Wall clock time and date at job start Wed Apr 1 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34947 * 126.04119 * 2 1 4 4 C 1.35318 * 107.74801 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.03906 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46996 * 66.28916 * 5 4 3 7 7 C 1.53001 * 109.47427 * 306.28978 * 5 4 3 8 8 C 1.50701 * 109.47332 * 186.28536 * 5 4 3 9 9 O 1.21274 * 120.00278 * 237.25808 * 8 5 4 10 10 N 1.34781 * 119.99600 * 57.25802 * 8 5 4 11 11 C 1.47669 * 134.45593 * 175.91722 * 10 8 5 12 12 C 1.53506 * 85.97879 * 204.29298 * 11 10 8 13 13 C 1.47662 * 134.45707 * 355.88802 * 10 8 5 14 14 C 1.52669 * 113.57368 * 222.23457 * 12 11 10 15 15 C 1.53338 * 109.11683 * 286.16474 * 14 12 11 16 16 N 1.46878 * 108.75965 * 307.58410 * 15 14 12 17 17 C 1.36937 * 120.47558 * 235.52752 * 16 15 14 18 18 H 1.07998 * 120.00579 * 149.99952 * 17 16 15 19 19 C 1.38811 * 119.99725 * 330.00416 * 17 16 15 20 20 N 1.31619 * 120.00440 * 157.68985 * 19 17 16 21 21 Si 1.86811 * 120.00007 * 337.68622 * 19 17 16 22 22 H 1.48498 * 109.46970 * 90.68792 * 21 19 17 23 23 H 1.48502 * 109.47071 * 210.68696 * 21 19 17 24 24 H 1.48500 * 109.46977 * 330.68831 * 21 19 17 25 25 C 1.46887 * 119.05718 * 55.54931 * 16 15 14 26 26 C 1.52676 * 113.56967 * 91.01031 * 12 11 10 27 27 C 1.39874 * 107.91655 * 0.26209 * 4 3 2 28 28 N 1.30829 * 108.20480 * 359.55470 * 27 4 3 29 29 H 1.09008 * 109.46871 * 90.00348 * 1 2 3 30 30 H 1.08997 * 109.47757 * 210.00482 * 1 2 3 31 31 H 1.08999 * 109.47345 * 330.00922 * 1 2 3 32 32 H 1.07996 * 126.12369 * 0.03336 * 3 2 1 33 33 H 1.09008 * 109.47242 * 183.59393 * 6 5 4 34 34 H 1.08997 * 109.47252 * 303.59464 * 6 5 4 35 35 H 1.08995 * 109.47099 * 63.59825 * 6 5 4 36 36 H 1.08998 * 109.46813 * 297.71856 * 7 5 4 37 37 H 1.08994 * 109.47283 * 57.72023 * 7 5 4 38 38 H 1.09003 * 109.46951 * 177.72326 * 7 5 4 39 39 H 1.09001 * 113.78902 * 90.02628 * 11 10 8 40 40 H 1.09001 * 113.79177 * 318.56326 * 11 10 8 41 41 H 1.08994 * 113.79478 * 41.43738 * 13 10 8 42 42 H 1.08996 * 113.78744 * 269.96676 * 13 10 8 43 43 H 1.09001 * 109.52561 * 46.05430 * 14 12 11 44 44 H 1.08991 * 109.53271 * 166.26964 * 14 12 11 45 45 H 1.08998 * 109.58529 * 187.80602 * 15 14 12 46 46 H 1.08994 * 109.59124 * 67.37057 * 15 14 12 47 47 H 0.96997 * 120.00499 * 180.02562 * 20 19 17 48 48 H 1.09006 * 109.59423 * 184.66496 * 25 16 15 49 49 H 1.09004 * 109.58926 * 64.23454 * 25 16 15 50 50 H 1.08997 * 109.53066 * 193.72821 * 26 12 11 51 51 H 1.09005 * 109.53115 * 313.94535 * 26 12 11 52 52 H 1.08001 * 125.89124 * 179.74233 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7680 1.5451 -0.0013 6 6 4.8447 2.3139 1.3193 7 6 4.6840 2.5359 -1.1641 8 6 5.9995 0.6907 -0.1574 9 8 6.8773 0.7336 0.6784 10 7 6.1254 -0.1212 -1.2258 11 6 7.1909 -1.0116 -1.7283 12 6 6.5487 -0.8221 -3.1096 13 6 5.2530 -0.4772 -2.3627 14 6 6.4610 -2.1103 -3.9241 15 6 7.8590 -2.4765 -4.4367 16 7 8.4289 -1.3122 -5.1273 17 6 8.8659 -1.4172 -6.4208 18 1 8.8249 -0.5596 -7.0760 19 6 9.3614 -2.6260 -6.8900 20 7 9.3696 -2.8770 -8.1820 21 14 10.0169 -3.8966 -5.6876 22 1 8.9165 -4.8067 -5.2804 23 1 11.0952 -4.6837 -6.3381 24 1 10.5602 -3.2093 -4.4885 25 6 8.5239 -0.0336 -4.4105 26 6 7.1304 0.3490 -3.8978 27 6 3.5346 -0.7322 -0.0070 28 7 2.2891 -1.1328 -0.0006 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9282 2.1192 0.0005 33 1 5.6942 2.9966 1.2935 34 1 3.9259 2.8825 1.4626 35 1 4.9689 1.6105 2.1425 36 1 4.6702 1.9892 -2.1070 37 1 3.7724 3.1265 -1.0732 38 1 5.5497 3.1979 -1.1407 39 1 7.1264 -2.0317 -1.3496 40 1 8.1922 -0.5885 -1.6470 41 1 4.7140 0.3705 -2.7857 42 1 4.6126 -1.3385 -2.1726 43 1 6.0817 -2.9147 -3.2939 44 1 5.7901 -1.9616 -4.7701 45 1 7.7859 -3.3136 -5.1311 46 1 8.4962 -2.7509 -3.5961 47 1 9.7155 -3.7218 -8.5098 48 1 8.8890 0.7387 -5.0875 49 1 9.2077 -0.1369 -3.5680 50 1 6.4812 0.5777 -4.7430 51 1 7.2076 1.2220 -3.2496 52 1 4.4053 -1.3711 -0.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050715696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:21 Heat of formation + Delta-G solvation = 109.059369 kcal Electronic energy + Delta-G solvation = -32350.333624 eV Core-core repulsion = 28353.934675 eV Total energy + Delta-G solvation = -3996.398949 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.83925 -40.63673 -38.71241 -36.11174 -35.47608 -33.22911 -32.43295 -30.81746 -30.38645 -29.67602 -27.71016 -27.33978 -26.98005 -26.09885 -24.11947 -23.18245 -22.69604 -21.45191 -21.12816 -20.41134 -18.67461 -18.11707 -17.67296 -16.53984 -16.31684 -15.78626 -15.70973 -15.61741 -15.14566 -14.89614 -14.49044 -14.14379 -13.82352 -13.70407 -13.60305 -13.33488 -13.28765 -13.12302 -12.93302 -12.86118 -12.68693 -12.43696 -12.38613 -12.19616 -11.99622 -11.86151 -11.71474 -11.61134 -11.52715 -11.22338 -10.74107 -10.70941 -10.55079 -10.48112 -10.03211 -9.94483 -9.86405 -9.67278 -9.52758 -9.33464 -8.66082 -8.58996 -8.53288 -6.92341 -5.95862 -3.31483 1.58801 2.19947 2.50096 2.70091 2.89765 3.33305 3.50272 3.54433 4.12477 4.27249 4.50877 4.54065 4.55133 4.67573 4.75946 4.85163 4.87111 4.92646 4.99839 5.01785 5.05275 5.20814 5.31988 5.37197 5.40725 5.43211 5.48272 5.50550 5.54584 5.62945 5.70738 5.78614 5.81815 5.87730 5.93757 5.97172 6.03481 6.06435 6.16775 6.20048 6.33024 6.33177 6.38411 6.46921 6.65404 6.67784 6.70055 6.71606 6.94733 7.40604 7.80686 8.00261 8.23075 8.34567 8.96662 9.73262 10.12354 11.20223 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.002980 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.774101 B = 9393.547294 C = 9989.505516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.066 3.934 4 C -0.223 4.223 5 C 0.005 3.995 6 C -0.122 4.122 7 C -0.140 4.140 8 C 0.547 3.453 9 O -0.544 6.544 10 N -0.634 5.634 11 C 0.114 3.886 12 C -0.077 4.077 13 C 0.108 3.892 14 C -0.120 4.120 15 C 0.130 3.870 16 N -0.604 5.604 17 C -0.261 4.261 18 H 0.083 0.917 19 C 0.027 3.973 20 N -0.906 5.906 21 Si 0.878 3.122 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.149 3.851 26 C -0.108 4.108 27 C 0.058 3.942 28 N -0.292 5.292 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.023 0.977 47 H 0.262 0.738 48 H 0.064 0.936 49 H 0.022 0.978 50 H 0.068 0.932 51 H 0.056 0.944 52 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.578 9.961 17.163 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.158 5.158 3 C -0.081 4.081 4 C -0.235 4.235 5 C 0.000 4.000 6 C -0.179 4.179 7 C -0.197 4.197 8 C 0.336 3.664 9 O -0.421 6.421 10 N -0.369 5.369 11 C -0.008 4.008 12 C -0.078 4.078 13 C -0.015 4.015 14 C -0.160 4.160 15 C 0.004 3.996 16 N -0.327 5.327 17 C -0.389 4.389 18 H 0.101 0.899 19 C -0.173 4.173 20 N -0.549 5.549 21 Si 0.708 3.292 22 H -0.214 1.214 23 H -0.231 1.231 24 H -0.196 1.196 25 C 0.023 3.977 26 C -0.147 4.147 27 C -0.128 4.128 28 N -0.113 5.113 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.040 0.960 50 H 0.086 0.914 51 H 0.075 0.925 52 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -19.032 9.013 17.645 27.473 hybrid contribution 0.790 -0.213 0.591 1.009 sum -18.242 8.800 18.235 27.253 Atomic orbital electron populations 1.21857 0.74130 1.04435 1.03498 1.48458 1.06640 1.03819 1.56896 1.22129 0.90447 0.93339 1.02144 1.19657 0.93395 0.93514 1.16961 1.19000 0.89267 0.93661 0.98029 1.21674 1.01584 0.99662 0.95021 1.21949 1.02460 0.98170 0.97138 1.20031 0.87661 0.79581 0.79090 1.90689 1.42924 1.67677 1.40796 1.50036 1.19909 1.42924 1.24025 1.23292 0.93167 0.93687 0.90684 1.22006 0.94305 0.97836 0.93682 1.23512 0.94715 0.99854 0.83418 1.21951 1.00446 0.94491 0.99070 1.21296 0.91156 0.91428 0.95680 1.44314 1.70324 1.05772 1.12318 1.18885 1.36194 0.98798 0.85047 0.89940 1.25337 0.98811 0.97743 0.95364 1.69858 1.47995 1.24388 1.12627 0.87000 0.78766 0.81593 0.81883 1.21422 1.23112 1.19618 1.20925 0.92788 0.88976 0.95009 1.21746 0.99564 0.94857 0.98499 1.23861 0.95191 0.94470 0.99307 1.77424 1.01452 1.08014 1.24428 0.90606 0.89288 0.89537 0.80952 0.91758 0.92330 0.91986 0.91443 0.91751 0.91786 0.90033 0.89924 0.90136 0.89846 0.92439 0.91041 0.90814 0.95905 0.92777 0.91746 0.95984 0.91378 0.92503 0.80466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.47 59.85 0.69 1.16 16 2 N -0.38 -3.35 4.01 -68.16 -0.27 -3.62 16 3 C 0.07 0.53 10.71 -17.22 -0.18 0.35 16 4 C -0.22 -2.27 4.17 -105.06 -0.44 -2.71 16 5 C 0.00 0.05 0.70 -156.81 -0.11 -0.06 16 6 C -0.12 -1.20 7.73 37.16 0.29 -0.91 16 7 C -0.14 -1.23 8.24 37.16 0.31 -0.92 16 8 C 0.55 7.63 5.95 -10.98 -0.07 7.56 16 9 O -0.54 -9.58 16.70 5.56 0.09 -9.48 16 10 N -0.63 -8.29 2.60 -180.23 -0.47 -8.76 16 11 C 0.11 1.61 7.62 -3.15 -0.02 1.59 16 12 C -0.08 -1.09 0.77 -154.42 -0.12 -1.21 16 13 C 0.11 1.27 5.39 -3.16 -0.02 1.25 16 14 C -0.12 -1.92 5.26 -26.73 -0.14 -2.06 16 15 C 0.13 2.69 4.12 -3.66 -0.02 2.67 16 16 N -0.60 -13.76 2.69 -172.21 -0.46 -14.23 16 17 C -0.26 -7.12 9.97 -15.06 -0.15 -7.27 16 18 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 19 C 0.03 0.76 5.17 -17.43 -0.09 0.67 16 20 N -0.91 -27.45 13.97 55.49 0.78 -26.68 16 21 Si 0.88 22.08 24.51 -169.99 -4.17 17.91 16 22 H -0.29 -6.90 6.56 56.52 0.37 -6.53 16 23 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 24 H -0.27 -6.77 7.02 56.52 0.40 -6.37 16 25 C 0.15 2.82 6.38 -3.66 -0.02 2.80 16 26 C -0.11 -1.64 5.21 -26.72 -0.14 -1.78 16 27 C 0.06 0.68 8.75 -17.37 -0.15 0.53 16 28 N -0.29 -3.50 12.58 30.62 0.39 -3.11 16 29 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.17 0.81 7.95 -52.49 -0.42 0.39 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 35 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 36 H 0.07 0.64 5.50 -51.93 -0.29 0.35 16 37 H 0.06 0.42 7.74 -51.93 -0.40 0.02 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 40 H 0.08 1.28 7.41 -51.93 -0.38 0.90 16 41 H 0.08 0.89 5.93 -51.93 -0.31 0.58 16 42 H 0.08 0.95 6.82 -51.93 -0.35 0.60 16 43 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.70 4.72 -51.93 -0.25 1.45 16 46 H 0.02 0.47 7.35 -51.93 -0.38 0.09 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.06 1.23 7.92 -51.93 -0.41 0.82 16 49 H 0.02 0.42 7.50 -51.93 -0.39 0.03 16 50 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 52 H 0.18 2.18 6.53 -52.49 -0.34 1.83 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -34.14 394.38 -7.13 -41.27 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.57 Total: -0.89 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.39 Total: 1.64 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.04 Total: -56.39 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.17 Total: 17.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.14 -7.13 -41.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050715696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.331 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds