Wall clock time and date at job start Wed Apr 1 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47041 * 2 1 4 4 C 1.53005 * 109.47200 * 239.99973 * 2 1 3 5 5 C 1.50700 * 109.47370 * 119.99902 * 2 1 3 6 6 N 1.30453 * 125.98834 * 248.15119 * 5 2 1 7 7 N 1.39936 * 108.89452 * 180.25920 * 6 5 2 8 8 H 0.96994 * 125.75261 * 179.73236 * 7 6 5 9 9 C 1.34257 * 108.49132 * 359.75639 * 7 6 5 10 10 C 1.38041 * 107.42056 * 359.97438 * 9 7 6 11 11 C 1.47429 * 126.41679 * 179.97438 * 10 9 7 12 12 O 1.21602 * 120.00229 * 125.84428 * 11 10 9 13 13 N 1.34778 * 120.00034 * 305.84142 * 11 10 9 14 14 C 1.46796 * 119.57256 * 354.79510 * 13 11 10 15 15 C 1.53460 * 107.60294 * 232.01526 * 14 13 11 16 16 C 1.52736 * 108.44226 * 301.92942 * 15 14 13 17 17 C 1.53013 * 110.79568 * 63.76984 * 16 15 14 18 18 H 1.08999 * 111.38422 * 69.71906 * 17 16 15 19 19 C 1.45116 * 119.57394 * 174.77657 * 13 11 10 20 20 H 1.08997 * 109.97305 * 11.97726 * 19 13 11 21 21 C 1.54412 * 111.61115 * 248.68374 * 19 13 11 22 22 C 1.54547 * 102.36471 * 203.21409 * 21 19 13 23 23 N 1.47117 * 107.26331 * 22.02855 * 22 21 19 24 24 C 1.36945 * 125.76440 * 182.47651 * 23 22 21 25 25 H 1.08001 * 119.99717 * 179.68822 * 24 23 22 26 26 C 1.38809 * 119.99921 * 359.69948 * 24 23 22 27 27 N 1.31625 * 120.00212 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99872 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.47035 * 89.99734 * 28 26 24 30 30 H 1.48500 * 109.47143 * 209.99165 * 28 26 24 31 31 H 1.48498 * 109.47279 * 329.99595 * 28 26 24 32 32 H 1.09003 * 109.46846 * 294.13112 * 1 2 3 33 33 H 1.09002 * 109.47138 * 54.13448 * 1 2 3 34 34 H 1.08997 * 109.46971 * 174.13331 * 1 2 3 35 35 H 1.09002 * 109.46846 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46621 * 300.00055 * 3 2 1 37 37 H 1.08995 * 109.47060 * 60.00127 * 3 2 1 38 38 H 1.08994 * 109.46920 * 305.15931 * 4 2 1 39 39 H 1.09003 * 109.47007 * 65.16222 * 4 2 1 40 40 H 1.08998 * 109.46800 * 185.15778 * 4 2 1 41 41 H 1.08008 * 126.29157 * 179.97438 * 9 7 6 42 42 H 1.09003 * 109.83229 * 112.49152 * 14 13 11 43 43 H 1.09003 * 109.89094 * 351.57889 * 14 13 11 44 44 H 1.08998 * 109.64627 * 182.23872 * 15 14 13 45 45 H 1.09008 * 109.81144 * 61.71759 * 15 14 13 46 46 H 1.09003 * 109.20935 * 303.43849 * 16 15 14 47 47 H 1.08994 * 109.21196 * 184.10801 * 16 15 14 48 48 H 1.09000 * 110.81755 * 321.65794 * 21 19 13 49 49 H 1.08999 * 110.81187 * 85.18327 * 21 19 13 50 50 H 1.09003 * 109.99175 * 262.54720 * 22 21 19 51 51 H 1.09005 * 109.76708 * 141.37839 * 22 21 19 52 52 H 0.97003 * 119.99791 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 2.6583 -0.1578 2.2328 7 7 2.9651 -1.1454 3.1755 8 1 3.4327 -1.0034 4.0133 9 6 2.5036 -2.3227 2.7244 10 6 1.9051 -2.0910 1.5022 11 6 1.2601 -3.0971 0.6388 12 8 0.1157 -2.9314 0.2624 13 7 1.9388 -4.2004 0.2667 14 6 3.3545 -4.3370 0.6299 15 6 4.1332 -4.6619 -0.6520 16 6 3.5585 -5.9421 -1.2550 17 6 2.1027 -5.7370 -1.6791 18 1 2.0295 -5.0740 -2.5412 19 6 1.2604 -5.2382 -0.4875 20 1 0.2961 -4.8723 -0.8399 21 6 1.0846 -6.5252 0.3474 22 6 0.9366 -7.6098 -0.7436 23 7 1.5414 -7.0765 -1.9742 24 6 1.5749 -7.7087 -3.1885 25 1 2.0411 -7.2270 -4.0353 26 6 1.0096 -8.9684 -3.3310 27 7 0.4417 -9.5555 -2.2989 28 14 1.0547 -9.8303 -4.9877 29 1 2.2913 -10.6467 -5.0874 30 1 -0.1326 -10.7125 -5.1192 31 1 1.0414 -8.8173 -6.0733 32 1 -0.3633 0.4202 0.9379 33 1 -0.3633 0.6021 -0.8328 34 1 -0.3633 -1.0223 -0.1050 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.6032 -1.7187 -1.2966 39 1 1.7542 -0.1568 -2.1369 40 1 3.1261 -0.8019 -1.2042 41 1 2.5856 -3.2759 3.2256 42 1 3.4750 -5.1457 1.3507 43 1 3.7194 -3.4032 1.0577 44 1 5.1864 -4.8099 -0.4134 45 1 4.0305 -3.8431 -1.3642 46 1 3.6073 -6.7407 -0.5147 47 1 4.1494 -6.2249 -2.1262 48 1 1.9636 -6.7093 0.9652 49 1 0.1844 -6.4698 0.9595 50 1 -0.1181 -7.8268 -0.9127 51 1 1.4591 -8.5157 -0.4362 52 1 0.0470 -10.4360 -2.3985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049842490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:05 Heat of formation + Delta-G solvation = 62.579779 kcal Electronic energy + Delta-G solvation = -32822.553626 eV Core-core repulsion = 28824.139171 eV Total energy + Delta-G solvation = -3998.414455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 8.80 seconds Orbital eigenvalues (eV) -41.76325 -39.94223 -37.82398 -36.77298 -35.18523 -32.37094 -32.29678 -31.12751 -30.57270 -28.89022 -28.11530 -27.24094 -27.13639 -24.96230 -24.26058 -22.85102 -22.62454 -21.95118 -20.32086 -19.91172 -18.64379 -18.29049 -17.70515 -16.85944 -16.73682 -15.61134 -15.22016 -15.03479 -14.73739 -14.68317 -14.34390 -14.10288 -13.81595 -13.75120 -13.64930 -13.32160 -13.22138 -12.82591 -12.41155 -12.28649 -12.13045 -12.05110 -11.89459 -11.57740 -11.40885 -11.35099 -11.21395 -11.03228 -11.00338 -10.95037 -10.77940 -10.61836 -10.53157 -10.46319 -10.07013 -10.01037 -9.67075 -9.61857 -9.58343 -9.51202 -8.81240 -8.60372 -8.20292 -6.84119 -5.69673 -3.03509 1.48567 2.18636 2.51096 3.02433 3.35839 3.41629 3.47032 3.48640 4.23158 4.50146 4.50340 4.80444 4.83742 4.96828 5.02360 5.16335 5.20298 5.30447 5.37664 5.38475 5.43004 5.51297 5.61595 5.62149 5.67417 5.69890 5.73979 5.79556 5.88780 5.89794 5.97853 6.01744 6.03838 6.07383 6.14114 6.24137 6.32738 6.33691 6.34889 6.38696 6.51136 6.54835 6.65115 6.79686 6.91936 7.03869 7.09883 7.39891 7.56767 7.61926 7.70274 7.84072 8.25114 8.47610 9.22275 9.82050 10.47925 11.41554 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.003067 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.776991 B = 9127.066513 C = 9545.407748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.012 3.988 3 C -0.135 4.135 4 C -0.141 4.141 5 C 0.139 3.861 6 N -0.294 5.294 7 N -0.467 5.467 8 H 0.442 0.558 9 C 0.094 3.906 10 C -0.269 4.269 11 C 0.591 3.409 12 O -0.533 6.533 13 N -0.587 5.587 14 C 0.107 3.893 15 C -0.132 4.132 16 C -0.129 4.129 17 C 0.156 3.844 18 H 0.059 0.941 19 C 0.132 3.868 20 H 0.103 0.897 21 C -0.151 4.151 22 C 0.181 3.819 23 N -0.598 5.598 24 C -0.225 4.225 25 H 0.078 0.922 26 C -0.007 4.007 27 N -0.921 5.921 28 Si 0.911 3.089 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.184 0.816 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.051 0.949 51 H 0.041 0.959 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 17.389 11.441 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 C -0.192 4.192 4 C -0.199 4.199 5 C -0.029 4.029 6 N -0.116 5.116 7 N -0.171 5.171 8 H 0.286 0.714 9 C -0.057 4.057 10 C -0.284 4.284 11 C 0.378 3.622 12 O -0.410 6.410 13 N -0.318 5.318 14 C -0.015 4.015 15 C -0.171 4.171 16 C -0.169 4.169 17 C 0.048 3.952 18 H 0.077 0.923 19 C 0.028 3.972 20 H 0.121 0.879 21 C -0.191 4.191 22 C 0.056 3.944 23 N -0.323 5.323 24 C -0.353 4.353 25 H 0.095 0.905 26 C -0.203 4.203 27 N -0.569 5.569 28 Si 0.741 3.259 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.201 0.799 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.251 18.301 11.611 22.854 hybrid contribution 0.191 -1.452 -0.443 1.530 sum 7.442 16.849 11.168 21.540 Atomic orbital electron populations 1.22131 0.92303 1.05423 1.01174 1.19067 0.96480 0.94344 0.89106 1.21805 1.01120 0.94429 1.01886 1.21913 1.00835 1.01309 0.95853 1.22300 0.94799 0.90898 0.94942 1.77109 1.21873 1.12380 1.00241 1.46060 1.46288 1.05221 1.19581 0.71389 1.23027 0.95523 0.91757 0.95390 1.20220 1.14310 0.94860 0.98984 1.17337 0.85222 0.80256 0.79337 1.90685 1.17741 1.76291 1.56332 1.47515 1.10878 1.19012 1.54417 1.21840 0.80651 1.01519 0.97535 1.21908 0.98666 0.99675 0.96836 1.22115 0.98406 0.95698 1.00696 1.21349 0.90971 0.88741 0.94148 0.92260 1.21769 0.97013 0.86392 0.92014 0.87880 1.23113 1.00461 0.96468 0.99037 1.21159 0.98547 0.91896 0.82792 1.44717 1.66198 1.13843 1.07522 1.19032 1.31695 0.98248 0.86365 0.90464 1.24784 1.00598 0.97396 0.97567 1.69959 1.42837 1.15696 1.28383 0.86137 0.77055 0.79441 0.83230 1.21710 1.21724 1.20693 0.93194 0.92350 0.88633 0.92547 0.92258 0.92265 0.91445 0.91664 0.92735 0.79890 0.91614 0.90184 0.91600 0.91818 0.91933 0.92253 0.92318 0.92096 0.93103 0.94115 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.41 37.16 0.31 -1.60 16 2 C 0.01 0.14 0.84 -155.65 -0.13 0.01 16 3 C -0.13 -1.36 7.98 37.16 0.30 -1.06 16 4 C -0.14 -1.69 8.15 37.16 0.30 -1.39 16 5 C 0.14 1.74 5.65 -82.02 -0.46 1.27 16 6 N -0.29 -3.40 11.94 33.90 0.40 -3.00 16 7 N -0.47 -3.86 7.29 30.85 0.22 -3.63 16 8 H 0.44 2.00 8.96 -182.73 -1.64 0.36 16 9 C 0.09 0.85 10.19 -16.56 -0.17 0.68 16 10 C -0.27 -3.36 4.53 -105.07 -0.48 -3.84 16 11 C 0.59 8.97 5.46 -12.52 -0.07 8.90 16 12 O -0.53 -9.78 13.11 5.28 0.07 -9.71 16 13 N -0.59 -8.62 2.73 -166.28 -0.45 -9.07 16 14 C 0.11 1.27 5.65 -3.64 -0.02 1.24 16 15 C -0.13 -1.69 6.11 -26.63 -0.16 -1.85 16 16 C -0.13 -2.19 5.10 -26.86 -0.14 -2.33 16 17 C 0.16 3.10 3.59 -66.35 -0.24 2.86 16 18 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 19 C 0.13 2.40 3.12 -67.30 -0.21 2.19 16 20 H 0.10 2.13 6.93 -51.93 -0.36 1.77 16 21 C -0.15 -2.81 6.08 -25.18 -0.15 -2.96 16 22 C 0.18 4.29 5.19 -2.89 -0.02 4.28 16 23 N -0.60 -14.69 2.91 -162.20 -0.47 -15.16 16 24 C -0.23 -6.12 10.29 -15.06 -0.15 -6.27 16 25 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 26 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 27 N -0.92 -26.70 10.33 55.49 0.57 -26.13 16 28 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 31 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.45 5.03 -51.93 -0.26 1.19 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.07 0.97 5.86 -51.93 -0.30 0.66 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 43 H 0.08 0.81 5.39 -51.93 -0.28 0.53 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 46 H 0.06 1.13 7.13 -51.93 -0.37 0.76 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 0.99 6.81 -51.93 -0.35 0.64 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.05 1.36 7.31 -51.93 -0.38 0.98 16 51 H 0.04 1.06 7.59 -51.93 -0.39 0.67 16 52 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -32.34 391.42 -10.13 -42.47 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -9.77 Total: 1.56 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.58 Total: -0.16 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.34 -10.13 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049842490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.053 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.81 seconds