Wall clock time and date at job start Wed Apr 1 2020 04:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47004 * 2 1 4 4 C 1.50705 * 109.46988 * 180.02562 * 3 2 1 5 5 C 1.38046 * 126.28526 * 269.70986 * 4 3 2 6 6 C 1.47423 * 126.42058 * 359.97438 * 5 4 3 7 7 O 1.21603 * 120.00141 * 38.10166 * 6 5 4 8 8 N 1.34774 * 120.00157 * 218.10957 * 6 5 4 9 9 C 1.47857 * 122.22624 * 5.36660 * 8 6 5 10 10 C 1.52719 * 111.05317 * 127.51325 * 9 8 6 11 11 C 1.53868 * 111.52718 * 48.54075 * 10 9 8 12 12 C 1.51081 * 107.34237 * 303.06847 * 11 10 9 13 13 H 1.08999 * 108.73287 * 309.15656 * 12 11 10 14 14 C 1.45728 * 122.22762 * 185.08028 * 8 6 5 15 15 H 1.09004 * 111.06521 * 119.47058 * 14 8 6 16 16 C 1.53338 * 116.43171 * 350.63266 * 14 8 6 17 17 C 1.55466 * 101.58019 * 206.92923 * 16 14 8 18 18 N 1.45027 * 119.19697 * 183.88725 * 12 11 10 19 19 C 1.36932 * 126.56023 * 28.80885 * 18 12 11 20 20 H 1.07998 * 120.00224 * 359.97438 * 19 18 12 21 21 C 1.38816 * 119.99828 * 180.02562 * 19 18 12 22 22 N 1.31618 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99837 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47377 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46911 * 120.00206 * 23 21 19 26 26 H 1.48493 * 109.47168 * 240.00005 * 23 21 19 27 27 C 1.41299 * 107.16574 * 179.84919 * 5 4 3 28 28 N 1.30447 * 108.02196 * 0.42310 * 27 5 4 29 29 N 1.34257 * 126.29189 * 90.02521 * 4 3 2 30 30 C 1.46496 * 125.75678 * 359.97438 * 29 4 3 31 31 H 1.08994 * 109.46933 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46872 * 300.00592 * 1 2 3 33 33 H 1.08998 * 109.46825 * 60.00130 * 1 2 3 34 34 H 1.08996 * 109.47235 * 240.00085 * 2 1 3 35 35 H 1.09000 * 109.47321 * 119.99700 * 2 1 3 36 36 H 1.08998 * 109.47223 * 299.99626 * 3 2 1 37 37 H 1.08995 * 109.47447 * 60.00337 * 3 2 1 38 38 H 1.08997 * 109.16273 * 247.91964 * 9 8 6 39 39 H 1.09002 * 109.15768 * 7.16525 * 9 8 6 40 40 H 1.09000 * 109.06512 * 169.06851 * 10 9 8 41 41 H 1.09004 * 109.07018 * 288.00666 * 10 9 8 42 42 H 1.09002 * 109.88079 * 62.52195 * 11 10 9 43 43 H 1.08993 * 109.88671 * 183.60413 * 11 10 9 44 44 H 1.09001 * 111.21278 * 88.77956 * 16 14 8 45 45 H 1.08996 * 110.87320 * 324.92414 * 16 14 8 46 46 H 1.09007 * 109.96210 * 263.00276 * 17 16 14 47 47 H 1.09006 * 109.99227 * 141.78014 * 17 16 14 48 48 H 0.96994 * 119.99458 * 179.97438 * 22 21 19 49 49 H 1.07997 * 125.98894 * 180.15952 * 27 5 4 50 50 H 1.08999 * 109.46833 * 90.00072 * 30 29 4 51 51 H 1.08996 * 109.46997 * 210.00577 * 30 29 4 52 52 H 1.09000 * 109.46736 * 330.00214 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3645 1.4480 1.1118 6 6 3.9268 1.4555 2.5195 7 8 2.9547 0.8077 2.8575 8 7 4.6040 2.1803 3.4319 9 6 5.7194 3.0757 3.0575 10 6 5.5060 4.4810 3.6161 11 6 5.1327 4.4447 5.1083 12 6 3.8956 3.5877 5.2423 13 1 3.1485 3.9376 4.5300 14 6 4.2816 2.1383 4.8525 15 1 5.1312 1.7847 5.4368 16 6 2.9933 1.4017 5.2385 17 6 2.6076 2.1202 6.5621 18 7 3.2690 3.4484 6.5428 19 6 3.2841 4.3671 7.5581 20 1 3.8012 5.3064 7.4289 21 6 2.6356 4.0906 8.7539 22 7 2.0067 2.9452 8.9120 23 14 2.6568 5.3435 10.1393 24 1 3.4263 6.5399 9.7130 25 1 1.2645 5.7421 10.4675 26 1 3.2960 4.7447 11.3384 27 6 5.6993 1.4422 0.6484 28 7 5.6738 1.4430 -0.6558 29 7 4.3412 1.4432 -1.0831 30 6 3.8891 1.4435 -2.4766 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 6.6511 2.6712 3.4528 39 1 5.7853 3.1297 1.9708 40 1 6.4235 5.0564 3.4924 41 1 4.7045 4.9674 3.0601 42 1 5.9493 4.0094 5.6843 43 1 4.9246 5.4541 5.4631 44 1 3.1813 0.3418 5.4101 45 1 2.2236 1.5418 4.4797 46 1 2.9600 1.5416 7.4161 47 1 1.5260 2.2440 6.6175 48 1 1.5539 2.7520 9.7477 49 1 6.5854 1.4419 1.2658 50 1 3.7767 2.4712 -2.8218 51 1 4.6237 0.9300 -3.0969 52 1 2.9306 0.9293 -2.5476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049572738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:39 Heat of formation + Delta-G solvation = 73.602900 kcal Electronic energy + Delta-G solvation = -32315.481375 eV Core-core repulsion = 28317.544918 eV Total energy + Delta-G solvation = -3997.936457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.67586 -39.91927 -37.47825 -35.60578 -35.15196 -33.47996 -32.50443 -32.06403 -30.75787 -29.00140 -28.23199 -27.26090 -26.68667 -24.60445 -24.36720 -22.21922 -21.88906 -21.41064 -21.05854 -19.93329 -19.54511 -18.60306 -17.09434 -16.44265 -15.98514 -15.89696 -15.38276 -15.07638 -14.92394 -14.67530 -14.43649 -14.19632 -14.03078 -13.74342 -13.59466 -13.46426 -13.16072 -12.88162 -12.82537 -12.72557 -12.36261 -12.32355 -12.14827 -11.74905 -11.63262 -11.49570 -11.41605 -11.06889 -11.01585 -10.82831 -10.77772 -10.62480 -10.44121 -10.34853 -10.02748 -9.90214 -9.76172 -9.55642 -9.51162 -8.95508 -8.62891 -8.48218 -8.08693 -6.76374 -5.64944 -2.98730 1.48539 2.16080 2.19009 3.21929 3.43110 3.48138 3.50775 3.52867 4.23504 4.29046 4.54195 4.65617 4.76278 4.80309 4.88557 4.95360 5.00448 5.04372 5.15434 5.19489 5.26258 5.38699 5.43110 5.45705 5.52818 5.56317 5.61362 5.67565 5.70601 5.80571 5.86591 5.93417 5.95983 6.09379 6.12077 6.17102 6.22370 6.28217 6.36648 6.39096 6.48743 6.65278 6.68119 6.80808 6.89716 6.99400 7.29949 7.42195 7.64979 7.73303 7.85035 7.92190 8.31047 8.61709 9.25077 9.88951 10.57753 11.47087 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.003076 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.729764 B = 9100.280025 C =10209.451751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.059 4.059 4 C 0.149 3.851 5 C -0.282 4.282 6 C 0.596 3.404 7 O -0.532 6.532 8 N -0.594 5.594 9 C 0.107 3.893 10 C -0.128 4.128 11 C -0.115 4.115 12 C 0.159 3.841 13 H 0.016 0.984 14 C 0.119 3.881 15 H 0.077 0.923 16 C -0.132 4.132 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.080 3.920 28 N -0.301 5.301 29 N -0.365 5.365 30 C 0.097 3.903 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.038 0.962 48 H 0.251 0.749 49 H 0.189 0.811 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -3.301 -23.094 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.098 4.098 4 C 0.017 3.983 5 C -0.297 4.297 6 C 0.384 3.616 7 O -0.409 6.409 8 N -0.327 5.327 9 C -0.016 4.016 10 C -0.167 4.167 11 C -0.154 4.154 12 C 0.050 3.950 13 H 0.034 0.966 14 C 0.015 3.985 15 H 0.095 0.905 16 C -0.170 4.170 17 C 0.048 3.952 18 N -0.318 5.318 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.107 4.107 28 N -0.121 5.121 29 N -0.145 5.145 30 C -0.044 4.044 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.206 0.794 50 H 0.096 0.904 51 H 0.110 0.890 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.788 -3.627 -23.928 24.670 hybrid contribution -0.222 0.769 1.467 1.671 sum 4.566 -2.858 -22.461 23.098 Atomic orbital electron populations 1.21738 0.95067 1.01928 1.01964 1.21445 0.96188 0.94739 1.02901 1.20413 0.85873 0.99345 1.04139 1.21429 0.94445 0.96201 0.86212 1.20129 0.92878 1.22748 0.93941 1.17177 0.82262 0.78903 0.83269 1.90746 1.26416 1.43692 1.80064 1.47777 1.34524 1.42975 1.07406 1.21853 0.89117 0.90273 1.00322 1.21893 1.01707 0.95802 0.97326 1.21422 0.98667 1.01228 0.94041 1.20648 0.92733 0.92340 0.89304 0.96641 1.22267 0.98389 0.99404 0.78471 0.90476 1.23002 0.96151 0.98284 0.99594 1.21739 0.96479 0.84636 0.92367 1.44093 1.59762 1.16957 1.10937 1.19034 1.28539 0.96183 0.91437 0.90366 1.24797 1.00342 0.97369 0.97956 1.69964 1.38984 1.22469 1.25262 0.86089 0.77216 0.80337 0.82388 1.20572 1.21854 1.21833 1.24050 0.97261 0.97623 0.91741 1.77152 0.96060 1.25633 1.13252 1.48249 1.03993 1.56074 1.06156 1.21924 1.01230 1.03662 0.77592 0.92484 0.91949 0.93115 0.92824 0.89828 0.90837 0.88279 0.91712 0.89938 0.91065 0.92008 0.91797 0.91598 0.92258 0.89414 0.92701 0.94383 0.93846 0.79382 0.90432 0.88970 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.11 -1.14 5.92 -26.73 -0.16 -1.30 16 3 C -0.06 -0.60 4.66 -27.88 -0.13 -0.73 16 4 C 0.15 1.77 6.25 -81.60 -0.51 1.26 16 5 C -0.28 -3.84 5.32 -105.06 -0.56 -4.40 16 6 C 0.60 9.72 7.36 -12.52 -0.09 9.63 16 7 O -0.53 -10.01 12.50 5.27 0.07 -9.95 16 8 N -0.59 -9.48 2.92 -165.62 -0.48 -9.96 16 9 C 0.11 1.34 5.44 -3.44 -0.02 1.32 16 10 C -0.13 -1.70 5.92 -26.42 -0.16 -1.85 16 11 C -0.11 -2.00 5.45 -27.24 -0.15 -2.14 16 12 C 0.16 3.35 2.57 -68.64 -0.18 3.17 16 13 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 14 C 0.12 2.28 3.28 -67.13 -0.22 2.06 16 15 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 16 C -0.13 -2.81 5.12 -25.25 -0.13 -2.94 16 17 C 0.17 4.38 5.47 -1.69 -0.01 4.37 16 18 N -0.59 -15.29 3.35 -163.60 -0.55 -15.84 16 19 C -0.22 -6.20 9.94 -15.06 -0.15 -6.35 16 20 H 0.08 2.09 7.31 -52.49 -0.38 1.70 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -27.37 10.46 55.49 0.58 -26.79 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.08 0.95 9.67 -16.98 -0.16 0.79 16 28 N -0.30 -3.67 12.50 30.86 0.39 -3.28 16 29 N -0.36 -3.87 3.98 -63.34 -0.25 -4.12 16 30 C 0.10 0.58 11.06 59.84 0.66 1.25 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.07 7.62 -51.93 -0.40 0.68 16 36 H 0.07 0.56 7.69 -51.93 -0.40 0.16 16 37 H 0.10 1.23 7.65 -51.93 -0.40 0.83 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.91 4.89 -51.93 -0.25 0.66 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.11 8.12 -51.93 -0.42 0.68 16 43 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.94 6.03 -51.93 -0.31 1.63 16 46 H 0.05 1.52 7.18 -51.93 -0.37 1.15 16 47 H 0.04 1.06 7.81 -51.93 -0.41 0.66 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.19 1.77 7.23 -52.49 -0.38 1.40 16 50 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.09 0.38 7.62 -51.93 -0.40 -0.02 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -33.68 398.19 -9.68 -43.36 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.72 Total: 0.53 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.69 Total: 2.83 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.32 Total: -59.99 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.68 -9.68 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049572738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.963 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds