Wall clock time and date at job start Wed Apr 1 2020 04:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47339 * 2 1 4 4 C 1.50698 * 109.47250 * 120.00573 * 2 1 3 5 5 C 1.39667 * 126.06742 * 274.99568 * 4 2 1 6 6 C 1.38400 * 105.36149 * 180.02562 * 5 4 2 7 7 C 1.47166 * 126.88953 * 179.97438 * 6 5 4 8 8 O 1.21627 * 120.00259 * 198.25530 * 7 6 5 9 9 N 1.34774 * 119.99475 * 18.25088 * 7 6 5 10 10 C 1.47850 * 122.23024 * 6.06879 * 9 7 6 11 11 C 1.52719 * 111.05406 * 127.51212 * 10 9 7 12 12 C 1.53869 * 111.52384 * 48.54124 * 11 10 9 13 13 C 1.51080 * 107.34284 * 303.06711 * 12 11 10 14 14 H 1.08994 * 108.73393 * 308.52743 * 13 12 11 15 15 C 1.45728 * 122.22479 * 185.78873 * 9 7 6 16 16 H 1.08994 * 111.07643 * 119.46957 * 15 9 7 17 17 C 1.53131 * 115.92051 * 350.49052 * 15 9 7 18 18 C 1.55473 * 101.18938 * 206.28717 * 17 15 9 19 19 N 1.45023 * 119.19399 * 183.26237 * 13 12 11 20 20 C 1.36936 * 126.56472 * 28.81141 * 19 13 12 21 21 H 1.07999 * 120.00041 * 359.97438 * 20 19 13 22 22 C 1.38809 * 120.00295 * 179.97438 * 20 19 13 23 23 N 1.31618 * 119.99828 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00323 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46703 * 60.00115 * 24 22 20 26 26 H 1.48499 * 109.47306 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47254 * 300.00643 * 24 22 20 28 28 N 1.36601 * 106.23014 * 0.02562 * 6 5 4 29 29 C 1.46499 * 125.19013 * 179.97438 * 28 6 5 30 30 N 1.28435 * 109.61979 * 0.22726 * 28 6 5 31 31 H 1.09003 * 109.47146 * 300.00109 * 1 2 3 32 32 H 1.09006 * 109.47301 * 59.99488 * 1 2 3 33 33 H 1.09002 * 109.47660 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.46831 * 240.00233 * 2 1 3 35 35 H 1.09001 * 109.46883 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47494 * 300.00527 * 3 2 1 37 37 H 1.09000 * 109.46730 * 60.00527 * 3 2 1 38 38 H 1.08007 * 127.31976 * 0.02562 * 5 4 2 39 39 H 1.08998 * 109.16427 * 247.91778 * 10 9 7 40 40 H 1.09000 * 109.16145 * 7.10800 * 10 9 7 41 41 H 1.08998 * 109.06505 * 169.06386 * 11 10 9 42 42 H 1.08997 * 109.07168 * 288.07827 * 11 10 9 43 43 H 1.09001 * 109.88419 * 62.52579 * 12 11 10 44 44 H 1.08996 * 109.88139 * 183.53210 * 12 11 10 45 45 H 1.09001 * 110.99967 * 88.45024 * 17 15 9 46 46 H 1.08999 * 111.46016 * 324.32066 * 17 15 9 47 47 H 1.09003 * 109.96320 * 263.46488 * 18 17 15 48 48 H 1.08998 * 109.99077 * 142.23503 * 18 17 15 49 49 H 0.97009 * 120.00000 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.47214 * 84.25913 * 29 28 6 51 51 H 1.08996 * 109.47304 * 204.25910 * 29 28 6 52 52 H 1.08999 * 109.47202 * 324.26196 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2137 -0.1407 2.4925 6 6 2.6860 -1.1659 3.2933 7 6 3.0362 -1.0827 4.7202 8 8 3.7389 -1.9375 5.2249 9 7 2.5782 -0.0590 5.4677 10 6 1.6170 0.9335 4.9414 11 6 0.4084 1.0701 5.8650 12 6 0.8364 1.2474 7.3323 13 6 1.6971 0.0604 7.6969 14 1 1.1662 -0.8527 7.4279 15 6 2.9929 0.1399 6.8505 16 1 3.4888 1.1023 6.9764 17 6 3.7992 -1.0007 7.4782 18 6 3.4680 -0.8105 8.9853 19 7 2.1849 -0.0686 9.0565 20 6 1.5773 0.4033 10.1894 21 1 0.6385 0.9324 10.1183 22 6 2.1681 0.2016 11.4292 23 7 3.3125 -0.4427 11.5159 24 14 1.3397 0.8459 12.9746 25 1 -0.0027 0.2259 13.1117 26 1 2.1671 0.5035 14.1592 27 1 1.1964 2.3211 12.8811 28 7 2.7631 -2.2705 2.4933 29 6 3.2171 -3.5950 2.9243 30 7 2.3819 -1.9695 1.3044 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 3.1300 1.4424 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6767 1.9562 0.8900 38 1 2.0254 0.8827 2.7821 39 1 2.1124 1.9005 4.8550 40 1 1.2792 0.6161 3.9548 41 1 -0.1782 1.9360 5.5580 42 1 -0.2075 0.1749 5.7804 43 1 1.4090 2.1683 7.4428 44 1 -0.0440 1.2794 7.9740 45 1 4.8658 -0.8726 7.2937 46 1 3.4576 -1.9729 7.1231 47 1 4.2574 -0.2361 9.4702 48 1 3.3636 -1.7815 9.4693 49 1 3.7252 -0.5840 12.3823 50 1 2.3850 -4.1352 3.3759 51 1 3.5862 -4.1509 2.0624 52 1 4.0180 -3.4845 3.6554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049819266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:58 Heat of formation + Delta-G solvation = 71.714820 kcal Electronic energy + Delta-G solvation = -32238.330285 eV Core-core repulsion = 28240.311955 eV Total energy + Delta-G solvation = -3998.018330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.68271 -41.61060 -39.21231 -37.20648 -36.71462 -34.38539 -34.07727 -33.20453 -32.21806 -30.61216 -29.66864 -27.99627 -27.68371 -26.58704 -26.32252 -23.99825 -23.54893 -22.82786 -22.33980 -21.41043 -20.95477 -19.67150 -18.65896 -17.85893 -17.43661 -17.24716 -17.16624 -16.58900 -16.24785 -15.95557 -15.74181 -15.59391 -15.09459 -14.96916 -14.81678 -14.58506 -14.31534 -14.18107 -14.08023 -13.87359 -13.55456 -13.39313 -13.33925 -13.15155 -12.89299 -12.76697 -12.68138 -12.37235 -12.22530 -12.15112 -12.07945 -11.95352 -11.86103 -11.78821 -11.72597 -11.57907 -11.43791 -11.25533 -10.78912 -10.53339 -10.13930 -9.82882 -9.61777 -8.91722 -7.83979 -5.21020 0.21070 1.28647 1.46119 1.49685 1.55122 1.55807 1.99366 2.07652 2.50685 3.18106 3.34566 3.41817 3.46302 3.84572 3.93887 3.97965 4.03128 4.06493 4.16943 4.21002 4.24766 4.30108 4.36288 4.38000 4.46208 4.54957 4.56257 4.58387 4.62636 4.66589 4.71291 4.83025 4.91060 4.96686 5.01719 5.08186 5.11292 5.14386 5.15732 5.27366 5.28853 5.41338 5.46929 5.48373 5.52180 5.56587 5.59487 5.60747 5.72025 5.73636 6.17730 6.33974 6.95523 7.05386 7.09426 7.75510 8.45120 9.27556 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.002862 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.368235 B = 9781.875271 C =10754.044425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.029 3.971 5 C -0.184 4.184 6 C -0.047 4.047 7 C 0.587 3.413 8 O -0.565 6.565 9 N -0.581 5.581 10 C 0.075 3.925 11 C -0.119 4.119 12 C -0.112 4.112 13 C 0.154 3.846 14 H -0.004 1.004 15 C 0.136 3.864 16 H 0.089 0.911 17 C -0.117 4.117 18 C 0.183 3.817 19 N -0.611 5.611 20 C -0.234 4.234 21 H 0.089 0.911 22 C -0.069 4.069 23 N -0.955 5.955 24 Si 0.979 3.021 25 H -0.279 1.279 26 H -0.298 1.298 27 H -0.272 1.272 28 N -0.269 5.269 29 C 0.082 3.918 30 N -0.297 5.297 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.200 0.800 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.027 0.973 48 H -0.002 1.002 49 H 0.246 0.754 50 H 0.087 0.913 51 H 0.114 0.886 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 4.727 -25.959 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.127 4.127 5 C -0.212 4.212 6 C -0.175 4.175 7 C 0.375 3.625 8 O -0.445 6.445 9 N -0.312 5.312 10 C -0.045 4.045 11 C -0.157 4.157 12 C -0.150 4.150 13 C 0.046 3.954 14 H 0.013 0.987 15 C 0.031 3.969 16 H 0.107 0.893 17 C -0.156 4.156 18 C 0.057 3.943 19 N -0.336 5.336 20 C -0.363 4.363 21 H 0.107 0.893 22 C -0.261 4.261 23 N -0.604 5.604 24 Si 0.807 3.193 25 H -0.205 1.205 26 H -0.224 1.224 27 H -0.197 1.197 28 N -0.056 5.056 29 C -0.058 4.058 30 N -0.130 5.130 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.216 0.784 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.045 0.955 48 H 0.016 0.984 49 H 0.055 0.945 50 H 0.106 0.894 51 H 0.132 0.868 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.886 3.119 -26.036 26.673 hybrid contribution 0.102 0.109 2.223 2.228 sum -4.784 3.228 -23.813 24.502 Atomic orbital electron populations 1.21805 0.92951 1.01622 1.03322 1.19555 0.96325 0.95651 0.91353 1.21839 1.00922 0.93551 1.03649 1.22526 1.03130 0.89731 0.97323 1.22743 1.05516 1.00731 0.92244 1.21395 1.12289 0.90403 0.93414 1.17196 0.79837 0.81269 0.84223 1.90755 1.40480 1.40305 1.72988 1.47680 1.44060 1.27637 1.11813 1.22918 0.89403 0.92460 0.99699 1.21886 0.97390 1.03797 0.92639 1.21422 0.99242 0.97349 0.97015 1.20838 0.93723 0.96422 0.84461 0.98701 1.21994 0.96818 0.98586 0.79515 0.89298 1.22749 0.99380 0.98918 0.94532 1.21448 0.87588 0.93734 0.91496 1.44343 1.23006 1.64813 1.01452 1.19379 1.03476 1.29052 0.84345 0.89288 1.25690 0.98134 1.01557 1.00765 1.70173 1.19490 1.47333 1.23384 0.85148 0.77244 0.78416 0.78503 1.20473 1.22433 1.19722 1.45728 1.44894 1.10064 1.04878 1.22424 1.02087 0.78419 1.02861 1.73108 1.17858 1.19102 1.02922 0.91721 0.90147 0.93995 0.90187 0.93153 0.90239 0.91085 0.78366 0.88347 0.85462 0.86515 0.92567 0.91226 0.92474 0.91579 0.90385 0.95488 0.98365 0.94477 0.89438 0.86753 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.17 71.98 0.66 -0.87 16 2 C -0.01 -0.12 3.38 -11.54 -0.04 -0.15 16 3 C -0.14 -1.32 8.79 71.98 0.63 -0.68 16 4 C 0.03 0.59 6.13 43.05 0.26 0.85 16 5 C -0.18 -3.62 7.99 22.65 0.18 -3.44 16 6 C -0.05 -1.22 6.69 40.79 0.27 -0.95 16 7 C 0.59 18.46 7.64 86.59 0.66 19.12 16 8 O -0.57 -21.20 11.60 -4.12 -0.05 -21.24 16 9 N -0.58 -17.02 2.92 -796.86 -2.33 -19.35 16 10 C 0.08 1.46 5.30 86.03 0.46 1.92 16 11 C -0.12 -2.50 5.93 30.79 0.18 -2.31 16 12 C -0.11 -3.51 5.44 30.26 0.16 -3.35 16 13 C 0.15 6.33 2.59 45.32 0.12 6.45 16 14 H 0.00 -0.20 8.05 -2.39 -0.02 -0.22 16 15 C 0.14 5.01 3.27 45.86 0.15 5.16 16 16 H 0.09 3.23 8.13 -2.39 -0.02 3.21 16 17 C -0.12 -5.07 5.06 31.49 0.16 -4.91 16 18 C 0.18 9.67 5.46 86.87 0.47 10.14 16 19 N -0.61 -31.96 3.34 -671.52 -2.25 -34.20 16 20 C -0.23 -13.02 9.94 84.03 0.84 -12.18 16 21 H 0.09 4.63 7.33 -2.91 -0.02 4.61 16 22 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 23 N -0.95 -58.82 10.46 21.65 0.23 -58.59 16 24 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 N -0.27 -6.91 3.75 -356.02 -1.33 -8.25 16 29 C 0.08 1.76 10.88 127.77 1.39 3.15 16 30 N -0.30 -7.32 11.90 -47.50 -0.57 -7.88 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.07 0.52 7.37 -2.39 -0.02 0.50 16 38 H 0.20 2.60 5.07 -2.91 -0.01 2.59 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.13 1.97 3.64 -2.39 -0.01 1.96 16 41 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 44 H 0.06 1.91 7.73 -2.39 -0.02 1.89 16 45 H 0.07 2.74 8.14 -2.39 -0.02 2.73 16 46 H 0.08 3.55 6.04 -2.39 -0.01 3.54 16 47 H 0.03 1.56 7.19 -2.39 -0.02 1.54 16 48 H 0.00 -0.11 7.81 -2.39 -0.02 -0.13 16 49 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 50 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.10 2.40 6.41 -2.39 -0.02 2.38 16 Total: -1.00 -75.12 392.91 3.67 -71.44 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.91 Total: 15.71 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 7.03 Total: 14.45 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -6.25 Total: -128.28 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.05 Total: -21.24 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.12 3.67 -71.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049819266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.158 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds