Wall clock time and date at job start Wed Apr 1 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47416 * 2 1 4 4 C 1.52999 * 109.47146 * 120.00241 * 2 1 3 5 5 C 1.50694 * 109.47203 * 174.99603 * 4 2 1 6 6 N 1.30862 * 125.42157 * 304.97925 * 5 4 2 7 7 C 1.33319 * 109.68478 * 179.78140 * 6 5 4 8 8 C 1.36661 * 107.78737 * 0.38165 * 7 6 5 9 9 C 1.46768 * 126.84391 * 179.89813 * 8 7 6 10 10 O 1.21679 * 120.00023 * 27.16321 * 9 8 7 11 11 N 1.34773 * 119.99650 * 207.16416 * 9 8 7 12 12 C 1.47845 * 122.23095 * 358.89286 * 11 9 8 13 13 C 1.52715 * 111.06616 * 127.54240 * 12 11 9 14 14 C 1.53868 * 111.52654 * 48.52143 * 13 12 11 15 15 C 1.51081 * 107.34105 * 303.07876 * 14 13 12 16 16 H 1.09004 * 108.73263 * 308.54113 * 15 14 13 17 17 C 1.45727 * 122.22324 * 178.91342 * 11 9 8 18 18 H 1.09002 * 111.07196 * 119.45583 * 17 11 9 19 19 C 1.53426 * 116.37446 * 350.08035 * 17 11 9 20 20 C 1.55473 * 101.67585 * 207.28160 * 19 17 11 21 21 N 1.45023 * 119.19498 * 183.89498 * 15 14 13 22 22 C 1.36940 * 126.55410 * 28.78856 * 21 15 14 23 23 H 1.07996 * 120.00768 * 0.02562 * 22 21 15 24 24 C 1.38815 * 119.99581 * 180.02562 * 22 21 15 25 25 N 1.31625 * 120.00018 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99879 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47333 * 59.99842 * 26 24 22 28 28 H 1.48501 * 109.47042 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46995 * 299.99855 * 26 24 22 30 30 N 1.34499 * 125.41868 * 124.99968 * 5 4 2 31 31 H 0.96999 * 126.47206 * 0.02562 * 30 5 4 32 32 H 1.09008 * 109.47065 * 299.99758 * 1 2 3 33 33 H 1.09004 * 109.47398 * 59.99940 * 1 2 3 34 34 H 1.09001 * 109.47558 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46808 * 240.00273 * 2 1 3 36 36 H 1.09008 * 109.46806 * 60.00083 * 3 2 1 37 37 H 1.08995 * 109.47287 * 179.97438 * 3 2 1 38 38 H 1.09001 * 109.47378 * 300.00309 * 3 2 1 39 39 H 1.09008 * 109.47080 * 54.99570 * 4 2 1 40 40 H 1.09003 * 109.47343 * 295.00086 * 4 2 1 41 41 H 1.08001 * 126.10711 * 180.26739 * 7 6 5 42 42 H 1.09000 * 109.16296 * 7.12924 * 12 11 9 43 43 H 1.09003 * 109.11519 * 247.91610 * 12 11 9 44 44 H 1.09000 * 109.06748 * 287.99695 * 13 12 11 45 45 H 1.09001 * 109.01682 * 169.01524 * 13 12 11 46 46 H 1.09005 * 109.88391 * 183.61705 * 14 13 12 47 47 H 1.09003 * 109.94570 * 62.57435 * 14 13 12 48 48 H 1.09000 * 110.98869 * 325.38095 * 19 17 11 49 49 H 1.09003 * 110.98717 * 89.18898 * 19 17 11 50 50 H 1.08996 * 109.95907 * 141.97635 * 20 19 17 51 51 H 1.08997 * 109.96418 * 263.21830 * 20 19 17 52 52 H 0.97002 * 119.99529 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.8295 1.1888 6 7 4.2251 -1.3603 0.2071 7 6 5.5288 -1.2867 0.4761 8 6 5.6703 -0.6851 1.6949 9 6 6.9285 -0.3973 2.3936 10 8 7.9519 -0.2260 1.7581 11 7 6.9503 -0.3228 3.7391 12 6 5.7323 -0.4988 4.5584 13 6 5.9474 -1.5529 5.6423 14 6 7.2578 -1.3121 6.4119 15 6 8.3793 -1.3027 5.3997 16 1 8.3057 -2.2014 4.7873 17 6 8.1761 -0.0630 4.4832 18 1 8.0933 0.8538 5.0669 19 6 9.4832 -0.1105 3.6813 20 6 10.5103 -0.5116 4.7774 21 7 9.7483 -1.1785 5.8619 22 6 10.2429 -1.5968 7.0684 23 1 9.5895 -2.0736 7.7840 24 6 11.5843 -1.4078 7.3717 25 7 12.3808 -0.8271 6.4994 26 14 12.2592 -1.9790 9.0171 27 1 12.0644 -3.4452 9.1501 28 1 13.7084 -1.6637 9.0941 29 1 11.5417 -1.2827 10.1151 30 7 4.3932 -0.3963 2.1356 31 1 4.1555 0.0366 2.9704 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8932 -0.5138 -0.8900 36 1 1.6767 1.9563 0.8901 37 1 3.1300 1.4424 0.0005 38 1 1.6767 1.9563 -0.8899 39 1 1.6053 -1.7199 1.2951 40 1 1.7516 -0.1584 2.1370 41 1 6.3300 -1.6411 -0.1556 42 1 4.9099 -0.8104 3.9145 43 1 5.4781 0.4511 5.0287 44 1 5.9829 -2.5386 5.1783 45 1 5.1121 -1.5187 6.3417 46 1 7.4164 -2.1134 7.1337 47 1 7.2154 -0.3525 6.9272 48 1 9.4333 -0.8666 2.8977 49 1 9.7205 0.8677 3.2632 50 1 11.2471 -1.1996 4.3630 51 1 11.0077 0.3777 5.1646 52 1 13.3182 -0.6955 6.7112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049476563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:56 Heat of formation + Delta-G solvation = 59.782515 kcal Electronic energy + Delta-G solvation = -31642.751412 eV Core-core repulsion = 27644.215658 eV Total energy + Delta-G solvation = -3998.535754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.53433 -40.17773 -37.74906 -36.69377 -35.64337 -33.13260 -32.69625 -32.07417 -30.80883 -29.00698 -28.35132 -27.52754 -27.21160 -24.89922 -24.51905 -22.44397 -22.03527 -21.41439 -21.14832 -20.09505 -19.71372 -19.36310 -17.56576 -16.70206 -16.32104 -15.94467 -15.61607 -15.36925 -14.96615 -14.70765 -14.61131 -14.27292 -14.20163 -14.03208 -13.81867 -13.65780 -13.33501 -13.02448 -12.77331 -12.66804 -12.52280 -12.38922 -12.29506 -11.93686 -11.64774 -11.47335 -11.32796 -11.23485 -11.06505 -10.88427 -10.80862 -10.65814 -10.58703 -10.32281 -10.21817 -10.12710 -10.06977 -9.90487 -9.64564 -9.23445 -8.65765 -8.58950 -8.32662 -6.85320 -5.71596 -3.06287 1.27162 2.53896 2.72643 2.97201 3.35535 3.39105 3.43457 3.45157 4.02287 4.33454 4.39303 4.47193 4.53118 4.61566 4.73693 4.89163 4.90745 5.02323 5.15796 5.19172 5.26553 5.27405 5.31672 5.32919 5.34476 5.49346 5.50978 5.54092 5.59759 5.66375 5.69048 5.76865 5.79233 5.88388 5.92027 5.99242 6.01059 6.15872 6.21437 6.30176 6.42933 6.49264 6.65092 6.71042 6.84417 6.96525 7.10938 7.48620 7.56639 7.64709 7.77384 7.82025 8.22507 8.25428 9.17355 9.81124 10.49053 11.40250 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.002406 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.530737 B =11634.893909 C =12261.540636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.033 4.033 5 C 0.232 3.768 6 N -0.489 5.489 7 C 0.061 3.939 8 C -0.076 4.076 9 C 0.593 3.407 10 O -0.513 6.513 11 N -0.596 5.596 12 C 0.096 3.904 13 C -0.128 4.128 14 C -0.115 4.115 15 C 0.158 3.842 16 H 0.018 0.982 17 C 0.117 3.883 18 H 0.082 0.918 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.592 5.592 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.911 3.089 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 N -0.554 5.554 31 H 0.422 0.578 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.182 0.818 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.062 0.938 50 H 0.041 0.959 51 H 0.057 0.943 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.619 2.990 -8.739 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.072 4.072 5 C -0.031 4.031 6 N -0.209 5.209 7 C -0.092 4.092 8 C -0.191 4.191 9 C 0.380 3.620 10 O -0.389 6.389 11 N -0.329 5.329 12 C -0.027 4.027 13 C -0.167 4.167 14 C -0.154 4.154 15 C 0.049 3.951 16 H 0.036 0.964 17 C 0.013 3.987 18 H 0.100 0.900 19 C -0.168 4.168 20 C 0.048 3.952 21 N -0.317 5.317 22 C -0.356 4.356 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.566 5.566 26 Si 0.741 3.259 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 N -0.164 5.164 31 H 0.266 0.734 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.199 0.801 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.081 0.919 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.107 2.742 -9.682 26.123 hybrid contribution 0.654 0.244 2.158 2.269 sum -23.453 2.986 -7.523 24.810 Atomic orbital electron populations 1.21844 0.94622 1.02001 1.02005 1.21065 0.95533 0.96289 0.97932 1.21862 1.01265 0.95725 1.01707 1.20218 0.84558 1.02722 0.99724 1.23359 0.94658 0.98527 0.86600 1.70114 1.03833 1.21389 1.25569 1.22600 0.93782 0.99533 0.93256 1.21322 0.84411 1.13631 0.99764 1.16884 0.86371 0.77491 0.81233 1.90869 1.32403 1.49717 1.65874 1.47953 1.10139 1.70136 1.04659 1.22057 0.86982 0.99950 0.93717 1.21874 0.99071 0.98721 0.96988 1.21426 0.93151 1.02385 0.98410 1.20772 0.86780 0.94410 0.93146 0.96421 1.22479 0.83485 0.99302 0.93411 0.90027 1.22974 0.93169 1.02212 0.98449 1.21758 0.91098 0.97170 0.85221 1.44077 1.02069 1.69676 1.15863 1.18923 0.92878 1.32520 0.91327 0.90440 1.24816 0.96251 1.00952 0.98310 1.69937 1.04832 1.47570 1.34248 0.86222 0.78011 0.78342 0.83289 1.21199 1.21592 1.21203 1.43978 1.06187 1.46883 1.19380 0.73393 0.92678 0.92309 0.92377 0.89493 0.92934 0.92750 0.92416 0.88740 0.90301 0.80118 0.90751 0.91205 0.91626 0.90793 0.91246 0.91684 0.89941 0.91904 0.94118 0.92469 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.19 37.16 0.34 -0.35 16 2 C -0.09 -0.57 2.89 -90.62 -0.26 -0.83 16 3 C -0.15 -1.02 9.01 37.15 0.33 -0.68 16 4 C -0.03 -0.21 5.32 -27.89 -0.15 -0.35 16 5 C 0.23 2.25 6.38 -155.61 -0.99 1.25 16 6 N -0.49 -6.08 11.09 -10.58 -0.12 -6.20 16 7 C 0.06 0.82 11.76 -17.48 -0.21 0.61 16 8 C -0.08 -1.00 6.47 -82.14 -0.53 -1.53 16 9 C 0.59 9.53 7.62 -12.81 -0.10 9.43 16 10 O -0.51 -9.94 13.86 5.21 0.07 -9.87 16 11 N -0.60 -9.02 2.91 -165.49 -0.48 -9.50 16 12 C 0.10 1.05 5.69 -3.45 -0.02 1.03 16 13 C -0.13 -1.52 5.93 -26.43 -0.16 -1.68 16 14 C -0.12 -1.88 5.45 -27.24 -0.15 -2.03 16 15 C 0.16 3.23 2.57 -68.36 -0.18 3.05 16 16 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 17 C 0.12 2.16 3.33 -66.80 -0.22 1.94 16 18 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 19 C -0.13 -2.72 4.99 -25.20 -0.13 -2.84 16 20 C 0.17 4.30 5.47 -1.69 -0.01 4.29 16 21 N -0.59 -14.97 3.35 -163.28 -0.55 -15.52 16 22 C -0.23 -6.23 9.94 -15.06 -0.15 -6.38 16 23 H 0.08 2.01 7.31 -52.49 -0.38 1.63 16 24 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 25 N -0.92 -27.04 10.46 55.49 0.58 -26.46 16 26 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 30 N -0.55 -5.33 4.93 -7.02 -0.03 -5.36 16 31 H 0.42 2.95 6.43 -40.82 -0.26 2.69 16 32 H 0.05 0.22 8.14 -51.92 -0.42 -0.20 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 36 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 37 H 0.05 0.49 7.38 -51.93 -0.38 0.10 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.18 2.29 8.06 -52.49 -0.42 1.86 16 42 H 0.07 0.66 3.90 -51.93 -0.20 0.45 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 47 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 48 H 0.08 1.82 6.24 -51.93 -0.32 1.49 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 51 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 52 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -32.99 397.23 -10.85 -43.84 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.62 Total: 1.49 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -2.66 Total: 4.67 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.60 Total: -63.04 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.99 -10.85 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049476563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.623 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds