Wall clock time and date at job start Wed Apr 1 2020 04:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47004 * 2 1 4 4 C 1.50705 * 109.46988 * 180.02562 * 3 2 1 5 5 C 1.38046 * 126.28526 * 269.70986 * 4 3 2 6 6 C 1.47423 * 126.42058 * 359.97438 * 5 4 3 7 7 O 1.21603 * 120.00141 * 38.10166 * 6 5 4 8 8 N 1.34774 * 120.00157 * 218.10957 * 6 5 4 9 9 C 1.47857 * 122.22624 * 5.36660 * 8 6 5 10 10 C 1.52719 * 111.05317 * 127.51325 * 9 8 6 11 11 C 1.53868 * 111.52718 * 48.54075 * 10 9 8 12 12 C 1.51081 * 107.34237 * 303.06847 * 11 10 9 13 13 H 1.08999 * 108.73287 * 309.15656 * 12 11 10 14 14 C 1.45728 * 122.22762 * 185.08028 * 8 6 5 15 15 H 1.09004 * 111.06521 * 119.47058 * 14 8 6 16 16 C 1.53338 * 116.43171 * 350.63266 * 14 8 6 17 17 C 1.55466 * 101.58019 * 206.92923 * 16 14 8 18 18 N 1.45027 * 119.19697 * 183.88725 * 12 11 10 19 19 C 1.36932 * 126.56023 * 28.80885 * 18 12 11 20 20 H 1.07998 * 120.00224 * 359.97438 * 19 18 12 21 21 C 1.38816 * 119.99828 * 180.02562 * 19 18 12 22 22 N 1.31618 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99837 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47377 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46911 * 120.00206 * 23 21 19 26 26 H 1.48493 * 109.47168 * 240.00005 * 23 21 19 27 27 C 1.41299 * 107.16574 * 179.84919 * 5 4 3 28 28 N 1.30447 * 108.02196 * 0.42310 * 27 5 4 29 29 N 1.34257 * 126.29189 * 90.02521 * 4 3 2 30 30 C 1.46496 * 125.75678 * 359.97438 * 29 4 3 31 31 H 1.08994 * 109.46933 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46872 * 300.00592 * 1 2 3 33 33 H 1.08998 * 109.46825 * 60.00130 * 1 2 3 34 34 H 1.08996 * 109.47235 * 240.00085 * 2 1 3 35 35 H 1.09000 * 109.47321 * 119.99700 * 2 1 3 36 36 H 1.08998 * 109.47223 * 299.99626 * 3 2 1 37 37 H 1.08995 * 109.47447 * 60.00337 * 3 2 1 38 38 H 1.08997 * 109.16273 * 247.91964 * 9 8 6 39 39 H 1.09002 * 109.15768 * 7.16525 * 9 8 6 40 40 H 1.09000 * 109.06512 * 169.06851 * 10 9 8 41 41 H 1.09004 * 109.07018 * 288.00666 * 10 9 8 42 42 H 1.09002 * 109.88079 * 62.52195 * 11 10 9 43 43 H 1.08993 * 109.88671 * 183.60413 * 11 10 9 44 44 H 1.09001 * 111.21278 * 88.77956 * 16 14 8 45 45 H 1.08996 * 110.87320 * 324.92414 * 16 14 8 46 46 H 1.09007 * 109.96210 * 263.00276 * 17 16 14 47 47 H 1.09006 * 109.99227 * 141.78014 * 17 16 14 48 48 H 0.96994 * 119.99458 * 179.97438 * 22 21 19 49 49 H 1.07997 * 125.98894 * 180.15952 * 27 5 4 50 50 H 1.08999 * 109.46833 * 90.00072 * 30 29 4 51 51 H 1.08996 * 109.46997 * 210.00577 * 30 29 4 52 52 H 1.09000 * 109.46736 * 330.00214 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3645 1.4480 1.1118 6 6 3.9268 1.4555 2.5195 7 8 2.9547 0.8077 2.8575 8 7 4.6040 2.1803 3.4319 9 6 5.7194 3.0757 3.0575 10 6 5.5060 4.4810 3.6161 11 6 5.1327 4.4447 5.1083 12 6 3.8956 3.5877 5.2423 13 1 3.1485 3.9376 4.5300 14 6 4.2816 2.1383 4.8525 15 1 5.1312 1.7847 5.4368 16 6 2.9933 1.4017 5.2385 17 6 2.6076 2.1202 6.5621 18 7 3.2690 3.4484 6.5428 19 6 3.2841 4.3671 7.5581 20 1 3.8012 5.3064 7.4289 21 6 2.6356 4.0906 8.7539 22 7 2.0067 2.9452 8.9120 23 14 2.6568 5.3435 10.1393 24 1 3.4263 6.5399 9.7130 25 1 1.2645 5.7421 10.4675 26 1 3.2960 4.7447 11.3384 27 6 5.6993 1.4422 0.6484 28 7 5.6738 1.4430 -0.6558 29 7 4.3412 1.4432 -1.0831 30 6 3.8891 1.4435 -2.4766 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 6.6511 2.6712 3.4528 39 1 5.7853 3.1297 1.9708 40 1 6.4235 5.0564 3.4924 41 1 4.7045 4.9674 3.0601 42 1 5.9493 4.0094 5.6843 43 1 4.9246 5.4541 5.4631 44 1 3.1813 0.3418 5.4101 45 1 2.2236 1.5418 4.4797 46 1 2.9600 1.5416 7.4161 47 1 1.5260 2.2440 6.6175 48 1 1.5539 2.7520 9.7477 49 1 6.5854 1.4419 1.2658 50 1 3.7767 2.4712 -2.8218 51 1 4.6237 0.9300 -3.0969 52 1 2.9306 0.9293 -2.5476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049572738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:38 Heat of formation + Delta-G solvation = 52.997101 kcal Electronic energy + Delta-G solvation = -32316.374909 eV Core-core repulsion = 28317.544918 eV Total energy + Delta-G solvation = -3998.829991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.60121 -41.31406 -38.95997 -36.95724 -36.15157 -34.47694 -34.06485 -33.65704 -31.72539 -30.76212 -29.73468 -28.22505 -27.42273 -26.35749 -25.92061 -23.32529 -22.89019 -22.58989 -22.49034 -21.37803 -20.97699 -19.71300 -18.63517 -17.81963 -17.16899 -16.90822 -16.80375 -16.43720 -16.11025 -15.96348 -15.68911 -15.50324 -15.29800 -15.15238 -14.78852 -14.45973 -14.27364 -14.14762 -13.92372 -13.80872 -13.49844 -13.47243 -13.29507 -13.13330 -13.09081 -12.85344 -12.73614 -12.45455 -12.25274 -12.17965 -12.04718 -11.92481 -11.84426 -11.74622 -11.66490 -11.56788 -11.54257 -11.37255 -10.76154 -10.32841 -10.29812 -9.62458 -9.40104 -8.88267 -7.82167 -5.18924 0.57177 1.21348 1.43408 1.46697 1.48156 1.58287 2.00813 2.33885 2.52087 3.36321 3.37585 3.46945 3.54253 3.80635 3.88238 4.01167 4.04387 4.08636 4.11702 4.18256 4.21405 4.31581 4.36705 4.41653 4.43353 4.50517 4.60636 4.61781 4.64267 4.67456 4.69044 4.76629 4.82514 4.88856 4.91494 4.98027 5.06623 5.13673 5.17151 5.19529 5.30717 5.34811 5.41127 5.42705 5.48113 5.51097 5.62985 5.68534 5.79109 5.90925 6.20434 6.54658 6.63054 7.07669 7.35110 7.77677 8.48093 9.29763 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.003076 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.729764 B = 9100.280025 C =10209.451751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.055 4.055 4 C 0.151 3.849 5 C -0.308 4.308 6 C 0.593 3.407 7 O -0.568 6.568 8 N -0.596 5.596 9 C 0.104 3.896 10 C -0.119 4.119 11 C -0.110 4.110 12 C 0.154 3.846 13 H -0.005 1.005 14 C 0.135 3.865 15 H 0.080 0.920 16 C -0.114 4.114 17 C 0.184 3.816 18 N -0.612 5.612 19 C -0.231 4.231 20 H 0.089 0.911 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.262 1.262 25 H -0.296 1.296 26 H -0.292 1.292 27 C 0.085 3.915 28 N -0.315 5.315 29 N -0.358 5.358 30 C 0.084 3.916 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.025 0.975 47 H -0.002 1.002 48 H 0.245 0.755 49 H 0.211 0.789 50 H 0.095 0.905 51 H 0.103 0.897 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 -2.134 -26.217 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.094 4.094 4 C 0.017 3.983 5 C -0.323 4.323 6 C 0.383 3.617 7 O -0.448 6.448 8 N -0.327 5.327 9 C -0.017 4.017 10 C -0.157 4.157 11 C -0.148 4.148 12 C 0.046 3.954 13 H 0.012 0.988 14 C 0.030 3.970 15 H 0.098 0.902 16 C -0.153 4.153 17 C 0.058 3.942 18 N -0.336 5.336 19 C -0.359 4.359 20 H 0.106 0.894 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.807 3.193 24 H -0.186 1.186 25 H -0.223 1.223 26 H -0.219 1.219 27 C -0.102 4.102 28 N -0.134 5.134 29 N -0.137 5.137 30 C -0.055 4.055 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.043 0.957 47 H 0.016 0.984 48 H 0.055 0.945 49 H 0.228 0.772 50 H 0.114 0.886 51 H 0.121 0.879 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.977 -2.430 -27.126 28.114 hybrid contribution -0.950 0.389 2.317 2.534 sum 6.027 -2.040 -24.809 25.612 Atomic orbital electron populations 1.21720 0.94244 1.02321 1.02147 1.21363 0.96854 0.94388 1.02067 1.20415 0.85137 0.99496 1.04400 1.21592 0.95021 0.95223 0.86419 1.19953 0.94314 1.25535 0.92534 1.17614 0.81583 0.78135 0.84408 1.90725 1.28076 1.45150 1.80823 1.47823 1.35517 1.43744 1.05661 1.22146 0.88615 0.89117 1.01809 1.21867 1.03267 0.96884 0.93707 1.21392 0.96506 0.99525 0.97408 1.20812 0.93628 0.94588 0.86383 0.98772 1.21857 0.96986 0.97187 0.80969 0.90210 1.22733 0.97442 0.98171 0.96927 1.21436 0.94051 0.85178 0.93496 1.44355 1.60369 1.16628 1.12286 1.19450 1.27775 0.96823 0.91889 0.89365 1.25692 1.00551 0.99404 1.00633 1.70193 1.40175 1.24500 1.25498 0.85001 0.76870 0.78497 0.78930 1.18563 1.22348 1.21925 1.24337 0.97144 0.96895 0.91819 1.77126 0.97033 1.25989 1.13274 1.48591 1.03279 1.54500 1.07326 1.22368 1.02547 1.05380 0.75254 0.92040 0.93965 0.90674 0.90767 0.93444 0.87464 0.91039 0.89081 0.87763 0.87191 0.92629 0.91446 0.92627 0.91882 0.90419 0.95692 0.98373 0.94523 0.77237 0.88647 0.87882 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 71.98 0.71 -1.76 16 2 C -0.11 -2.08 5.92 30.60 0.18 -1.90 16 3 C -0.06 -1.07 4.66 29.85 0.14 -0.93 16 4 C 0.15 3.32 6.25 42.14 0.26 3.58 16 5 C -0.31 -7.97 5.32 -20.15 -0.11 -8.07 16 6 C 0.59 19.30 7.36 86.66 0.64 19.93 16 7 O -0.57 -22.26 12.50 -4.04 -0.05 -22.31 16 8 N -0.60 -18.50 2.92 -796.15 -2.32 -20.82 16 9 C 0.10 2.29 5.44 86.03 0.47 2.75 16 10 C -0.12 -2.79 5.92 30.79 0.18 -2.60 16 11 C -0.11 -3.67 5.45 30.26 0.16 -3.51 16 12 C 0.15 6.60 2.57 45.32 0.12 6.71 16 13 H -0.01 -0.24 8.04 -2.39 -0.02 -0.26 16 14 C 0.14 5.25 3.28 45.93 0.15 5.40 16 15 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 16 C -0.11 -5.14 5.12 31.56 0.16 -4.98 16 17 C 0.18 9.98 5.47 86.87 0.48 10.46 16 18 N -0.61 -32.82 3.35 -671.52 -2.25 -35.07 16 19 C -0.23 -13.10 9.94 84.04 0.84 -12.26 16 20 H 0.09 4.72 7.31 -2.91 -0.02 4.70 16 21 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 22 N -0.95 -59.63 10.46 21.65 0.23 -59.41 16 23 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 C 0.08 1.79 9.67 85.65 0.83 2.61 16 28 N -0.31 -6.73 12.50 -56.27 -0.70 -7.43 16 29 N -0.36 -6.52 3.98 -354.32 -1.41 -7.93 16 30 C 0.08 0.69 11.06 127.77 1.41 2.10 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.26 7.62 -2.39 -0.02 1.24 16 36 H 0.11 1.31 7.69 -2.39 -0.02 1.29 16 37 H 0.07 1.81 7.65 -2.39 -0.02 1.79 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.92 4.89 -2.39 -0.01 1.90 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 42 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 43 H 0.05 1.96 7.70 -2.39 -0.02 1.94 16 44 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.08 3.67 6.03 -2.39 -0.01 3.66 16 46 H 0.02 1.48 7.18 -2.38 -0.02 1.46 16 47 H 0.00 -0.12 7.81 -2.38 -0.02 -0.14 16 48 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 49 H 0.21 3.22 7.23 -2.91 -0.02 3.20 16 50 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.11 0.45 7.62 -2.39 -0.02 0.44 16 Total: -1.00 -78.46 398.19 3.51 -74.95 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.90 Total: 15.43 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 7.09 Total: 13.91 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -6.46 Total: -130.66 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.46 3.51 -74.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049572738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.949 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds