Wall clock time and date at job start Wed Apr 1 2020 04:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47339 * 2 1 4 4 C 1.50698 * 109.47250 * 120.00573 * 2 1 3 5 5 C 1.39667 * 126.06742 * 274.99568 * 4 2 1 6 6 C 1.38400 * 105.36149 * 180.02562 * 5 4 2 7 7 C 1.47166 * 126.88953 * 179.97438 * 6 5 4 8 8 O 1.21627 * 120.00259 * 198.25530 * 7 6 5 9 9 N 1.34774 * 119.99475 * 18.25088 * 7 6 5 10 10 C 1.47850 * 122.23024 * 6.06879 * 9 7 6 11 11 C 1.52719 * 111.05406 * 127.51212 * 10 9 7 12 12 C 1.53869 * 111.52384 * 48.54124 * 11 10 9 13 13 C 1.51080 * 107.34284 * 303.06711 * 12 11 10 14 14 H 1.08994 * 108.73393 * 308.52743 * 13 12 11 15 15 C 1.45728 * 122.22479 * 185.78873 * 9 7 6 16 16 H 1.08994 * 111.07643 * 119.46957 * 15 9 7 17 17 C 1.53131 * 115.92051 * 350.49052 * 15 9 7 18 18 C 1.55473 * 101.18938 * 206.28717 * 17 15 9 19 19 N 1.45023 * 119.19399 * 183.26237 * 13 12 11 20 20 C 1.36936 * 126.56472 * 28.81141 * 19 13 12 21 21 H 1.07999 * 120.00041 * 359.97438 * 20 19 13 22 22 C 1.38809 * 120.00295 * 179.97438 * 20 19 13 23 23 N 1.31618 * 119.99828 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00323 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46703 * 60.00115 * 24 22 20 26 26 H 1.48499 * 109.47306 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47254 * 300.00643 * 24 22 20 28 28 N 1.36601 * 106.23014 * 0.02562 * 6 5 4 29 29 C 1.46499 * 125.19013 * 179.97438 * 28 6 5 30 30 N 1.28435 * 109.61979 * 0.22726 * 28 6 5 31 31 H 1.09003 * 109.47146 * 300.00109 * 1 2 3 32 32 H 1.09006 * 109.47301 * 59.99488 * 1 2 3 33 33 H 1.09002 * 109.47660 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.46831 * 240.00233 * 2 1 3 35 35 H 1.09001 * 109.46883 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47494 * 300.00527 * 3 2 1 37 37 H 1.09000 * 109.46730 * 60.00527 * 3 2 1 38 38 H 1.08007 * 127.31976 * 0.02562 * 5 4 2 39 39 H 1.08998 * 109.16427 * 247.91778 * 10 9 7 40 40 H 1.09000 * 109.16145 * 7.10800 * 10 9 7 41 41 H 1.08998 * 109.06505 * 169.06386 * 11 10 9 42 42 H 1.08997 * 109.07168 * 288.07827 * 11 10 9 43 43 H 1.09001 * 109.88419 * 62.52579 * 12 11 10 44 44 H 1.08996 * 109.88139 * 183.53210 * 12 11 10 45 45 H 1.09001 * 110.99967 * 88.45024 * 17 15 9 46 46 H 1.08999 * 111.46016 * 324.32066 * 17 15 9 47 47 H 1.09003 * 109.96320 * 263.46488 * 18 17 15 48 48 H 1.08998 * 109.99077 * 142.23503 * 18 17 15 49 49 H 0.97009 * 120.00000 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.47214 * 84.25913 * 29 28 6 51 51 H 1.08996 * 109.47304 * 204.25910 * 29 28 6 52 52 H 1.08999 * 109.47202 * 324.26196 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2137 -0.1407 2.4925 6 6 2.6860 -1.1659 3.2933 7 6 3.0362 -1.0827 4.7202 8 8 3.7389 -1.9375 5.2249 9 7 2.5782 -0.0590 5.4677 10 6 1.6170 0.9335 4.9414 11 6 0.4084 1.0701 5.8650 12 6 0.8364 1.2474 7.3323 13 6 1.6971 0.0604 7.6969 14 1 1.1662 -0.8527 7.4279 15 6 2.9929 0.1399 6.8505 16 1 3.4888 1.1023 6.9764 17 6 3.7992 -1.0007 7.4782 18 6 3.4680 -0.8105 8.9853 19 7 2.1849 -0.0686 9.0565 20 6 1.5773 0.4033 10.1894 21 1 0.6385 0.9324 10.1183 22 6 2.1681 0.2016 11.4292 23 7 3.3125 -0.4427 11.5159 24 14 1.3397 0.8459 12.9746 25 1 -0.0027 0.2259 13.1117 26 1 2.1671 0.5035 14.1592 27 1 1.1964 2.3211 12.8811 28 7 2.7631 -2.2705 2.4933 29 6 3.2171 -3.5950 2.9243 30 7 2.3819 -1.9695 1.3044 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 3.1300 1.4424 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6767 1.9562 0.8900 38 1 2.0254 0.8827 2.7821 39 1 2.1124 1.9005 4.8550 40 1 1.2792 0.6161 3.9548 41 1 -0.1782 1.9360 5.5580 42 1 -0.2075 0.1749 5.7804 43 1 1.4090 2.1683 7.4428 44 1 -0.0440 1.2794 7.9740 45 1 4.8658 -0.8726 7.2937 46 1 3.4576 -1.9729 7.1231 47 1 4.2574 -0.2361 9.4702 48 1 3.3636 -1.7815 9.4693 49 1 3.7252 -0.5840 12.3823 50 1 2.3850 -4.1352 3.3759 51 1 3.5862 -4.1509 2.0624 52 1 4.0180 -3.4845 3.6554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049819266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:59 Heat of formation + Delta-G solvation = 91.130233 kcal Electronic energy + Delta-G solvation = -32237.488369 eV Core-core repulsion = 28240.311955 eV Total energy + Delta-G solvation = -3997.176414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.73176 -40.23564 -37.76614 -36.18436 -35.56520 -32.86868 -32.55743 -32.20973 -30.93434 -28.87422 -28.21538 -27.41426 -26.89617 -25.18757 -24.49218 -23.10756 -22.28185 -21.54178 -21.06355 -19.88445 -19.58525 -18.72591 -16.99498 -16.63007 -16.40824 -16.21991 -15.49562 -15.01639 -14.95383 -14.72394 -14.65117 -14.37222 -14.04294 -13.65112 -13.58283 -13.47421 -13.33549 -12.91370 -12.74566 -12.63989 -12.48130 -12.36548 -12.20995 -11.85009 -11.63159 -11.55873 -11.41935 -11.37160 -11.09319 -10.85207 -10.77415 -10.63033 -10.49325 -10.37827 -10.12469 -10.02683 -9.87479 -9.62044 -9.23616 -9.07693 -8.91891 -8.58704 -8.30569 -6.83879 -5.70339 -3.04805 1.25757 2.27408 2.43059 3.11484 3.23809 3.40324 3.44663 3.46105 4.18010 4.33277 4.49214 4.64428 4.81935 4.84086 4.93722 5.05888 5.07683 5.15741 5.16897 5.30588 5.33707 5.36752 5.39770 5.41004 5.43185 5.47859 5.59933 5.61177 5.64674 5.71895 5.76778 5.79838 5.83707 5.97718 6.01930 6.05589 6.07970 6.22795 6.27803 6.36514 6.38719 6.52769 6.63844 6.70271 6.73932 6.87523 7.14954 7.53457 7.58718 7.65716 7.83099 7.97091 8.23599 8.25871 9.18878 9.82722 10.50623 11.41578 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.002862 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.368235 B = 9781.875271 C =10754.044425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 C -0.144 4.144 4 C 0.030 3.970 5 C -0.200 4.200 6 C -0.023 4.023 7 C 0.590 3.410 8 O -0.532 6.532 9 N -0.580 5.580 10 C 0.080 3.920 11 C -0.129 4.129 12 C -0.116 4.116 13 C 0.160 3.840 14 H 0.018 0.982 15 C 0.119 3.881 16 H 0.084 0.916 17 C -0.134 4.134 18 C 0.172 3.828 19 N -0.592 5.592 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 N -0.259 5.259 29 C 0.084 3.916 30 N -0.281 5.281 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.172 0.828 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.039 0.961 49 H 0.253 0.747 50 H 0.083 0.917 51 H 0.093 0.907 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 2.050 -23.168 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.127 4.127 5 C -0.229 4.229 6 C -0.152 4.152 7 C 0.377 3.623 8 O -0.410 6.410 9 N -0.312 5.312 10 C -0.042 4.042 11 C -0.167 4.167 12 C -0.155 4.155 13 C 0.050 3.950 14 H 0.035 0.965 15 C 0.015 3.985 16 H 0.102 0.898 17 C -0.173 4.173 18 C 0.048 3.952 19 N -0.317 5.317 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 N -0.045 5.045 29 C -0.056 4.056 30 N -0.114 5.114 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.189 0.811 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.101 0.899 51 H 0.112 0.888 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.889 0.418 -23.190 23.373 hybrid contribution -0.481 1.005 1.444 1.824 sum -3.370 1.423 -21.746 22.052 Atomic orbital electron populations 1.21818 0.93950 1.02149 1.02080 1.19400 0.95603 0.94926 0.92943 1.21831 1.01397 0.94718 1.02224 1.21932 1.04211 0.90269 0.96241 1.22418 1.07397 1.00198 0.92862 1.21589 1.10192 0.89033 0.94418 1.16880 0.80389 0.81838 0.83234 1.90775 1.39014 1.39123 1.72087 1.47666 1.43386 1.26810 1.13343 1.22563 0.90241 0.92165 0.99239 1.21900 0.96854 1.02179 0.95797 1.21440 1.00591 0.99373 0.94085 1.20661 0.92222 0.95440 0.86644 0.96511 1.22414 0.98666 0.99722 0.77714 0.89843 1.23007 0.98664 0.98201 0.97390 1.21749 0.87964 0.96369 0.89159 1.44086 1.22961 1.64973 0.99681 1.18941 1.03185 1.29958 0.83478 0.90399 1.24802 0.97289 1.00687 0.97531 1.69938 1.17844 1.45581 1.23350 0.86229 0.78387 0.78485 0.82815 1.21217 1.21618 1.21170 1.45521 1.44542 1.09606 1.04843 1.22362 1.02322 0.78688 1.02254 1.73092 1.17370 1.17896 1.03033 0.92247 0.92072 0.92575 0.89972 0.92386 0.91977 0.92111 0.81138 0.91228 0.87658 0.90730 0.91877 0.91687 0.91426 0.92130 0.89396 0.92548 0.94270 0.93664 0.89879 0.88835 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.17 37.15 0.34 -0.68 16 2 C -0.01 -0.07 3.38 -91.78 -0.31 -0.38 16 3 C -0.14 -0.95 8.79 37.16 0.33 -0.63 16 4 C 0.03 0.34 6.13 -82.47 -0.51 -0.16 16 5 C -0.20 -2.30 7.99 -38.99 -0.31 -2.61 16 6 C -0.02 -0.32 6.69 -82.06 -0.55 -0.87 16 7 C 0.59 9.49 7.64 -12.64 -0.10 9.39 16 8 O -0.53 -9.75 11.60 5.25 0.06 -9.69 16 9 N -0.58 -8.99 2.92 -165.84 -0.48 -9.48 16 10 C 0.08 0.94 5.30 -3.45 -0.02 0.92 16 11 C -0.13 -1.60 5.93 -26.42 -0.16 -1.76 16 12 C -0.12 -1.94 5.44 -27.24 -0.15 -2.09 16 13 C 0.16 3.28 2.59 -68.64 -0.18 3.10 16 14 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 15 C 0.12 2.21 3.27 -67.23 -0.22 1.99 16 16 H 0.08 1.56 8.13 -51.93 -0.42 1.14 16 17 C -0.13 -2.78 5.06 -25.35 -0.13 -2.91 16 18 C 0.17 4.29 5.46 -1.69 -0.01 4.28 16 19 N -0.59 -15.00 3.34 -163.60 -0.55 -15.54 16 20 C -0.23 -6.22 9.94 -15.06 -0.15 -6.37 16 21 H 0.08 2.03 7.33 -52.49 -0.38 1.65 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -27.07 10.46 55.49 0.58 -26.49 16 24 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 N -0.26 -3.45 3.75 -63.88 -0.24 -3.69 16 29 C 0.08 0.90 10.88 59.85 0.65 1.55 16 30 N -0.28 -3.69 11.90 33.64 0.40 -3.29 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.37 7.37 -51.93 -0.38 -0.01 16 38 H 0.17 1.56 5.07 -52.48 -0.27 1.29 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.11 1.07 3.64 -51.93 -0.19 0.88 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 44 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.90 6.04 -51.93 -0.31 1.59 16 47 H 0.06 1.53 7.19 -51.93 -0.37 1.16 16 48 H 0.04 1.08 7.81 -51.93 -0.41 0.67 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.11 1.32 6.41 -51.93 -0.33 0.99 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -32.53 392.91 -9.41 -41.94 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.52 Total: 0.89 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.56 Total: 2.48 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.29 Total: -58.49 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.06 Total: -9.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.53 -9.41 -41.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049819266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.067 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds