Wall clock time and date at job start Wed Apr 1 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34947 * 126.04119 * 2 1 4 4 C 1.35318 * 107.74801 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.03906 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46996 * 66.28916 * 5 4 3 7 7 C 1.53001 * 109.47427 * 306.28978 * 5 4 3 8 8 C 1.50701 * 109.47332 * 186.28536 * 5 4 3 9 9 O 1.21274 * 120.00278 * 237.25808 * 8 5 4 10 10 N 1.34781 * 119.99600 * 57.25802 * 8 5 4 11 11 C 1.47669 * 134.45593 * 175.91722 * 10 8 5 12 12 C 1.53506 * 85.97879 * 204.29298 * 11 10 8 13 13 C 1.47662 * 134.45707 * 355.88802 * 10 8 5 14 14 C 1.52669 * 113.57368 * 222.23457 * 12 11 10 15 15 C 1.53338 * 109.11683 * 286.16474 * 14 12 11 16 16 N 1.46878 * 108.75965 * 307.58410 * 15 14 12 17 17 C 1.36937 * 120.47558 * 235.52752 * 16 15 14 18 18 H 1.07998 * 120.00579 * 149.99952 * 17 16 15 19 19 C 1.38811 * 119.99725 * 330.00416 * 17 16 15 20 20 N 1.31619 * 120.00440 * 157.68985 * 19 17 16 21 21 Si 1.86811 * 120.00007 * 337.68622 * 19 17 16 22 22 H 1.48498 * 109.46970 * 90.68792 * 21 19 17 23 23 H 1.48502 * 109.47071 * 210.68696 * 21 19 17 24 24 H 1.48500 * 109.46977 * 330.68831 * 21 19 17 25 25 C 1.46887 * 119.05718 * 55.54931 * 16 15 14 26 26 C 1.52676 * 113.56967 * 91.01031 * 12 11 10 27 27 C 1.39874 * 107.91655 * 0.26209 * 4 3 2 28 28 N 1.30829 * 108.20480 * 359.55470 * 27 4 3 29 29 H 1.09008 * 109.46871 * 90.00348 * 1 2 3 30 30 H 1.08997 * 109.47757 * 210.00482 * 1 2 3 31 31 H 1.08999 * 109.47345 * 330.00922 * 1 2 3 32 32 H 1.07996 * 126.12369 * 0.03336 * 3 2 1 33 33 H 1.09008 * 109.47242 * 183.59393 * 6 5 4 34 34 H 1.08997 * 109.47252 * 303.59464 * 6 5 4 35 35 H 1.08995 * 109.47099 * 63.59825 * 6 5 4 36 36 H 1.08998 * 109.46813 * 297.71856 * 7 5 4 37 37 H 1.08994 * 109.47283 * 57.72023 * 7 5 4 38 38 H 1.09003 * 109.46951 * 177.72326 * 7 5 4 39 39 H 1.09001 * 113.78902 * 90.02628 * 11 10 8 40 40 H 1.09001 * 113.79177 * 318.56326 * 11 10 8 41 41 H 1.08994 * 113.79478 * 41.43738 * 13 10 8 42 42 H 1.08996 * 113.78744 * 269.96676 * 13 10 8 43 43 H 1.09001 * 109.52561 * 46.05430 * 14 12 11 44 44 H 1.08991 * 109.53271 * 166.26964 * 14 12 11 45 45 H 1.08998 * 109.58529 * 187.80602 * 15 14 12 46 46 H 1.08994 * 109.59124 * 67.37057 * 15 14 12 47 47 H 0.96997 * 120.00499 * 180.02562 * 20 19 17 48 48 H 1.09006 * 109.59423 * 184.66496 * 25 16 15 49 49 H 1.09004 * 109.58926 * 64.23454 * 25 16 15 50 50 H 1.08997 * 109.53066 * 193.72821 * 26 12 11 51 51 H 1.09005 * 109.53115 * 313.94535 * 26 12 11 52 52 H 1.08001 * 125.89124 * 179.74233 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7680 1.5451 -0.0013 6 6 4.8447 2.3139 1.3193 7 6 4.6840 2.5359 -1.1641 8 6 5.9995 0.6907 -0.1574 9 8 6.8773 0.7336 0.6784 10 7 6.1254 -0.1212 -1.2258 11 6 7.1909 -1.0116 -1.7283 12 6 6.5487 -0.8221 -3.1096 13 6 5.2530 -0.4772 -2.3627 14 6 6.4610 -2.1103 -3.9241 15 6 7.8590 -2.4765 -4.4367 16 7 8.4289 -1.3122 -5.1273 17 6 8.8659 -1.4172 -6.4208 18 1 8.8249 -0.5596 -7.0760 19 6 9.3614 -2.6260 -6.8900 20 7 9.3696 -2.8770 -8.1820 21 14 10.0169 -3.8966 -5.6876 22 1 8.9165 -4.8067 -5.2804 23 1 11.0952 -4.6837 -6.3381 24 1 10.5602 -3.2093 -4.4885 25 6 8.5239 -0.0336 -4.4105 26 6 7.1304 0.3490 -3.8978 27 6 3.5346 -0.7322 -0.0070 28 7 2.2891 -1.1328 -0.0006 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9282 2.1192 0.0005 33 1 5.6942 2.9966 1.2935 34 1 3.9259 2.8825 1.4626 35 1 4.9689 1.6105 2.1425 36 1 4.6702 1.9892 -2.1070 37 1 3.7724 3.1265 -1.0732 38 1 5.5497 3.1979 -1.1407 39 1 7.1264 -2.0317 -1.3496 40 1 8.1922 -0.5885 -1.6470 41 1 4.7140 0.3705 -2.7857 42 1 4.6126 -1.3385 -2.1726 43 1 6.0817 -2.9147 -3.2939 44 1 5.7901 -1.9616 -4.7701 45 1 7.7859 -3.3136 -5.1311 46 1 8.4962 -2.7509 -3.5961 47 1 9.7155 -3.7218 -8.5098 48 1 8.8890 0.7387 -5.0875 49 1 9.2077 -0.1369 -3.5680 50 1 6.4812 0.5777 -4.7430 51 1 7.2076 1.2220 -3.2496 52 1 4.4053 -1.3711 -0.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050715696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:20 Heat of formation + Delta-G solvation = 86.924974 kcal Electronic energy + Delta-G solvation = -32351.293443 eV Core-core repulsion = 28353.934675 eV Total energy + Delta-G solvation = -3997.358768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.63219 -41.66606 -39.86043 -37.68697 -36.33200 -34.31108 -33.81665 -32.37433 -31.93625 -30.33802 -28.88704 -28.16195 -27.78054 -27.00433 -25.80827 -24.48862 -23.80218 -22.62868 -22.20706 -21.27307 -19.76185 -19.40113 -18.67147 -18.10756 -17.43188 -17.10390 -16.72887 -16.52023 -16.30491 -15.90211 -15.69589 -15.35169 -15.16875 -15.08154 -14.77834 -14.43740 -14.29830 -14.04339 -13.94572 -13.84796 -13.65382 -13.45665 -13.41417 -13.20435 -13.13604 -13.09617 -12.96925 -12.64215 -12.50782 -12.47434 -12.25314 -12.17290 -12.02039 -11.64756 -11.44455 -11.40364 -11.34093 -11.24482 -10.69862 -10.47070 -10.35476 -9.66572 -9.32659 -8.84599 -8.15779 -5.46488 0.95453 1.31109 1.43066 1.51927 1.56709 1.74792 1.76121 1.88782 2.43564 3.07844 3.28740 3.34608 3.44336 3.59315 3.82439 3.90925 4.02083 4.07663 4.11831 4.18096 4.25136 4.30938 4.38655 4.46745 4.50218 4.50754 4.55038 4.63460 4.73132 4.74053 4.75593 4.78534 4.79688 4.83215 4.87520 4.87837 4.96293 4.99234 5.03780 5.08330 5.16315 5.19509 5.26709 5.30033 5.33289 5.42620 5.51623 5.57743 5.92505 6.15837 6.16367 6.70564 6.76415 6.97146 7.16756 7.66473 8.07890 9.04423 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.002980 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.774101 B = 9393.547294 C = 9989.505516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.374 5.374 3 C 0.085 3.915 4 C -0.240 4.240 5 C 0.014 3.986 6 C -0.119 4.119 7 C -0.137 4.137 8 C 0.541 3.459 9 O -0.589 6.589 10 N -0.630 5.630 11 C 0.108 3.892 12 C -0.076 4.076 13 C 0.127 3.873 14 C -0.109 4.109 15 C 0.124 3.876 16 N -0.617 5.617 17 C -0.246 4.246 18 H 0.051 0.949 19 C -0.029 4.029 20 N -0.954 5.954 21 Si 0.938 3.062 22 H -0.269 1.269 23 H -0.313 1.313 24 H -0.268 1.268 25 C 0.145 3.855 26 C -0.094 4.094 27 C 0.043 3.957 28 N -0.328 5.328 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.215 0.785 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.028 0.972 47 H 0.261 0.739 48 H 0.054 0.946 49 H 0.026 0.974 50 H 0.067 0.933 51 H 0.073 0.927 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.744 11.404 19.179 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.156 5.156 3 C -0.063 4.063 4 C -0.252 4.252 5 C 0.010 3.990 6 C -0.177 4.177 7 C -0.194 4.194 8 C 0.332 3.668 9 O -0.470 6.470 10 N -0.363 5.363 11 C -0.014 4.014 12 C -0.077 4.077 13 C 0.006 3.994 14 C -0.148 4.148 15 C -0.001 4.001 16 N -0.341 5.341 17 C -0.376 4.376 18 H 0.069 0.931 19 C -0.224 4.224 20 N -0.600 5.600 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.242 1.242 24 H -0.193 1.193 25 C 0.020 3.980 26 C -0.132 4.132 27 C -0.142 4.142 28 N -0.150 5.150 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.231 0.769 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.044 0.956 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.243 10.455 19.692 31.494 hybrid contribution 1.715 -0.576 -0.013 1.810 sum -20.528 9.879 19.679 30.104 Atomic orbital electron populations 1.22220 0.71804 1.05972 1.04729 1.48805 1.07950 1.03273 1.55559 1.22682 0.89377 0.94720 0.99502 1.19628 0.94110 0.92693 1.18786 1.18954 0.87615 0.93417 0.99049 1.21677 1.02888 0.99159 0.93951 1.21968 1.03870 0.97763 0.95845 1.20782 0.88263 0.79418 0.78296 1.90664 1.44837 1.69106 1.42348 1.50034 1.19702 1.42433 1.24178 1.23292 0.92830 0.94453 0.90860 1.21901 0.96104 0.96479 0.93221 1.23420 0.93400 1.00804 0.81820 1.21809 0.97166 0.96338 0.99521 1.21346 0.93876 0.89917 0.94948 1.44439 1.70702 1.07717 1.11257 1.18836 1.34702 0.97500 0.86585 0.93147 1.25898 0.99846 1.00057 0.96601 1.69975 1.50282 1.25259 1.14511 0.86014 0.78108 0.79561 0.79625 1.19500 1.24154 1.19285 1.21058 0.95357 0.87079 0.94521 1.21561 0.96970 0.95917 0.98789 1.23730 0.94929 0.95246 1.00291 1.77357 1.01891 1.09980 1.25803 0.89485 0.89600 0.86257 0.76853 0.92640 0.89043 0.94219 0.91914 0.88552 0.92380 0.89105 0.91515 0.88501 0.88865 0.89702 0.91545 0.93297 0.95362 0.92999 0.92694 0.95626 0.91445 0.90805 0.82028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.47 127.77 1.47 1.97 16 2 N -0.37 -5.33 4.01 -369.57 -1.48 -6.81 16 3 C 0.08 0.98 10.71 83.54 0.89 1.88 16 4 C -0.24 -4.16 4.17 -20.15 -0.08 -4.24 16 5 C 0.01 0.26 0.70 -53.67 -0.04 0.22 16 6 C -0.12 -2.08 7.73 71.98 0.56 -1.53 16 7 C -0.14 -1.90 8.24 71.98 0.59 -1.31 16 8 C 0.54 14.50 5.95 87.66 0.52 15.02 16 9 O -0.59 -20.83 16.70 -3.01 -0.05 -20.88 16 10 N -0.63 -15.47 2.60 -842.51 -2.19 -17.66 16 11 C 0.11 2.92 7.62 86.32 0.66 3.58 16 12 C -0.08 -2.00 0.77 -52.03 -0.04 -2.04 16 13 C 0.13 2.67 5.39 86.31 0.47 3.13 16 14 C -0.11 -3.29 5.26 30.60 0.16 -3.13 16 15 C 0.12 5.00 4.12 86.42 0.36 5.36 16 16 N -0.62 -28.16 2.69 -698.75 -1.88 -30.03 16 17 C -0.25 -13.79 9.97 84.03 0.84 -12.96 16 18 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 19 C -0.03 -1.68 5.17 84.86 0.44 -1.24 16 20 N -0.95 -59.73 13.97 21.65 0.30 -59.42 16 21 Si 0.94 46.47 24.51 68.60 1.68 48.15 16 22 H -0.27 -12.40 6.56 99.48 0.65 -11.74 16 23 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 24 H -0.27 -12.96 7.02 99.48 0.70 -12.26 16 25 C 0.14 5.44 6.38 86.42 0.55 5.99 16 26 C -0.09 -2.71 5.21 30.60 0.16 -2.55 16 27 C 0.04 0.94 8.75 85.24 0.75 1.69 16 28 N -0.33 -7.22 12.58 -57.02 -0.72 -7.94 16 29 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.21 0.56 7.95 -2.91 -0.02 0.54 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.09 0.96 8.03 -2.39 -0.02 0.94 16 35 H 0.04 0.86 8.04 -2.39 -0.02 0.84 16 36 H 0.06 0.94 5.50 -2.39 -0.01 0.92 16 37 H 0.10 0.73 7.74 -2.39 -0.02 0.71 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 2.29 8.07 -2.39 -0.02 2.27 16 40 H 0.07 2.03 7.41 -2.39 -0.02 2.01 16 41 H 0.10 1.78 5.93 -2.39 -0.01 1.77 16 42 H 0.09 1.86 6.82 -2.39 -0.02 1.85 16 43 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.05 2.22 4.72 -2.39 -0.01 2.21 16 46 H 0.03 1.12 7.35 -2.39 -0.02 1.10 16 47 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.05 2.13 7.92 -2.38 -0.02 2.11 16 49 H 0.03 0.96 7.50 -2.38 -0.02 0.94 16 50 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.07 1.92 8.01 -2.38 -0.02 1.90 16 52 H 0.16 3.88 6.53 -2.91 -0.02 3.86 16 Total: -1.00 -78.12 394.38 4.76 -73.36 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.84 Total: 11.40 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 8.24 Total: 9.83 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -5.96 Total: -121.86 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.68 Total: 48.15 kcal Total: -78.12 4.76 -73.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050715696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.285 kcal (2) G-P(sol) polarization free energy of solvation -78.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds