Wall clock time and date at job start Wed Apr 1 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46826 * 2 1 4 4 C 1.53004 * 109.47105 * 120.00066 * 2 1 3 5 5 C 1.50695 * 109.46888 * 174.99766 * 4 2 1 6 6 N 1.30853 * 125.42070 * 304.97802 * 5 4 2 7 7 C 1.33324 * 109.68490 * 179.78103 * 6 5 4 8 8 C 1.36658 * 107.78723 * 0.37985 * 7 6 5 9 9 C 1.46767 * 126.84594 * 179.89241 * 8 7 6 10 10 O 1.21679 * 120.00140 * 318.26995 * 9 8 7 11 11 N 1.34775 * 119.99747 * 138.27090 * 9 8 7 12 12 C 1.46640 * 120.19379 * 356.34536 * 11 9 8 13 13 C 1.53459 * 106.81195 * 232.56661 * 12 11 9 14 14 C 1.52730 * 108.44453 * 300.43208 * 13 12 11 15 15 C 1.53011 * 110.80742 * 63.76315 * 14 13 12 16 16 H 1.09000 * 111.37991 * 69.73441 * 15 14 13 17 17 C 1.45126 * 119.57322 * 174.58646 * 11 9 8 18 18 H 1.09000 * 110.60906 * 11.49471 * 17 11 9 19 19 C 1.56721 * 112.63548 * 248.00946 * 17 11 9 20 20 C 1.54565 * 102.71834 * 203.83720 * 19 17 11 21 21 N 1.47120 * 107.25336 * 21.59904 * 20 19 17 22 22 C 1.36939 * 125.76899 * 182.59492 * 21 20 19 23 23 H 1.07993 * 119.99964 * 180.02562 * 22 21 20 24 24 C 1.38818 * 119.99557 * 359.97438 * 22 21 20 25 25 N 1.31610 * 120.00209 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99523 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47050 * 90.00691 * 26 24 22 28 28 H 1.48503 * 109.47347 * 210.00034 * 26 24 22 29 29 H 1.48503 * 109.47555 * 330.00662 * 26 24 22 30 30 N 1.34499 * 125.41825 * 124.99950 * 5 4 2 31 31 H 0.97006 * 126.46867 * 359.95730 * 30 5 4 32 32 H 1.09001 * 109.46913 * 299.99694 * 1 2 3 33 33 H 1.08998 * 109.47364 * 60.00096 * 1 2 3 34 34 H 1.09005 * 109.47084 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.46703 * 239.99996 * 2 1 3 36 36 H 1.09001 * 109.47124 * 60.00435 * 3 2 1 37 37 H 1.09004 * 109.46890 * 179.97438 * 3 2 1 38 38 H 1.08998 * 109.47070 * 300.00084 * 3 2 1 39 39 H 1.08997 * 109.46793 * 54.99863 * 4 2 1 40 40 H 1.08996 * 109.47049 * 295.00121 * 4 2 1 41 41 H 1.08001 * 126.10697 * 180.26902 * 7 6 5 42 42 H 1.08999 * 111.45866 * 112.59307 * 12 11 9 43 43 H 1.09005 * 108.96863 * 351.16453 * 12 11 9 44 44 H 1.09002 * 109.64425 * 180.74241 * 13 12 11 45 45 H 1.09000 * 109.64319 * 60.11749 * 13 12 11 46 46 H 1.09003 * 109.21151 * 184.10511 * 14 13 12 47 47 H 1.08997 * 109.20863 * 303.46928 * 14 13 12 48 48 H 1.09009 * 110.74226 * 85.48459 * 19 17 11 49 49 H 1.08993 * 110.79350 * 322.21973 * 19 17 11 50 50 H 1.08997 * 109.88783 * 262.18259 * 20 19 17 51 51 H 1.09002 * 109.88132 * 141.00577 * 20 19 17 52 52 H 0.97003 * 120.00236 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5419 -0.8294 1.1888 6 7 4.2252 -1.3602 0.2071 7 6 5.5289 -1.2865 0.4761 8 6 5.6704 -0.6848 1.6949 9 6 6.9286 -0.3970 2.3936 10 8 7.8232 -1.2218 2.4003 11 7 7.0931 0.7808 3.0277 12 6 6.0503 1.8092 2.9553 13 6 6.7337 3.1024 2.4909 14 6 7.8156 3.4683 3.5050 15 6 8.9078 2.3975 3.5447 16 1 9.5001 2.3999 2.6297 17 6 8.2913 1.0098 3.8138 18 1 9.0295 0.2307 3.6239 19 6 7.9960 1.1036 5.3501 20 6 9.1932 1.9271 5.8770 21 7 9.7458 2.6731 4.7358 22 6 10.8480 3.4850 4.7683 23 1 11.1731 3.9905 3.8711 24 6 11.5470 3.6590 5.9551 25 7 11.1505 3.0434 7.0486 26 14 13.0510 4.7660 5.9993 27 1 12.6354 6.1528 6.3304 28 1 13.9980 4.2734 7.0317 29 1 13.7152 4.7520 4.6712 30 7 4.3933 -0.3961 2.1356 31 1 4.1556 0.0376 2.9700 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6766 1.9563 -0.8900 39 1 1.6054 -1.7198 1.2951 40 1 1.7517 -0.1584 2.1370 41 1 6.3301 -1.6409 -0.1556 42 1 5.5787 1.9679 3.9251 43 1 5.3014 1.5037 2.2245 44 1 5.9986 3.9052 2.4336 45 1 7.1870 2.9461 1.5120 46 1 8.2600 4.4238 3.2264 47 1 7.3651 3.5570 4.4936 48 1 7.9798 0.1115 5.8014 49 1 7.0567 1.6256 5.5324 50 1 9.9515 1.2592 6.2856 51 1 8.8553 2.6222 6.6457 52 1 11.6391 3.1647 7.8778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049476560.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:30 Heat of formation + Delta-G solvation = 24.347496 kcal Electronic energy + Delta-G solvation = -31675.960211 eV Core-core repulsion = 27675.887879 eV Total energy + Delta-G solvation = -4000.072331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.41181 -41.47207 -39.39478 -37.18858 -36.91865 -34.36071 -33.83185 -33.54121 -31.74090 -30.76454 -29.86831 -28.08983 -27.88157 -26.44399 -25.95321 -23.92291 -23.35926 -22.29168 -21.99300 -21.74096 -20.49739 -19.89618 -19.08731 -18.74403 -17.84114 -17.01080 -16.82012 -16.67491 -16.14828 -15.98154 -15.69291 -15.42711 -15.11558 -15.11423 -14.90131 -14.73923 -14.50190 -14.31908 -14.13848 -13.77894 -13.59035 -13.30891 -13.14970 -13.00851 -12.84635 -12.71044 -12.66933 -12.41767 -12.34483 -12.11068 -12.01596 -11.96421 -11.77311 -11.74728 -11.58303 -11.54456 -11.38297 -11.26711 -11.06297 -11.01869 -10.72912 -9.82403 -9.46987 -8.91719 -7.86189 -5.21732 0.32729 1.44206 1.46187 1.50348 1.54521 1.65852 1.93928 2.24246 2.48097 3.26164 3.32206 3.48000 3.52303 3.73750 3.85029 3.91643 3.96319 3.97555 4.05675 4.09781 4.14094 4.30021 4.34777 4.40223 4.45355 4.50703 4.60131 4.63773 4.70434 4.76692 4.78232 4.86353 4.89841 4.91897 4.96977 4.99291 5.10816 5.12274 5.16678 5.28821 5.35998 5.38109 5.43506 5.48578 5.53295 5.55630 5.60757 5.61778 5.71787 6.16164 6.20862 6.29732 6.88925 6.92433 7.07699 7.73289 8.38254 9.23778 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002449 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.542838 B =11428.811872 C =11909.605029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.034 4.034 5 C 0.256 3.744 6 N -0.514 5.514 7 C 0.049 3.951 8 C -0.085 4.085 9 C 0.592 3.408 10 O -0.570 6.570 11 N -0.580 5.580 12 C 0.098 3.902 13 C -0.121 4.121 14 C -0.117 4.117 15 C 0.151 3.849 16 H 0.045 0.955 17 C 0.142 3.858 18 H 0.072 0.928 19 C -0.131 4.131 20 C 0.191 3.809 21 N -0.617 5.617 22 C -0.235 4.235 23 H 0.080 0.920 24 C -0.065 4.065 25 N -0.950 5.950 26 Si 0.976 3.024 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.272 1.272 30 N -0.536 5.536 31 H 0.436 0.564 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.177 0.823 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.010 0.990 51 H 0.015 0.985 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.124 -3.393 -11.664 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.204 4.204 4 C -0.073 4.073 5 C -0.008 4.008 6 N -0.234 5.234 7 C -0.104 4.104 8 C -0.201 4.201 9 C 0.380 3.620 10 O -0.448 6.448 11 N -0.310 5.310 12 C -0.023 4.023 13 C -0.159 4.159 14 C -0.157 4.157 15 C 0.044 3.956 16 H 0.063 0.937 17 C 0.037 3.963 18 H 0.090 0.910 19 C -0.171 4.171 20 C 0.066 3.934 21 N -0.342 5.342 22 C -0.364 4.364 23 H 0.098 0.902 24 C -0.258 4.258 25 N -0.599 5.599 26 Si 0.805 3.195 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.197 1.197 30 N -0.144 5.144 31 H 0.279 0.721 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.194 0.806 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.028 0.972 51 H 0.033 0.967 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.771 -4.077 -12.205 28.805 hybrid contribution 2.129 0.976 1.531 2.798 sum -23.642 -3.100 -10.674 26.124 Atomic orbital electron populations 1.21808 0.93241 1.02454 1.02605 1.21004 0.96587 0.95881 0.96992 1.21857 0.99968 0.96001 1.02585 1.20470 0.81827 1.03956 1.01051 1.23967 0.95810 0.96175 0.84884 1.70142 1.03393 1.22531 1.27323 1.22679 0.94498 0.99142 0.94081 1.20506 0.84631 1.14525 1.00476 1.17337 0.85730 0.81234 0.77704 1.90837 1.44004 1.48217 1.61750 1.47432 1.19965 1.15443 1.48154 1.22267 0.89572 0.87128 1.03369 1.21859 0.98196 0.97513 0.98373 1.21892 0.96083 0.98411 0.99329 1.21500 0.91631 0.92654 0.89840 0.93706 1.21680 0.86454 0.97417 0.90788 0.90961 1.23328 0.99379 1.00220 0.94124 1.20859 0.91363 0.92096 0.89091 1.44928 1.30337 1.53508 1.05422 1.19370 1.02346 1.19247 0.95470 0.90207 1.25603 1.02383 1.02240 0.95562 1.70156 1.42238 1.47550 0.99978 0.85109 0.78980 0.78220 0.77199 1.21038 1.22280 1.19685 1.43374 1.04481 1.46415 1.20104 0.72139 0.91433 0.92410 0.92034 0.91626 0.91242 0.94551 0.92539 0.87767 0.87162 0.80553 0.88539 0.87991 0.87791 0.92038 0.93284 0.92439 0.91311 0.89510 0.97173 0.96691 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.19 71.98 0.66 -0.18 16 2 C -0.09 -0.78 2.89 -10.79 -0.03 -0.81 16 3 C -0.15 -1.42 9.01 71.98 0.65 -0.77 16 4 C -0.03 -0.28 5.32 29.85 0.16 -0.12 16 5 C 0.26 3.99 6.38 138.20 0.88 4.87 16 6 N -0.51 -11.40 11.09 -187.40 -2.08 -13.48 16 7 C 0.05 1.21 11.84 84.10 1.00 2.21 16 8 C -0.09 -2.01 5.82 40.01 0.23 -1.78 16 9 C 0.59 18.03 7.57 86.47 0.65 18.69 16 10 O -0.57 -22.63 16.43 -4.28 -0.07 -22.70 16 11 N -0.58 -16.24 2.75 -794.80 -2.19 -18.42 16 12 C 0.10 1.86 5.39 86.51 0.47 2.33 16 13 C -0.12 -2.62 6.08 30.66 0.19 -2.44 16 14 C -0.12 -3.77 5.10 30.51 0.16 -3.61 16 15 C 0.15 6.06 3.54 45.08 0.16 6.22 16 16 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 17 C 0.14 5.20 3.19 46.96 0.15 5.35 16 18 H 0.07 3.15 6.97 -2.39 -0.02 3.13 16 19 C -0.13 -4.80 6.16 32.43 0.20 -4.60 16 20 C 0.19 9.38 5.20 86.79 0.45 9.83 16 21 N -0.62 -31.23 2.92 -667.06 -1.94 -33.18 16 22 C -0.24 -13.13 10.29 84.03 0.86 -12.27 16 23 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 24 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 25 N -0.95 -57.13 10.33 21.65 0.22 -56.90 16 26 Si 0.98 46.07 29.55 68.60 2.03 48.09 16 27 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 30 N -0.54 -8.19 4.74 -176.12 -0.84 -9.03 16 31 H 0.44 4.04 7.98 -92.70 -0.74 3.30 16 32 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 35 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16 36 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 37 H 0.04 0.48 7.38 -2.38 -0.02 0.47 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.11 0.28 8.14 -2.39 -0.02 0.27 16 41 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.10 1.45 7.53 -2.39 -0.02 1.44 16 43 H 0.10 1.49 5.02 -2.38 -0.01 1.48 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 1.93 7.12 -2.39 -0.02 1.91 16 48 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 49 H 0.09 2.67 6.83 -2.39 -0.02 2.65 16 50 H 0.01 0.57 7.30 -2.39 -0.02 0.55 16 51 H 0.01 0.80 7.60 -2.39 -0.02 0.78 16 52 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -75.25 401.29 2.62 -72.63 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.18 Total: 13.29 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 7.30 Total: 19.70 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -6.82 Total: -131.02 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.07 Total: -22.70 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.25 2.62 -72.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049476560.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.980 kcal (2) G-P(sol) polarization free energy of solvation -75.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds