Wall clock time and date at job start Wed Apr 1 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34944 * 126.04069 * 2 1 4 4 C 1.35309 * 107.74803 * 180.14789 * 3 2 1 5 5 C 1.50698 * 126.04044 * 179.87155 * 4 3 2 6 6 C 1.52993 * 109.47189 * 52.69573 * 5 4 3 7 7 C 1.53007 * 109.47167 * 292.69352 * 5 4 3 8 8 C 1.50703 * 109.47283 * 172.69722 * 5 4 3 9 9 O 1.21277 * 120.00085 * 124.74726 * 8 5 4 10 10 N 1.34778 * 119.99833 * 304.74373 * 8 5 4 11 11 C 1.46803 * 119.57634 * 356.06682 * 10 8 5 12 12 C 1.53461 * 107.60200 * 127.97452 * 11 10 8 13 13 C 1.52733 * 108.43963 * 58.06930 * 12 11 10 14 14 C 1.54524 * 110.41434 * 295.69237 * 13 12 11 15 15 H 1.08997 * 113.49166 * 291.36050 * 14 13 12 16 16 C 1.45117 * 119.57708 * 176.08213 * 10 8 5 17 17 H 1.09001 * 109.97151 * 348.96342 * 16 10 8 18 18 C 1.54425 * 111.60619 * 111.32954 * 16 10 8 19 19 C 1.55464 * 102.03261 * 155.95219 * 18 16 10 20 20 N 1.47120 * 107.60199 * 339.51701 * 19 18 16 21 21 C 1.36937 * 125.76677 * 176.63333 * 20 19 18 22 22 H 1.08007 * 119.99965 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00077 * 0.04466 * 21 20 19 24 24 N 1.31614 * 120.00064 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00023 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46900 * 59.99989 * 25 23 21 27 27 H 1.48498 * 109.47105 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47131 * 299.99760 * 25 23 21 29 29 C 1.39868 * 107.91881 * 359.60350 * 4 3 2 30 30 N 1.30838 * 108.20241 * 0.24594 * 29 4 3 31 31 H 1.08999 * 109.46929 * 270.26818 * 1 2 3 32 32 H 1.08996 * 109.46718 * 30.26607 * 1 2 3 33 33 H 1.08995 * 109.47055 * 150.26805 * 1 2 3 34 34 H 1.08002 * 126.12584 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.47627 * 184.39169 * 6 5 4 36 36 H 1.09006 * 109.47646 * 304.39050 * 6 5 4 37 37 H 1.09001 * 109.47689 * 64.39522 * 6 5 4 38 38 H 1.08996 * 109.46689 * 292.58532 * 7 5 4 39 39 H 1.08998 * 109.46593 * 52.58249 * 7 5 4 40 40 H 1.08999 * 109.47104 * 172.58024 * 7 5 4 41 41 H 1.08997 * 109.83486 * 8.44440 * 11 10 8 42 42 H 1.09000 * 109.82965 * 247.49707 * 11 10 8 43 43 H 1.08991 * 109.64575 * 177.75937 * 12 11 10 44 44 H 1.09007 * 109.63635 * 298.39008 * 12 11 10 45 45 H 1.08998 * 109.21097 * 56.57922 * 13 12 11 46 46 H 1.09007 * 109.20747 * 175.89123 * 13 12 11 47 47 H 1.08997 * 110.80815 * 274.81671 * 18 16 10 48 48 H 1.08997 * 110.81159 * 38.33668 * 18 16 10 49 49 H 1.09002 * 110.31946 * 219.64936 * 19 18 16 50 50 H 1.08997 * 109.23997 * 98.77227 * 19 18 16 51 51 H 0.96999 * 120.00205 * 180.02562 * 24 23 21 52 52 H 1.08004 * 125.89781 * 180.22520 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5451 -0.0073 6 6 4.6758 2.5534 1.1397 7 6 4.8542 2.2939 -1.3389 8 6 5.9984 0.6932 0.1704 9 8 6.8981 0.7507 -0.6408 10 7 6.0989 -0.1324 1.2309 11 6 5.0447 -0.1313 2.2526 12 6 4.5895 -1.5833 2.4512 13 6 5.8009 -2.4175 2.8625 14 6 6.8441 -2.4512 1.7231 15 1 6.5149 -3.0130 0.8490 16 6 7.2480 -1.0109 1.3484 17 1 7.8122 -1.0126 0.4158 18 6 8.1646 -0.5947 2.5194 19 6 8.8927 -1.9277 2.8508 20 7 8.0799 -3.0260 2.3054 21 6 8.4097 -4.3548 2.3307 22 1 7.7408 -5.0856 1.9005 23 6 9.6036 -4.7627 2.9097 24 7 10.4188 -3.8722 3.4338 25 14 10.0532 -6.5755 2.9449 26 1 10.1333 -7.0927 1.5552 27 1 11.3685 -6.7464 3.6127 28 1 9.0156 -7.3283 3.6943 29 6 3.5346 -0.7322 0.0038 30 7 2.2891 -1.1328 0.0058 31 1 -0.3633 0.0048 1.0277 32 1 -0.3632 0.8876 -0.5180 33 1 -0.3633 -0.8923 -0.5096 34 1 1.9283 2.1193 -0.0004 35 1 5.5221 3.2387 1.0901 36 1 3.7466 3.1169 1.0545 37 1 4.6932 2.0232 2.0919 38 1 5.0518 1.5844 -2.1424 39 1 3.9108 2.8054 -1.5296 40 1 5.6612 3.0251 -1.2930 41 1 4.2049 0.4770 1.9168 42 1 5.4378 0.2644 3.1891 43 1 3.8323 -1.6261 3.2340 44 1 4.1786 -1.9692 1.5182 45 1 6.2459 -1.9859 3.7590 46 1 5.4784 -3.4362 3.0779 47 1 8.8668 0.1778 2.2059 48 1 7.5748 -0.2601 3.3729 49 1 8.9971 -2.0440 3.9295 50 1 9.8764 -1.9260 2.3813 51 1 11.2532 -4.1571 3.8380 52 1 4.4054 -1.3711 0.0067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049829313.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:47 Heat of formation + Delta-G solvation = 78.000604 kcal Electronic energy + Delta-G solvation = -33284.310920 eV Core-core repulsion = 29286.565162 eV Total energy + Delta-G solvation = -3997.745758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.89410 -41.34637 -39.62372 -37.02069 -36.23275 -34.10338 -33.87332 -33.50387 -30.87260 -30.29096 -29.81916 -28.05359 -27.56576 -26.65580 -25.96395 -24.13984 -23.30296 -22.39692 -22.01839 -21.37613 -20.22869 -19.61215 -18.81078 -18.39283 -17.39403 -16.80279 -16.69775 -16.35834 -16.11404 -15.99491 -15.45864 -15.42621 -15.11637 -15.04646 -14.64390 -14.18545 -14.10460 -14.00720 -13.80511 -13.65546 -13.40770 -13.37482 -13.21850 -13.11047 -12.95467 -12.81436 -12.74603 -12.56698 -12.52861 -12.32443 -12.23032 -12.10368 -12.00158 -11.85670 -11.54701 -11.52046 -11.35663 -11.14459 -10.71112 -10.56284 -10.22351 -9.55938 -9.20546 -8.89201 -7.84276 -5.20224 1.01607 1.43894 1.47593 1.53577 1.59556 1.77102 1.80998 2.00864 2.49536 3.32477 3.39729 3.55803 3.63336 3.86100 3.92635 4.00639 4.06562 4.07581 4.12517 4.18018 4.22761 4.31961 4.35782 4.38018 4.55914 4.56498 4.60249 4.65620 4.79218 4.80479 4.83171 4.84928 4.88210 4.92191 4.96725 4.99934 5.05673 5.09566 5.12056 5.23047 5.32778 5.36499 5.39880 5.44096 5.54991 5.60311 5.63595 5.67607 5.73304 6.17717 6.22838 6.49904 6.76485 7.08599 7.22569 7.74627 8.40549 9.25398 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.003408 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.144097 B = 8214.428279 C = 9141.982205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.373 5.373 3 C 0.091 3.909 4 C -0.247 4.247 5 C 0.012 3.988 6 C -0.148 4.148 7 C -0.118 4.118 8 C 0.515 3.485 9 O -0.586 6.586 10 N -0.584 5.584 11 C 0.097 3.903 12 C -0.133 4.133 13 C -0.112 4.112 14 C 0.153 3.847 15 H 0.050 0.950 16 C 0.144 3.856 17 H 0.066 0.934 18 C -0.132 4.132 19 C 0.193 3.807 20 N -0.618 5.618 21 C -0.238 4.238 22 H 0.079 0.921 23 C -0.064 4.064 24 N -0.951 5.951 25 Si 0.978 3.022 26 H -0.280 1.280 27 H -0.294 1.294 28 H -0.276 1.276 29 C 0.047 3.953 30 N -0.327 5.327 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.222 0.778 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.130 0.870 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.012 0.988 50 H 0.008 0.992 51 H 0.247 0.753 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.947 17.924 -4.106 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.155 5.155 3 C -0.057 4.057 4 C -0.259 4.259 5 C 0.007 3.993 6 C -0.205 4.205 7 C -0.176 4.176 8 C 0.305 3.695 9 O -0.466 6.466 10 N -0.314 5.314 11 C -0.024 4.024 12 C -0.172 4.172 13 C -0.152 4.152 14 C 0.046 3.954 15 H 0.068 0.932 16 C 0.038 3.962 17 H 0.084 0.916 18 C -0.171 4.171 19 C 0.068 3.932 20 N -0.342 5.342 21 C -0.367 4.367 22 H 0.097 0.903 23 C -0.257 4.257 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.202 1.202 29 C -0.138 4.138 30 N -0.149 5.149 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.238 0.762 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.030 0.970 50 H 0.027 0.973 51 H 0.056 0.944 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.278 16.776 -4.440 30.661 hybrid contribution 1.998 -1.117 0.127 2.293 sum -23.279 15.659 -4.313 28.385 Atomic orbital electron populations 1.22220 0.71768 1.05897 1.04785 1.48810 1.07918 1.03216 1.55513 1.22704 0.88940 0.94877 0.99137 1.19573 0.94324 0.92451 1.19594 1.19003 0.87253 0.93493 0.99529 1.22209 1.04575 0.97691 0.96009 1.21678 1.03083 0.99171 0.93686 1.21385 0.88822 0.79692 0.79625 1.90660 1.42998 1.68035 1.44906 1.47566 1.22017 1.38244 1.23618 1.22525 0.90720 0.97947 0.91213 1.22178 0.97064 0.95068 1.02849 1.22104 0.95523 0.99381 0.98199 1.21848 0.87722 0.91482 0.94371 0.93224 1.21274 0.86903 0.89640 0.98353 0.91571 1.23049 0.98527 0.97417 0.98145 1.20983 0.92273 0.84384 0.95573 1.44937 1.19285 1.02502 1.67516 1.19355 1.02574 0.82924 1.31852 0.90268 1.25616 0.97153 1.01926 1.01047 1.70170 1.11998 1.33156 1.44638 0.85168 0.76891 0.79718 0.77650 1.20624 1.21979 1.20153 1.23770 0.95020 0.95449 0.99590 1.77414 1.01654 1.09901 1.25899 0.89317 0.86126 0.89892 0.76189 0.92107 0.87713 0.91047 0.94638 0.88676 0.92465 0.85266 0.90682 0.89605 0.90734 0.92919 0.93896 0.91388 0.90095 0.96958 0.97327 0.94417 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.47 127.77 1.47 1.97 16 2 N -0.37 -5.39 4.01 -369.57 -1.48 -6.87 16 3 C 0.09 1.02 10.62 83.54 0.89 1.91 16 4 C -0.25 -4.56 2.90 -20.15 -0.06 -4.62 16 5 C 0.01 0.23 0.67 -53.67 -0.04 0.19 16 6 C -0.15 -1.95 8.02 71.98 0.58 -1.37 16 7 C -0.12 -2.24 7.82 71.98 0.56 -1.67 16 8 C 0.52 15.86 5.73 87.66 0.50 16.36 16 9 O -0.59 -23.45 15.26 -3.02 -0.05 -23.50 16 10 N -0.58 -17.89 1.94 -794.39 -1.54 -19.43 16 11 C 0.10 2.30 3.56 86.48 0.31 2.61 16 12 C -0.13 -3.57 5.46 30.66 0.17 -3.40 16 13 C -0.11 -4.08 5.11 31.02 0.16 -3.92 16 14 C 0.15 6.59 3.74 45.59 0.17 6.76 16 15 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 16 C 0.14 5.71 3.03 46.14 0.14 5.85 16 17 H 0.07 3.07 6.98 -2.39 -0.02 3.05 16 18 C -0.13 -5.34 6.16 31.93 0.20 -5.14 16 19 C 0.19 10.07 5.17 87.11 0.45 10.52 16 20 N -0.62 -32.94 2.89 -662.48 -1.91 -34.85 16 21 C -0.24 -13.83 10.29 84.03 0.86 -12.96 16 22 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 23 C -0.06 -3.79 5.49 84.86 0.47 -3.33 16 24 N -0.95 -58.98 10.33 21.65 0.22 -58.75 16 25 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 27 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 29 C 0.05 1.16 7.07 85.24 0.60 1.76 16 30 N -0.33 -7.75 12.58 -57.02 -0.72 -8.47 16 31 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.22 0.26 7.88 -2.91 -0.02 0.24 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 0.59 7.60 -2.38 -0.02 0.57 16 37 H 0.07 0.97 5.09 -2.39 -0.01 0.96 16 38 H 0.03 0.86 7.94 -2.39 -0.02 0.84 16 39 H 0.09 1.05 7.97 -2.39 -0.02 1.03 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.13 2.44 3.01 -2.39 -0.01 2.43 16 42 H 0.07 1.67 7.51 -2.39 -0.02 1.66 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.13 4.51 -2.38 -0.01 2.11 16 45 H 0.05 2.02 7.10 -2.39 -0.02 2.00 16 46 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 47 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.08 2.89 6.80 -2.39 -0.02 2.88 16 49 H 0.01 0.70 7.60 -2.39 -0.02 0.68 16 50 H 0.01 0.50 7.29 -2.39 -0.02 0.48 16 51 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 52 H 0.16 4.78 5.48 -2.91 -0.02 4.76 16 Total: -1.00 -80.67 382.35 4.89 -75.77 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.92 Total: 15.13 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 7.42 Total: 11.52 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -5.44 Total: -128.38 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -80.67 4.89 -75.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049829313.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.773 kcal (2) G-P(sol) polarization free energy of solvation -80.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds