Wall clock time and date at job start Wed Apr 1 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47416 * 2 1 4 4 C 1.52999 * 109.47146 * 120.00241 * 2 1 3 5 5 C 1.50694 * 109.47203 * 174.99603 * 4 2 1 6 6 N 1.30862 * 125.42157 * 304.97925 * 5 4 2 7 7 C 1.33319 * 109.68478 * 179.78140 * 6 5 4 8 8 C 1.36661 * 107.78737 * 0.38165 * 7 6 5 9 9 C 1.46768 * 126.84391 * 179.89813 * 8 7 6 10 10 O 1.21679 * 120.00023 * 27.16321 * 9 8 7 11 11 N 1.34773 * 119.99650 * 207.16416 * 9 8 7 12 12 C 1.47845 * 122.23095 * 358.89286 * 11 9 8 13 13 C 1.52715 * 111.06616 * 127.54240 * 12 11 9 14 14 C 1.53868 * 111.52654 * 48.52143 * 13 12 11 15 15 C 1.51081 * 107.34105 * 303.07876 * 14 13 12 16 16 H 1.09004 * 108.73263 * 308.54113 * 15 14 13 17 17 C 1.45727 * 122.22324 * 178.91342 * 11 9 8 18 18 H 1.09002 * 111.07196 * 119.45583 * 17 11 9 19 19 C 1.53426 * 116.37446 * 350.08035 * 17 11 9 20 20 C 1.55473 * 101.67585 * 207.28160 * 19 17 11 21 21 N 1.45023 * 119.19498 * 183.89498 * 15 14 13 22 22 C 1.36940 * 126.55410 * 28.78856 * 21 15 14 23 23 H 1.07996 * 120.00768 * 0.02562 * 22 21 15 24 24 C 1.38815 * 119.99581 * 180.02562 * 22 21 15 25 25 N 1.31625 * 120.00018 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99879 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47333 * 59.99842 * 26 24 22 28 28 H 1.48501 * 109.47042 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46995 * 299.99855 * 26 24 22 30 30 N 1.34499 * 125.41868 * 124.99968 * 5 4 2 31 31 H 0.96999 * 126.47206 * 0.02562 * 30 5 4 32 32 H 1.09008 * 109.47065 * 299.99758 * 1 2 3 33 33 H 1.09004 * 109.47398 * 59.99940 * 1 2 3 34 34 H 1.09001 * 109.47558 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46808 * 240.00273 * 2 1 3 36 36 H 1.09008 * 109.46806 * 60.00083 * 3 2 1 37 37 H 1.08995 * 109.47287 * 179.97438 * 3 2 1 38 38 H 1.09001 * 109.47378 * 300.00309 * 3 2 1 39 39 H 1.09008 * 109.47080 * 54.99570 * 4 2 1 40 40 H 1.09003 * 109.47343 * 295.00086 * 4 2 1 41 41 H 1.08001 * 126.10711 * 180.26739 * 7 6 5 42 42 H 1.09000 * 109.16296 * 7.12924 * 12 11 9 43 43 H 1.09003 * 109.11519 * 247.91610 * 12 11 9 44 44 H 1.09000 * 109.06748 * 287.99695 * 13 12 11 45 45 H 1.09001 * 109.01682 * 169.01524 * 13 12 11 46 46 H 1.09005 * 109.88391 * 183.61705 * 14 13 12 47 47 H 1.09003 * 109.94570 * 62.57435 * 14 13 12 48 48 H 1.09000 * 110.98869 * 325.38095 * 19 17 11 49 49 H 1.09003 * 110.98717 * 89.18898 * 19 17 11 50 50 H 1.08996 * 109.95907 * 141.97635 * 20 19 17 51 51 H 1.08997 * 109.96418 * 263.21830 * 20 19 17 52 52 H 0.97002 * 119.99529 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.8295 1.1888 6 7 4.2251 -1.3603 0.2071 7 6 5.5288 -1.2867 0.4761 8 6 5.6703 -0.6851 1.6949 9 6 6.9285 -0.3973 2.3936 10 8 7.9519 -0.2260 1.7581 11 7 6.9503 -0.3228 3.7391 12 6 5.7323 -0.4988 4.5584 13 6 5.9474 -1.5529 5.6423 14 6 7.2578 -1.3121 6.4119 15 6 8.3793 -1.3027 5.3997 16 1 8.3057 -2.2014 4.7873 17 6 8.1761 -0.0630 4.4832 18 1 8.0933 0.8538 5.0669 19 6 9.4832 -0.1105 3.6813 20 6 10.5103 -0.5116 4.7774 21 7 9.7483 -1.1785 5.8619 22 6 10.2429 -1.5968 7.0684 23 1 9.5895 -2.0736 7.7840 24 6 11.5843 -1.4078 7.3717 25 7 12.3808 -0.8271 6.4994 26 14 12.2592 -1.9790 9.0171 27 1 12.0644 -3.4452 9.1501 28 1 13.7084 -1.6637 9.0941 29 1 11.5417 -1.2827 10.1151 30 7 4.3932 -0.3963 2.1356 31 1 4.1555 0.0366 2.9704 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8932 -0.5138 -0.8900 36 1 1.6767 1.9563 0.8901 37 1 3.1300 1.4424 0.0005 38 1 1.6767 1.9563 -0.8899 39 1 1.6053 -1.7199 1.2951 40 1 1.7516 -0.1584 2.1370 41 1 6.3300 -1.6411 -0.1556 42 1 4.9099 -0.8104 3.9145 43 1 5.4781 0.4511 5.0287 44 1 5.9829 -2.5386 5.1783 45 1 5.1121 -1.5187 6.3417 46 1 7.4164 -2.1134 7.1337 47 1 7.2154 -0.3525 6.9272 48 1 9.4333 -0.8666 2.8977 49 1 9.7205 0.8677 3.2632 50 1 11.2471 -1.1996 4.3630 51 1 11.0077 0.3777 5.1646 52 1 13.3182 -0.6955 6.7112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049476563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:42 Heat of formation + Delta-G solvation = 39.534476 kcal Electronic energy + Delta-G solvation = -31643.629433 eV Core-core repulsion = 27644.215658 eV Total energy + Delta-G solvation = -3999.413774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 18.60 seconds Orbital eigenvalues (eV) -43.45100 -41.53675 -39.20298 -37.24424 -37.09297 -34.45393 -34.15742 -33.50738 -31.76846 -30.71040 -29.79967 -28.10446 -27.91209 -26.45881 -26.11823 -23.68326 -23.13758 -22.69131 -22.00371 -21.57499 -21.10852 -20.20818 -18.86899 -18.25025 -17.41843 -17.21917 -16.93443 -16.58168 -16.20533 -15.90119 -15.81171 -15.50364 -15.35257 -14.97334 -14.93706 -14.81018 -14.45513 -14.34895 -14.17416 -13.93563 -13.48005 -13.34492 -13.20622 -13.02531 -12.95679 -12.73384 -12.69922 -12.38546 -12.19373 -12.06871 -11.95974 -11.85994 -11.78619 -11.76242 -11.65233 -11.56897 -11.51093 -11.22703 -11.07512 -10.80464 -10.60420 -9.79116 -9.46377 -8.93234 -7.85011 -5.22338 0.27503 1.45032 1.48792 1.54966 1.61234 1.66240 1.95440 2.26073 2.49483 3.19299 3.33258 3.34261 3.53460 3.76404 3.83011 3.88468 3.95588 3.98750 4.07535 4.11968 4.15462 4.23887 4.32653 4.38489 4.48388 4.51851 4.53530 4.60525 4.62998 4.74383 4.83169 4.85415 4.89494 4.94558 4.94987 5.04652 5.06770 5.09651 5.13387 5.23756 5.33716 5.34977 5.41073 5.46448 5.50318 5.54503 5.56803 5.58198 5.69770 6.16076 6.22993 6.31172 6.87821 6.99975 7.03814 7.73925 8.43772 9.26516 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.002406 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.530737 B =11634.893909 C =12261.540636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.034 4.034 5 C 0.254 3.746 6 N -0.516 5.516 7 C 0.051 3.949 8 C -0.087 4.087 9 C 0.591 3.409 10 O -0.558 6.558 11 N -0.595 5.595 12 C 0.091 3.909 13 C -0.118 4.118 14 C -0.110 4.110 15 C 0.152 3.848 16 H -0.005 1.005 17 C 0.134 3.866 18 H 0.090 0.910 19 C -0.114 4.114 20 C 0.182 3.818 21 N -0.611 5.611 22 C -0.234 4.234 23 H 0.090 0.910 24 C -0.070 4.070 25 N -0.954 5.954 26 Si 0.980 3.020 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.271 1.271 30 N -0.539 5.539 31 H 0.437 0.563 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.175 0.825 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.118 0.882 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.066 0.934 50 H -0.001 1.001 51 H 0.029 0.971 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.425 3.284 -7.087 30.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.204 4.204 4 C -0.073 4.073 5 C -0.010 4.010 6 N -0.236 5.236 7 C -0.102 4.102 8 C -0.203 4.203 9 C 0.380 3.620 10 O -0.437 6.437 11 N -0.327 5.327 12 C -0.030 4.030 13 C -0.157 4.157 14 C -0.149 4.149 15 C 0.044 3.956 16 H 0.013 0.987 17 C 0.029 3.971 18 H 0.108 0.892 19 C -0.153 4.153 20 C 0.057 3.943 21 N -0.336 5.336 22 C -0.362 4.362 23 H 0.108 0.892 24 C -0.263 4.263 25 N -0.603 5.603 26 Si 0.808 3.192 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.197 1.197 30 N -0.151 5.151 31 H 0.284 0.716 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.192 0.808 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.075 0.925 45 H 0.137 0.863 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.017 0.983 51 H 0.047 0.953 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -29.002 3.033 -7.996 30.237 hybrid contribution 2.063 0.114 1.543 2.579 sum -26.939 3.147 -6.453 27.880 Atomic orbital electron populations 1.21801 0.92941 1.02613 1.02639 1.21013 0.96814 0.95583 0.97185 1.21855 0.99562 0.96405 1.02586 1.20497 0.81645 1.04180 1.00970 1.24074 0.95981 0.95711 0.85238 1.70144 1.03399 1.22991 1.27055 1.22680 0.94447 0.99635 0.93432 1.20723 0.84600 1.15257 0.99767 1.17218 0.86845 0.76595 0.81332 1.90841 1.34292 1.51686 1.66856 1.47979 1.10267 1.69739 1.04704 1.22432 0.85558 1.01544 0.93514 1.21853 0.97781 0.98516 0.97507 1.21401 0.93591 1.02352 0.97546 1.20955 0.85861 0.94162 0.94640 0.98739 1.22069 0.83879 0.98574 0.92556 0.89250 1.22698 0.94004 1.01740 0.96810 1.21452 0.91588 0.94945 0.86338 1.44330 1.04464 1.69466 1.15330 1.19365 0.93221 1.31617 0.92010 0.89239 1.25723 0.96783 1.01829 1.01974 1.70175 1.04585 1.49352 1.36213 0.85128 0.76657 0.78070 0.79328 1.20469 1.22471 1.19671 1.43813 1.04626 1.46633 1.20006 0.71555 0.91286 0.92485 0.91797 0.91718 0.91246 0.95238 0.92468 0.87267 0.86949 0.80779 0.88130 0.87904 0.92473 0.86333 0.92326 0.91091 0.91249 0.91490 0.98265 0.95313 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.19 71.98 0.66 -0.19 16 2 C -0.09 -0.85 2.89 -10.80 -0.03 -0.89 16 3 C -0.15 -1.66 9.01 71.98 0.65 -1.01 16 4 C -0.03 -0.28 5.32 29.85 0.16 -0.12 16 5 C 0.25 4.17 6.38 138.19 0.88 5.06 16 6 N -0.52 -12.20 11.09 -187.39 -2.08 -14.27 16 7 C 0.05 1.37 11.76 84.10 0.99 2.36 16 8 C -0.09 -2.20 6.47 40.01 0.26 -1.94 16 9 C 0.59 18.79 7.62 86.47 0.66 19.45 16 10 O -0.56 -22.38 13.86 -4.28 -0.06 -22.44 16 11 N -0.60 -17.09 2.91 -795.72 -2.32 -19.40 16 12 C 0.09 1.60 5.69 86.03 0.49 2.09 16 13 C -0.12 -2.33 5.93 30.79 0.18 -2.15 16 14 C -0.11 -3.38 5.45 30.26 0.16 -3.22 16 15 C 0.15 6.23 2.57 45.50 0.12 6.35 16 16 H 0.00 -0.22 8.06 -2.38 -0.02 -0.24 16 17 C 0.13 4.94 3.33 46.14 0.15 5.09 16 18 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 19 C -0.11 -5.02 4.99 31.59 0.16 -4.87 16 20 C 0.18 9.72 5.47 86.87 0.48 10.20 16 21 N -0.61 -31.97 3.35 -670.50 -2.25 -34.22 16 22 C -0.23 -12.97 9.94 84.03 0.84 -12.14 16 23 H 0.09 4.64 7.31 -2.91 -0.02 4.61 16 24 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 25 N -0.95 -58.93 10.46 21.65 0.23 -58.70 16 26 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 30 N -0.54 -8.59 4.93 -176.11 -0.87 -9.46 16 31 H 0.44 3.97 6.43 -92.71 -0.60 3.38 16 32 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.06 0.94 8.06 -2.39 -0.02 0.92 16 36 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.03 0.48 7.38 -2.39 -0.02 0.46 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.18 4.66 8.06 -2.91 -0.02 4.63 16 42 H 0.10 1.27 3.90 -2.39 -0.01 1.26 16 43 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.92 7.70 -2.38 -0.02 1.90 16 47 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 48 H 0.07 3.25 6.24 -2.39 -0.01 3.24 16 49 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 50 H 0.00 -0.06 7.81 -2.39 -0.02 -0.07 16 51 H 0.03 1.67 7.19 -2.39 -0.02 1.65 16 52 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -78.30 397.23 2.27 -76.03 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.32 Total: 14.05 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 7.27 Total: 20.50 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -7.28 Total: -136.05 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -78.30 2.27 -76.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049476563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.561 kcal (2) G-P(sol) polarization free energy of solvation -78.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.60 seconds