Wall clock time and date at job start Wed Apr 1 2020 05:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47041 * 2 1 4 4 C 1.53005 * 109.47200 * 239.99973 * 2 1 3 5 5 C 1.50700 * 109.47370 * 119.99902 * 2 1 3 6 6 N 1.30453 * 125.98834 * 248.15119 * 5 2 1 7 7 N 1.39936 * 108.89452 * 180.25920 * 6 5 2 8 8 H 0.96994 * 125.75261 * 179.73236 * 7 6 5 9 9 C 1.34257 * 108.49132 * 359.75639 * 7 6 5 10 10 C 1.38041 * 107.42056 * 359.97438 * 9 7 6 11 11 C 1.47429 * 126.41679 * 179.97438 * 10 9 7 12 12 O 1.21602 * 120.00229 * 125.84428 * 11 10 9 13 13 N 1.34778 * 120.00034 * 305.84142 * 11 10 9 14 14 C 1.46796 * 119.57256 * 354.79510 * 13 11 10 15 15 C 1.53460 * 107.60294 * 232.01526 * 14 13 11 16 16 C 1.52736 * 108.44226 * 301.92942 * 15 14 13 17 17 C 1.53013 * 110.79568 * 63.76984 * 16 15 14 18 18 H 1.08999 * 111.38422 * 69.71906 * 17 16 15 19 19 C 1.45116 * 119.57394 * 174.77657 * 13 11 10 20 20 H 1.08997 * 109.97305 * 11.97726 * 19 13 11 21 21 C 1.54412 * 111.61115 * 248.68374 * 19 13 11 22 22 C 1.54547 * 102.36471 * 203.21409 * 21 19 13 23 23 N 1.47117 * 107.26331 * 22.02855 * 22 21 19 24 24 C 1.36945 * 125.76440 * 182.47651 * 23 22 21 25 25 H 1.08001 * 119.99717 * 179.68822 * 24 23 22 26 26 C 1.38809 * 119.99921 * 359.69948 * 24 23 22 27 27 N 1.31625 * 120.00212 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99872 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.47035 * 89.99734 * 28 26 24 30 30 H 1.48500 * 109.47143 * 209.99165 * 28 26 24 31 31 H 1.48498 * 109.47279 * 329.99595 * 28 26 24 32 32 H 1.09003 * 109.46846 * 294.13112 * 1 2 3 33 33 H 1.09002 * 109.47138 * 54.13448 * 1 2 3 34 34 H 1.08997 * 109.46971 * 174.13331 * 1 2 3 35 35 H 1.09002 * 109.46846 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46621 * 300.00055 * 3 2 1 37 37 H 1.08995 * 109.47060 * 60.00127 * 3 2 1 38 38 H 1.08994 * 109.46920 * 305.15931 * 4 2 1 39 39 H 1.09003 * 109.47007 * 65.16222 * 4 2 1 40 40 H 1.08998 * 109.46800 * 185.15778 * 4 2 1 41 41 H 1.08008 * 126.29157 * 179.97438 * 9 7 6 42 42 H 1.09003 * 109.83229 * 112.49152 * 14 13 11 43 43 H 1.09003 * 109.89094 * 351.57889 * 14 13 11 44 44 H 1.08998 * 109.64627 * 182.23872 * 15 14 13 45 45 H 1.09008 * 109.81144 * 61.71759 * 15 14 13 46 46 H 1.09003 * 109.20935 * 303.43849 * 16 15 14 47 47 H 1.08994 * 109.21196 * 184.10801 * 16 15 14 48 48 H 1.09000 * 110.81755 * 321.65794 * 21 19 13 49 49 H 1.08999 * 110.81187 * 85.18327 * 21 19 13 50 50 H 1.09003 * 109.99175 * 262.54720 * 22 21 19 51 51 H 1.09005 * 109.76708 * 141.37839 * 22 21 19 52 52 H 0.97003 * 119.99791 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 2.6583 -0.1578 2.2328 7 7 2.9651 -1.1454 3.1755 8 1 3.4327 -1.0034 4.0133 9 6 2.5036 -2.3227 2.7244 10 6 1.9051 -2.0910 1.5022 11 6 1.2601 -3.0971 0.6388 12 8 0.1157 -2.9314 0.2624 13 7 1.9388 -4.2004 0.2667 14 6 3.3545 -4.3370 0.6299 15 6 4.1332 -4.6619 -0.6520 16 6 3.5585 -5.9421 -1.2550 17 6 2.1027 -5.7370 -1.6791 18 1 2.0295 -5.0740 -2.5412 19 6 1.2604 -5.2382 -0.4875 20 1 0.2961 -4.8723 -0.8399 21 6 1.0846 -6.5252 0.3474 22 6 0.9366 -7.6098 -0.7436 23 7 1.5414 -7.0765 -1.9742 24 6 1.5749 -7.7087 -3.1885 25 1 2.0411 -7.2270 -4.0353 26 6 1.0096 -8.9684 -3.3310 27 7 0.4417 -9.5555 -2.2989 28 14 1.0547 -9.8303 -4.9877 29 1 2.2913 -10.6467 -5.0874 30 1 -0.1326 -10.7125 -5.1192 31 1 1.0414 -8.8173 -6.0733 32 1 -0.3633 0.4202 0.9379 33 1 -0.3633 0.6021 -0.8328 34 1 -0.3633 -1.0223 -0.1050 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.6032 -1.7187 -1.2966 39 1 1.7542 -0.1568 -2.1369 40 1 3.1261 -0.8019 -1.2042 41 1 2.5856 -3.2759 3.2256 42 1 3.4750 -5.1457 1.3507 43 1 3.7194 -3.4032 1.0577 44 1 5.1864 -4.8099 -0.4134 45 1 4.0305 -3.8431 -1.3642 46 1 3.6073 -6.7407 -0.5147 47 1 4.1494 -6.2249 -2.1262 48 1 1.9636 -6.7093 0.9652 49 1 0.1844 -6.4698 0.9595 50 1 -0.1181 -7.8268 -0.9127 51 1 1.4591 -8.5157 -0.4362 52 1 0.0470 -10.4360 -2.3985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049842490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:01 Heat of formation + Delta-G solvation = 42.549155 kcal Electronic energy + Delta-G solvation = -32823.422219 eV Core-core repulsion = 28824.139171 eV Total energy + Delta-G solvation = -3999.283048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.70 seconds Orbital eigenvalues (eV) -42.63360 -41.23059 -39.18836 -37.70154 -36.64872 -34.17220 -33.66741 -31.95983 -31.68942 -30.55149 -29.61893 -28.14868 -28.03376 -26.52168 -25.88255 -23.76204 -23.68784 -23.19702 -21.91770 -21.22207 -19.81434 -19.19816 -18.91062 -18.59836 -17.87105 -16.78272 -16.74406 -16.25535 -16.06035 -15.82454 -15.66873 -15.19684 -15.15516 -14.95413 -14.70132 -14.64461 -14.25984 -14.06844 -13.96507 -13.68634 -13.41677 -13.19216 -13.07624 -12.94189 -12.78243 -12.60091 -12.54114 -12.33753 -12.27348 -12.21842 -12.06863 -12.04649 -11.91518 -11.90360 -11.59168 -11.49956 -11.36200 -11.13412 -10.75053 -10.68669 -10.46133 -9.70146 -9.46772 -8.85580 -7.81834 -5.17029 0.72702 1.23259 1.46445 1.48263 1.56697 1.78873 1.97212 2.23398 2.52208 3.35498 3.38435 3.60176 3.69703 3.82598 3.93491 4.05187 4.07487 4.09288 4.11474 4.19080 4.20381 4.38405 4.41949 4.48536 4.57449 4.63841 4.64264 4.72307 4.77341 4.80864 4.85673 4.91015 4.91860 5.01685 5.02412 5.05951 5.09791 5.11489 5.20949 5.23525 5.38758 5.40788 5.44090 5.48298 5.53908 5.60911 5.68939 5.77107 5.78119 6.21401 6.34404 6.52475 6.64399 7.12142 7.32438 7.78478 8.43687 9.28000 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.003067 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.776991 B = 9127.066513 C = 9545.407748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.009 3.991 3 C -0.127 4.127 4 C -0.135 4.135 5 C 0.128 3.872 6 N -0.310 5.310 7 N -0.446 5.446 8 H 0.461 0.539 9 C 0.124 3.876 10 C -0.302 4.302 11 C 0.595 3.405 12 O -0.573 6.573 13 N -0.584 5.584 14 C 0.107 3.893 15 C -0.123 4.123 16 C -0.117 4.117 17 C 0.152 3.848 18 H 0.044 0.956 19 C 0.151 3.849 20 H 0.070 0.930 21 C -0.132 4.132 22 C 0.192 3.808 23 N -0.619 5.619 24 C -0.234 4.234 25 H 0.079 0.921 26 C -0.065 4.065 27 N -0.950 5.950 28 Si 0.975 3.025 29 H -0.285 1.285 30 H -0.296 1.296 31 H -0.271 1.271 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.223 0.777 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.008 0.992 51 H 0.012 0.988 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.164 19.183 13.311 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.007 3.993 3 C -0.184 4.184 4 C -0.193 4.193 5 C -0.040 4.040 6 N -0.132 5.132 7 N -0.152 5.152 8 H 0.309 0.691 9 C -0.030 4.030 10 C -0.317 4.317 11 C 0.384 3.616 12 O -0.453 6.453 13 N -0.315 5.315 14 C -0.014 4.014 15 C -0.161 4.161 16 C -0.157 4.157 17 C 0.045 3.955 18 H 0.063 0.937 19 C 0.045 3.955 20 H 0.088 0.912 21 C -0.171 4.171 22 C 0.066 3.934 23 N -0.343 5.343 24 C -0.363 4.363 25 H 0.097 0.903 26 C -0.258 4.258 27 N -0.599 5.599 28 Si 0.804 3.196 29 H -0.212 1.212 30 H -0.223 1.223 31 H -0.196 1.196 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.239 0.761 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.086 0.914 50 H 0.026 0.974 51 H 0.030 0.970 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.977 20.163 13.516 26.244 hybrid contribution -0.641 -1.948 -1.000 2.281 sum 9.336 18.215 12.516 23.992 Atomic orbital electron populations 1.22046 0.93313 1.03707 1.01514 1.19081 0.95686 0.95449 0.89125 1.21730 1.01159 0.93162 1.02369 1.21845 1.00982 0.99874 0.96611 1.22340 0.95270 0.91031 0.95348 1.77071 1.22206 1.13375 1.00531 1.46088 1.45094 1.04471 1.19595 0.69087 1.23482 0.92757 0.93035 0.93679 1.20034 1.17013 0.94200 1.00478 1.17711 0.84679 0.80269 0.78927 1.90679 1.19799 1.77010 1.57855 1.47467 1.12084 1.18055 1.53883 1.22112 0.78235 1.03731 0.97363 1.21863 1.00401 0.96817 0.97045 1.21884 0.95735 0.97912 1.00145 1.21537 0.93133 0.86339 0.94521 0.93743 1.21203 0.95623 0.87073 0.91632 0.91220 1.22919 1.02067 0.94499 0.97583 1.20848 0.95432 0.92792 0.84293 1.44971 1.66670 1.15589 1.07119 1.19377 1.30874 0.98488 0.87590 0.90285 1.25582 1.00971 0.98331 1.00884 1.70175 1.43989 1.15620 1.30162 0.85129 0.76674 0.78244 0.79599 1.21151 1.22313 1.19647 0.93385 0.91211 0.91499 0.92289 0.91070 0.92490 0.94280 0.90750 0.92031 0.76097 0.89459 0.87475 0.88301 0.92103 0.92705 0.93711 0.89531 0.91353 0.97373 0.96999 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.41 71.98 0.61 -3.11 16 2 C 0.01 0.20 0.84 -52.92 -0.04 0.15 16 3 C -0.13 -2.32 7.98 71.98 0.57 -1.75 16 4 C -0.14 -3.16 8.15 71.98 0.59 -2.57 16 5 C 0.13 2.94 5.65 43.51 0.25 3.18 16 6 N -0.31 -6.22 11.94 -46.67 -0.56 -6.78 16 7 N -0.45 -5.43 7.29 -56.32 -0.41 -5.84 16 8 H 0.46 1.94 8.96 -213.43 -1.91 0.02 16 9 C 0.12 1.67 10.19 84.28 0.86 2.53 16 10 C -0.30 -6.81 4.53 -20.15 -0.09 -6.91 16 11 C 0.59 17.49 5.46 86.66 0.47 17.97 16 12 O -0.57 -21.65 13.11 -4.04 -0.05 -21.71 16 13 N -0.58 -16.27 2.73 -798.25 -2.18 -18.45 16 14 C 0.11 2.10 5.65 86.48 0.49 2.58 16 15 C -0.12 -2.75 6.11 30.66 0.19 -2.56 16 16 C -0.12 -3.85 5.10 30.51 0.16 -3.69 16 17 C 0.15 6.14 3.59 45.08 0.16 6.30 16 18 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 19 C 0.15 5.52 3.12 46.14 0.14 5.66 16 20 H 0.07 3.04 6.93 -2.39 -0.02 3.02 16 21 C -0.13 -4.87 6.08 31.60 0.19 -4.67 16 22 C 0.19 9.52 5.19 86.79 0.45 9.97 16 23 N -0.62 -31.59 2.91 -667.09 -1.94 -33.53 16 24 C -0.23 -13.17 10.29 84.03 0.86 -12.30 16 25 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 26 C -0.06 -3.71 5.49 84.86 0.47 -3.25 16 27 N -0.95 -57.54 10.33 21.65 0.22 -57.32 16 28 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 29 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 30 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 31 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 2.11 5.03 -2.39 -0.01 2.10 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 38 H 0.04 1.13 5.86 -2.39 -0.01 1.12 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.22 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.09 1.42 7.53 -2.39 -0.02 1.40 16 43 H 0.11 1.61 5.39 -2.39 -0.01 1.60 16 44 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.05 1.90 7.13 -2.39 -0.02 1.88 16 47 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.09 2.73 6.81 -2.39 -0.02 2.72 16 49 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.01 0.46 7.31 -2.39 -0.02 0.44 16 51 H 0.01 0.65 7.59 -2.38 -0.02 0.63 16 52 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -76.10 391.42 2.44 -73.66 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.98 Total: 14.07 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 6.32 Total: 7.54 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -4.87 Total: -121.91 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -76.10 2.44 -73.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049842490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.212 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.70 seconds