22 21 20 25 25 N 1.31610 * 120.00209 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99523 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47050 * 90.00691 * 26 24 22 28 28 H 1.48503 * 109.47347 * 210.00034 * 26 24 22 29 29 H 1.48503 * 109.47555 * 330.00662 * 26 24 22 30 30 N 1.34499 * 125.41825 * 124.99950 * 5 4 2 31 31 H 0.97006 * 126.46867 * 359.95730 * 30 5 4 32 32 H 1.09001 * 109.46913 * 299.99694 * 1 2 3 33 33 H 1.08998 * 109.47364 * 60.00096 * 1 2 3 34 34 H 1.09005 * 109.47084 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.46703 * 239.99996 * 2 1 3 36 36 H 1.09001 * 109.47124 * 60.00435 * 3 2 1 37 37 H 1.09004 * 109.46890 * 179.97438 * 3 2 1 38 38 H 1.08998 * 109.47070 * 300.00084 * 3 2 1 39 39 H 1.08997 * 109.46793 * 54.99863 * 4 2 1 40 40 H 1.08996 * 109.47049 * 295.00121 * 4 2 1 41 41 H 1.08001 * 126.10697 * 180.26902 * 7 6 5 42 42 H 1.08999 * 111.45866 * 112.59307 * 12 11 9 43 43 H 1.09005 * 108.96863 * 351.16453 * 12 11 9 44 44 H 1.09002 * 109.64425 * 180.74241 * 13 12 11 45 45 H 1.09000 * 109.64319 * 60.11749 * 13 12 11 46 46 H 1.09003 * 109.21151 * 184.10511 * 14 13 12 47 47 H 1.08997 * 109.20863 * 303.46928 * 14 13 12 48 48 H 1.09009 * 110.74226 * 85.48459 * 19 17 11 49 49 H 1.08993 * 110.79350 * 322.21973 * 19 17 11 50 50 H 1.08997 * 109.88783 * 262.18259 * 20 19 17 51 51 H 1.09002 * 109.88132 * 141.00577 * 20 19 17 52 52 H 0.97003 * 120.00236 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5419 -0.8294 1.1888 6 7 4.2252 -1.3602 0.2071 7 6 5.5289 -1.2865 0.4761 8 6 5.6704 -0.6848 1.6949 9 6 6.9286 -0.3970 2.3936 10 8 7.8232 -1.2218 2.4003 11 7 7.0931 0.7808 3.0277 12 6 6.0503 1.8092 2.9553 13 6 6.7337 3.1024 2.4909 14 6 7.8156 3.4683 3.5050 15 6 8.9078 2.3975 3.5447 16 1 9.5001 2.3999 2.6297 17 6 8.2913 1.0098 3.8138 18 1 9.0295 0.2307 3.6239 19 6 7.9960 1.1036 5.3501 20 6 9.1932 1.9271 5.8770 21 7 9.7458 2.6731 4.7358 22 6 10.8480 3.4850 4.7683 23 1 11.1731 3.9905 3.8711 24 6 11.5470 3.6590 5.9551 25 7 11.1505 3.0434 7.0486 26 14 13.0510 4.7660 5.9993 27 1 12.6354 6.1528 6.3304 28 1 13.9980 4.2734 7.0317 29 1 13.7152 4.7520 4.6712 30 7 4.3933 -0.3961 2.1356 31 1 4.1556 0.0376 2.9700 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6766 1.9563 -0.8900 39 1 1.6054 -1.7198 1.2951 40 1 1.7517 -0.1584 2.1370 41 1 6.3301 -1.6409 -0.1556 42 1 5.5787 1.9679 3.9251 43 1 5.3014 1.5037 2.2245 44 1 5.9986 3.9052 2.4336 45 1 7.1870 2.9461 1.5120 46 1 8.2600 4.4238 3.2264 47 1 7.3651 3.5570 4.4936 48 1 7.9798 0.1115 5.8014 49 1 7.0567 1.6256 5.5324 50 1 9.9515 1.2592 6.2856 51 1 8.8553 2.6222 6.6457 52 1 11.6391 3.1647 7.8778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049476560.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:32 Heat of formation + Delta-G solvation = 43.338536 kcal Electronic energy + Delta-G solvation = -31675.136697 eV Core-core repulsion = 27675.887879 eV Total energy + Delta-G solvation = -3999.248818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.53051 -40.14888 -37.94307 -36.69326 -35.42582 -33.04298 -32.41660 -32.17872 -30.83906 -29.06249 -28.37192 -27.52291 -27.23112 -24.93637 -24.34887 -22.73913 -22.14948 -21.51671 -20.94101 -20.08465 -19.68717 -18.72646 -17.83547 -16.95359 -16.76717 -16.03989 -15.61981 -15.12889 -14.97012 -14.79982 -14.51134 -14.30699 -14.19608 -13.90087 -13.83235 -13.71500 -13.40184 -13.01124 -12.78600 -12.66194 -12.56516 -12.30740 -12.16526 -12.00554 -11.50886 -11.43175 -11.32183 -11.13491 -11.05588 -11.04656 -10.85153 -10.70655 -10.63187 -10.48829 -10.22844 -10.17873 -10.11027 -9.81226 -9.71569 -9.65930 -8.70526 -8.64338 -8.36341 -6.90971 -5.75136 -3.09359 1.28967 2.44902 2.72424 2.92608 3.26798 3.37967 3.43552 3.45301 4.01359 4.35814 4.44354 4.45328 4.53397 4.71545 4.77859 4.91039 5.00332 5.09571 5.17858 5.19869 5.24784 5.27512 5.32858 5.35136 5.38634 5.49139 5.50670 5.53645 5.58559 5.60171 5.69004 5.77318 5.78054 5.87797 5.92288 6.01268 6.01747 6.10701 6.22547 6.27174 6.38778 6.39874 6.50119 6.64341 6.86042 6.96409 6.99828 7.41611 7.50230 7.55469 7.74725 7.77523 8.13114 8.20092 9.16503 9.76095 10.41516 11.36204 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002449 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.542838 B =11428.811872 C =11909.605029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.033 4.033 5 C 0.234 3.766 6 N -0.488 5.488 7 C 0.055 3.945 8 C -0.072 4.072 9 C 0.589 3.411 10 O -0.522 6.522 11 N -0.585 5.585 12 C 0.099 3.901 13 C -0.130 4.130 14 C -0.129 4.129 15 C 0.157 3.843 16 H 0.060 0.940 17 C 0.126 3.874 18 H 0.106 0.894 19 C -0.151 4.151 20 C 0.181 3.819 21 N -0.597 5.597 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 N -0.550 5.550 31 H 0.422 0.578 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.180 0.820 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.052 0.948 51 H 0.042 0.958 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.450 -4.275 -10.897 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.072 4.072 5 C -0.029 4.029 6 N -0.208 5.208 7 C -0.097 4.097 8 C -0.188 4.188 9 C 0.375 3.625 10 O -0.397 6.397 11 N -0.316 5.316 12 C -0.024 4.024 13 C -0.169 4.169 14 C -0.169 4.169 15 C 0.048 3.952 16 H 0.078 0.922 17 C 0.022 3.978 18 H 0.124 0.876 19 C -0.190 4.190 20 C 0.056 3.944 21 N -0.321 5.321 22 C -0.355 4.355 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.569 5.569 26 Si 0.743 3.257 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 N -0.156 5.156 31 H 0.261 0.739 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.197 0.803 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.060 0.940 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.039 -4.988 -11.410 25.314 hybrid contribution 1.046 1.278 1.395 2.162 sum -20.993 -3.710 -10.014 23.553 Atomic orbital electron populations 1.21845 0.94640 1.01973 1.02039 1.21063 0.95531 0.96329 0.97846 1.21863 1.01231 0.95659 1.01797 1.20217 0.84503 1.02715 0.99791 1.23310 0.94615 0.98844 0.86152 1.70102 1.03745 1.21090 1.25869 1.22553 0.93864 0.99450 0.93870 1.21098 0.84626 1.12690 1.00434 1.17022 0.85289 0.81814 0.78393 1.90860 1.42085 1.46714 1.60085 1.47471 1.20455 1.14673 1.48983 1.21960 0.90289 0.88964 1.01159 1.21907 0.98918 0.95818 1.00274 1.22126 0.96092 1.00563 0.98165 1.21303 0.91206 0.90543 0.92144 0.92215 1.22201 0.85505 0.99632 0.90500 0.87645 1.23532 1.00571 1.00511 0.94408 1.21169 0.90665 0.93066 0.89495 1.44687 1.30080 1.53754 1.03607 1.19032 1.01581 1.19414 0.95459 0.90389 1.24799 0.99449 1.00390 0.95700 1.69944 1.41160 1.46012 0.99755 0.86115 0.82386 0.79983 0.77239 1.21649 1.21670 1.20657 1.43500 1.05931 1.46624 1.19533 0.73870 0.92655 0.92288 0.92428 0.89539 0.92834 0.92738 0.92413 0.88848 0.90225 0.80295 0.91071 0.90555 0.91366 0.91600 0.91973 0.91876 0.92079 0.92482 0.92939 0.93980 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.09 -0.54 2.89 -90.61 -0.26 -0.80 16 3 C -0.15 -0.95 9.01 37.16 0.33 -0.62 16 4 C -0.03 -0.20 5.32 -27.88 -0.15 -0.35 16 5 C 0.23 2.19 6.38 -155.62 -0.99 1.20 16 6 N -0.49 -5.84 11.09 -10.58 -0.12 -5.96 16 7 C 0.06 0.71 11.84 -17.47 -0.21 0.50 16 8 C -0.07 -0.92 5.82 -82.14 -0.48 -1.39 16 9 C 0.59 9.18 7.57 -12.81 -0.10 9.08 16 10 O -0.52 -10.13 16.43 5.21 0.09 -10.04 16 11 N -0.58 -8.63 2.75 -165.20 -0.45 -9.08 16 12 C 0.10 1.13 5.39 -3.73 -0.02 1.11 16 13 C -0.13 -1.63 6.08 -26.63 -0.16 -1.80 16 14 C -0.13 -2.17 5.10 -26.86 -0.14 -2.30 16 15 C 0.16 3.11 3.54 -66.35 -0.23 2.87 16 16 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 17 C 0.13 2.29 3.19 -66.03 -0.21 2.08 16 18 H 0.11 2.19 6.97 -51.93 -0.36 1.83 16 19 C -0.15 -2.78 6.16 -23.90 -0.15 -2.93 16 20 C 0.18 4.27 5.20 -2.88 -0.01 4.25 16 21 N -0.60 -14.61 2.92 -162.19 -0.47 -15.08 16 22 C -0.23 -6.14 10.29 -15.06 -0.15 -6.30 16 23 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 25 N -0.92 -26.61 10.33 55.49 0.57 -26.04 16 26 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 N -0.55 -5.14 4.74 -7.02 -0.03 -5.17 16 31 H 0.42 2.94 7.98 -40.82 -0.33 2.62 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.45 7.38 -51.93 -0.38 0.06 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 43 H 0.08 0.73 5.02 -51.93 -0.26 0.47 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 1.12 7.12 -51.93 -0.37 0.75 16 48 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 49 H 0.06 0.95 6.83 -51.93 -0.35 0.59 16 50 H 0.05 1.40 7.30 -51.93 -0.38 1.02 16 51 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 52 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -32.19 401.29 -10.76 -42.96 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.68 Total: 1.51 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.69 Total: 3.98 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.50 Total: -61.33 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.19 -10.76 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049476560.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.294 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds