Wall clock time and date at job start Wed Apr 1 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34944 * 126.04069 * 2 1 4 4 C 1.35309 * 107.74803 * 180.14789 * 3 2 1 5 5 C 1.50698 * 126.04044 * 179.87155 * 4 3 2 6 6 C 1.52993 * 109.47189 * 52.69573 * 5 4 3 7 7 C 1.53007 * 109.47167 * 292.69352 * 5 4 3 8 8 C 1.50703 * 109.47283 * 172.69722 * 5 4 3 9 9 O 1.21277 * 120.00085 * 124.74726 * 8 5 4 10 10 N 1.34778 * 119.99833 * 304.74373 * 8 5 4 11 11 C 1.46803 * 119.57634 * 356.06682 * 10 8 5 12 12 C 1.53461 * 107.60200 * 127.97452 * 11 10 8 13 13 C 1.52733 * 108.43963 * 58.06930 * 12 11 10 14 14 C 1.54524 * 110.41434 * 295.69237 * 13 12 11 15 15 H 1.08997 * 113.49166 * 291.36050 * 14 13 12 16 16 C 1.45117 * 119.57708 * 176.08213 * 10 8 5 17 17 H 1.09001 * 109.97151 * 348.96342 * 16 10 8 18 18 C 1.54425 * 111.60619 * 111.32954 * 16 10 8 19 19 C 1.55464 * 102.03261 * 155.95219 * 18 16 10 20 20 N 1.47120 * 107.60199 * 339.51701 * 19 18 16 21 21 C 1.36937 * 125.76677 * 176.63333 * 20 19 18 22 22 H 1.08007 * 119.99965 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00077 * 0.04466 * 21 20 19 24 24 N 1.31614 * 120.00064 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00023 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46900 * 59.99989 * 25 23 21 27 27 H 1.48498 * 109.47105 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47131 * 299.99760 * 25 23 21 29 29 C 1.39868 * 107.91881 * 359.60350 * 4 3 2 30 30 N 1.30838 * 108.20241 * 0.24594 * 29 4 3 31 31 H 1.08999 * 109.46929 * 270.26818 * 1 2 3 32 32 H 1.08996 * 109.46718 * 30.26607 * 1 2 3 33 33 H 1.08995 * 109.47055 * 150.26805 * 1 2 3 34 34 H 1.08002 * 126.12584 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.47627 * 184.39169 * 6 5 4 36 36 H 1.09006 * 109.47646 * 304.39050 * 6 5 4 37 37 H 1.09001 * 109.47689 * 64.39522 * 6 5 4 38 38 H 1.08996 * 109.46689 * 292.58532 * 7 5 4 39 39 H 1.08998 * 109.46593 * 52.58249 * 7 5 4 40 40 H 1.08999 * 109.47104 * 172.58024 * 7 5 4 41 41 H 1.08997 * 109.83486 * 8.44440 * 11 10 8 42 42 H 1.09000 * 109.82965 * 247.49707 * 11 10 8 43 43 H 1.08991 * 109.64575 * 177.75937 * 12 11 10 44 44 H 1.09007 * 109.63635 * 298.39008 * 12 11 10 45 45 H 1.08998 * 109.21097 * 56.57922 * 13 12 11 46 46 H 1.09007 * 109.20747 * 175.89123 * 13 12 11 47 47 H 1.08997 * 110.80815 * 274.81671 * 18 16 10 48 48 H 1.08997 * 110.81159 * 38.33668 * 18 16 10 49 49 H 1.09002 * 110.31946 * 219.64936 * 19 18 16 50 50 H 1.08997 * 109.23997 * 98.77227 * 19 18 16 51 51 H 0.96999 * 120.00205 * 180.02562 * 24 23 21 52 52 H 1.08004 * 125.89781 * 180.22520 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5451 -0.0073 6 6 4.6758 2.5534 1.1397 7 6 4.8542 2.2939 -1.3389 8 6 5.9984 0.6932 0.1704 9 8 6.8981 0.7507 -0.6408 10 7 6.0989 -0.1324 1.2309 11 6 5.0447 -0.1313 2.2526 12 6 4.5895 -1.5833 2.4512 13 6 5.8009 -2.4175 2.8625 14 6 6.8441 -2.4512 1.7231 15 1 6.5149 -3.0130 0.8490 16 6 7.2480 -1.0109 1.3484 17 1 7.8122 -1.0126 0.4158 18 6 8.1646 -0.5947 2.5194 19 6 8.8927 -1.9277 2.8508 20 7 8.0799 -3.0260 2.3054 21 6 8.4097 -4.3548 2.3307 22 1 7.7408 -5.0856 1.9005 23 6 9.6036 -4.7627 2.9097 24 7 10.4188 -3.8722 3.4338 25 14 10.0532 -6.5755 2.9449 26 1 10.1333 -7.0927 1.5552 27 1 11.3685 -6.7464 3.6127 28 1 9.0156 -7.3283 3.6943 29 6 3.5346 -0.7322 0.0038 30 7 2.2891 -1.1328 0.0058 31 1 -0.3633 0.0048 1.0277 32 1 -0.3632 0.8876 -0.5180 33 1 -0.3633 -0.8923 -0.5096 34 1 1.9283 2.1193 -0.0004 35 1 5.5221 3.2387 1.0901 36 1 3.7466 3.1169 1.0545 37 1 4.6932 2.0232 2.0919 38 1 5.0518 1.5844 -2.1424 39 1 3.9108 2.8054 -1.5296 40 1 5.6612 3.0251 -1.2930 41 1 4.2049 0.4770 1.9168 42 1 5.4378 0.2644 3.1891 43 1 3.8323 -1.6261 3.2340 44 1 4.1786 -1.9692 1.5182 45 1 6.2459 -1.9859 3.7590 46 1 5.4784 -3.4362 3.0779 47 1 8.8668 0.1778 2.2059 48 1 7.5748 -0.2601 3.3729 49 1 8.9971 -2.0440 3.9295 50 1 9.8764 -1.9260 2.3813 51 1 11.2532 -4.1571 3.8380 52 1 4.4054 -1.3711 0.0067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049829313.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:49 Heat of formation + Delta-G solvation = 99.077131 kcal Electronic energy + Delta-G solvation = -33283.396973 eV Core-core repulsion = 29286.565162 eV Total energy + Delta-G solvation = -3996.831811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.98755 -40.16709 -38.13211 -35.77055 -34.90829 -33.16161 -32.21620 -32.06531 -29.57281 -28.97089 -28.27776 -27.31064 -26.82341 -25.12720 -24.20835 -23.05293 -22.01756 -21.38169 -20.64110 -19.97557 -19.07200 -18.33416 -17.40809 -16.80833 -16.28557 -15.74674 -15.48220 -15.03635 -14.72046 -14.54606 -14.25655 -14.19484 -14.03117 -13.70558 -13.38426 -13.26080 -13.00800 -12.74685 -12.66034 -12.58128 -12.40324 -12.29490 -11.94487 -11.89066 -11.78572 -11.73380 -11.32155 -11.27230 -10.91147 -10.77352 -10.69566 -10.62748 -10.49293 -10.35971 -10.06626 -9.98470 -9.60792 -9.53315 -9.40944 -9.30191 -8.57089 -8.45191 -8.16165 -6.80385 -5.66290 -3.00140 1.70236 2.32363 2.62306 2.86907 3.26624 3.44420 3.48682 3.49697 4.25595 4.42340 4.53390 4.63807 4.75779 4.84251 4.94780 4.99574 5.07886 5.12073 5.19397 5.26981 5.37363 5.45487 5.48258 5.51387 5.57392 5.63534 5.66618 5.69021 5.72359 5.78857 5.86804 5.93137 5.97217 6.04476 6.14777 6.20445 6.22654 6.27760 6.39236 6.44121 6.47810 6.58395 6.68948 6.79375 6.82551 7.07095 7.13312 7.54300 7.60145 7.66120 7.73904 7.87653 8.28491 8.46760 9.25469 9.85196 10.51507 11.44741 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.003408 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.144097 B = 8214.428279 C = 9141.982205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.063 3.937 4 C -0.227 4.227 5 C 0.000 4.000 6 C -0.149 4.149 7 C -0.121 4.121 8 C 0.521 3.479 9 O -0.539 6.539 10 N -0.588 5.588 11 C 0.093 3.907 12 C -0.145 4.145 13 C -0.126 4.126 14 C 0.156 3.844 15 H 0.062 0.938 16 C 0.128 3.872 17 H 0.099 0.901 18 C -0.151 4.151 19 C 0.182 3.818 20 N -0.598 5.598 21 C -0.225 4.225 22 H 0.077 0.923 23 C -0.007 4.007 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.064 3.936 30 N -0.291 5.291 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.173 0.827 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.041 0.959 50 H 0.049 0.951 51 H 0.252 0.748 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.664 15.335 -4.417 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.083 4.083 4 C -0.239 4.239 5 C -0.005 4.005 6 C -0.207 4.207 7 C -0.178 4.178 8 C 0.309 3.691 9 O -0.416 6.416 10 N -0.319 5.319 11 C -0.029 4.029 12 C -0.184 4.184 13 C -0.166 4.166 14 C 0.047 3.953 15 H 0.080 0.920 16 C 0.023 3.977 17 H 0.117 0.883 18 C -0.191 4.191 19 C 0.056 3.944 20 N -0.322 5.322 21 C -0.354 4.354 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.122 4.122 30 N -0.112 5.112 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.190 0.810 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.063 0.937 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -20.921 14.185 -4.749 25.719 hybrid contribution 0.777 -0.305 0.325 0.896 sum -20.144 13.880 -4.424 24.860 Atomic orbital electron populations 1.21823 0.74314 1.04365 1.03304 1.48451 1.06546 1.03847 1.57210 1.22096 0.90427 0.93328 1.02494 1.19632 0.93394 0.93652 1.17256 1.19040 0.89638 0.93785 0.98035 1.22165 1.02571 0.98330 0.97591 1.21659 1.01299 0.99900 0.94977 1.20394 0.87843 0.80023 0.80882 1.90682 1.40852 1.66568 1.43502 1.47597 1.22736 1.39005 1.22578 1.22300 0.90709 0.98383 0.91511 1.22267 0.98689 0.95114 1.02299 1.22349 0.94836 0.99326 1.00112 1.21694 0.88571 0.90968 0.94039 0.91973 1.21817 0.85751 0.89724 1.00367 0.88277 1.23241 0.98579 1.00087 0.97146 1.21301 0.93250 0.81890 0.97911 1.44691 1.17522 1.02869 1.67137 1.18991 1.02442 0.81489 1.32457 0.90497 1.24782 0.97051 0.97698 1.00805 1.69947 1.11894 1.31428 1.43628 0.86213 0.77404 0.84620 0.77601 1.21187 1.21677 1.21250 1.24117 0.95532 0.94532 0.98017 1.77477 1.01366 1.07739 1.24621 0.90797 0.89669 0.89322 0.81019 0.91714 0.91696 0.90963 0.91789 0.92475 0.91875 0.88133 0.91787 0.91948 0.90516 0.91940 0.92390 0.92007 0.92417 0.94094 0.93231 0.93745 0.79519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.47 59.85 0.69 1.21 16 2 N -0.38 -3.53 4.01 -68.16 -0.27 -3.80 16 3 C 0.06 0.52 10.62 -17.23 -0.18 0.34 16 4 C -0.23 -2.46 2.90 -105.06 -0.30 -2.76 16 5 C 0.00 -0.01 0.67 -156.81 -0.11 -0.11 16 6 C -0.15 -1.32 8.02 37.15 0.30 -1.03 16 7 C -0.12 -1.28 7.82 37.16 0.29 -0.99 16 8 C 0.52 8.05 5.73 -10.98 -0.06 7.99 16 9 O -0.54 -10.36 15.26 5.56 0.08 -10.27 16 10 N -0.59 -9.03 1.94 -165.02 -0.32 -9.35 16 11 C 0.09 1.21 3.56 -3.64 -0.01 1.19 16 12 C -0.14 -2.04 5.46 -26.63 -0.15 -2.18 16 13 C -0.13 -2.26 5.11 -26.07 -0.13 -2.39 16 14 C 0.16 3.19 3.74 -65.56 -0.25 2.95 16 15 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 16 C 0.13 2.42 3.03 -67.29 -0.20 2.21 16 17 H 0.10 2.13 6.98 -51.93 -0.36 1.77 16 18 C -0.15 -2.96 6.16 -24.67 -0.15 -3.11 16 19 C 0.18 4.44 5.17 -2.39 -0.01 4.43 16 20 N -0.60 -15.08 2.89 -160.74 -0.46 -15.54 16 21 C -0.23 -6.26 10.29 -15.06 -0.16 -6.42 16 22 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 23 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 24 N -0.92 -27.22 10.33 55.49 0.57 -26.64 16 25 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.06 0.83 7.07 -17.37 -0.12 0.71 16 30 N -0.29 -3.73 12.58 30.63 0.39 -3.34 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.17 0.83 7.88 -52.49 -0.41 0.41 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.41 7.60 -51.93 -0.39 0.02 16 37 H 0.07 0.66 5.09 -51.93 -0.26 0.40 16 38 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 39 H 0.06 0.45 7.97 -51.93 -0.41 0.04 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.13 3.01 -51.93 -0.16 0.97 16 42 H 0.06 0.82 7.51 -51.93 -0.39 0.43 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.11 4.51 -51.93 -0.23 0.87 16 45 H 0.06 1.20 7.10 -51.93 -0.37 0.83 16 46 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.06 1.05 6.80 -51.93 -0.35 0.69 16 49 H 0.04 1.10 7.60 -51.93 -0.39 0.70 16 50 H 0.05 1.36 7.29 -51.93 -0.38 0.98 16 51 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 52 H 0.19 2.75 5.48 -52.48 -0.29 2.46 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -33.47 382.35 -8.11 -41.58 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.17 Total: 2.53 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.66 Total: 1.74 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.10 Total: -58.68 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.47 -8.11 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049829313.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.658 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds