Wall clock time and date at job start Wed Apr 1 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47023 * 2 1 4 4 C 1.50702 * 109.47304 * 119.99752 * 2 1 3 5 5 O 1.21284 * 119.99919 * 3.39984 * 4 2 1 6 6 N 1.34775 * 119.99999 * 183.39945 * 4 2 1 7 7 C 1.46929 * 120.70397 * 354.30106 * 6 4 2 8 8 C 1.53180 * 108.93161 * 234.14082 * 7 6 4 9 9 C 1.53166 * 109.27963 * 304.78788 * 8 7 6 10 10 C 1.52235 * 109.65537 * 60.16643 * 9 8 7 11 11 C 1.54477 * 110.28983 * 178.01281 * 10 9 8 12 12 C 1.55035 * 101.53005 * 276.21021 * 11 10 9 13 13 N 1.47478 * 104.90412 * 323.65801 * 12 11 10 14 14 C 1.36933 * 125.66224 * 204.03061 * 13 12 11 15 15 H 1.08007 * 120.00675 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.00129 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99701 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00545 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47407 * 89.99691 * 18 16 14 20 20 H 1.48492 * 109.47505 * 210.00456 * 18 16 14 21 21 H 1.48511 * 109.46997 * 330.00004 * 18 16 14 22 22 C 1.47190 * 108.67991 * 24.01227 * 13 12 11 23 23 C 1.47083 * 120.70217 * 174.28793 * 6 4 2 24 24 C 1.50698 * 109.47194 * 239.99816 * 2 1 3 25 25 C 1.34673 * 126.59147 * 249.98871 * 24 2 1 26 26 N 1.34126 * 108.01869 * 179.87213 * 25 24 2 27 27 C 1.30496 * 109.25743 * 0.39525 * 26 25 24 28 28 N 1.35046 * 108.69982 * 359.75831 * 27 26 25 29 29 H 0.97000 * 126.39384 * 179.97438 * 28 27 26 30 30 H 1.09005 * 109.46971 * 295.11775 * 1 2 3 31 31 H 1.08995 * 109.47263 * 55.12472 * 1 2 3 32 32 H 1.09003 * 109.47207 * 175.12298 * 1 2 3 33 33 H 1.09005 * 109.46788 * 185.48351 * 3 2 1 34 34 H 1.09000 * 109.46599 * 305.47288 * 3 2 1 35 35 H 1.08993 * 109.47480 * 65.47967 * 3 2 1 36 36 H 1.09001 * 109.55697 * 114.30846 * 7 6 4 37 37 H 1.09001 * 109.64926 * 354.03642 * 7 6 4 38 38 H 1.09001 * 109.50902 * 184.84185 * 8 7 6 39 39 H 1.09001 * 109.53522 * 64.74116 * 8 7 6 40 40 H 1.09004 * 109.43389 * 300.11377 * 9 8 7 41 41 H 1.09004 * 109.41292 * 180.21120 * 9 8 7 42 42 H 1.09003 * 111.01466 * 158.14701 * 11 10 9 43 43 H 1.09001 * 111.04702 * 34.28579 * 11 10 9 44 44 H 1.08999 * 110.35201 * 204.79695 * 12 11 10 45 45 H 1.09005 * 110.44256 * 82.56050 * 12 11 10 46 46 H 0.97004 * 120.00252 * 180.02562 * 17 16 14 47 47 H 1.08996 * 109.91463 * 117.82861 * 22 13 12 48 48 H 1.09003 * 109.90947 * 239.10484 * 22 13 12 49 49 H 1.09002 * 109.58088 * 7.75487 * 23 6 4 50 50 H 1.09006 * 109.57493 * 247.36235 * 23 6 4 51 51 H 1.08004 * 125.98840 * 0.02754 * 25 24 2 52 52 H 1.08000 * 125.65189 * 179.73168 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2460 -1.2249 1.9972 6 7 3.3555 -0.7739 1.4789 7 6 4.3277 -0.2664 0.5011 8 6 5.3362 -1.3743 0.1821 9 6 5.9730 -1.8688 1.4844 10 6 4.8933 -2.4198 2.4054 11 6 5.5255 -2.9685 3.7037 12 6 5.9453 -4.3950 3.2652 13 7 4.8787 -4.8393 2.3486 14 6 4.5535 -6.1407 2.0734 15 1 3.7518 -6.3630 1.3846 16 6 5.2542 -7.1744 2.6796 17 7 6.2308 -6.9036 3.5193 18 14 4.8102 -8.9497 2.3047 19 1 5.6050 -9.4242 1.1435 20 1 5.1092 -9.7953 3.4881 21 1 3.3629 -9.0409 1.9842 22 6 4.2215 -3.6518 1.7792 23 6 3.8569 -1.3524 2.7349 24 6 2.0323 -0.7104 -1.2304 25 6 2.6488 -1.9071 -1.2710 26 7 2.9323 -2.1845 -2.5523 27 6 2.5225 -1.2015 -3.3064 28 7 1.9550 -0.2608 -2.5209 29 1 1.5656 0.5771 -2.8162 30 1 -0.3633 0.4362 0.9305 31 1 -0.3633 0.5876 -0.8430 32 1 -0.3634 -1.0240 -0.0874 33 1 3.1256 1.4440 -0.0982 34 1 1.5988 1.9838 -0.8369 35 1 1.7590 1.9272 0.9349 36 1 4.8505 0.5938 0.9190 37 1 3.8096 0.0293 -0.4112 38 1 6.1115 -0.9823 -0.4762 39 1 4.8252 -2.2018 -0.3101 40 1 6.4817 -1.0400 1.9769 41 1 6.6940 -2.6548 1.2595 42 1 4.7924 -3.0070 4.5094 43 1 6.3939 -2.3781 3.9962 44 1 6.0019 -5.0562 4.1299 45 1 6.9036 -4.3674 2.7466 46 1 6.7207 -7.6258 3.9427 47 1 4.3539 -3.6371 0.6974 48 1 3.1598 -3.6611 2.0257 49 1 3.0307 -1.8029 3.2849 50 1 4.3171 -0.5704 3.3390 51 1 2.8731 -2.5346 -0.4211 52 1 2.6212 -1.1486 -4.3805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054228694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:44 Heat of formation + Delta-G solvation = 63.362401 kcal Electronic energy + Delta-G solvation = -33528.513649 eV Core-core repulsion = 29530.133131 eV Total energy + Delta-G solvation = -3998.380518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 19.24 seconds Orbital eigenvalues (eV) -42.57919 -40.47240 -38.61501 -35.92525 -35.41875 -32.96105 -32.45453 -31.78872 -30.14133 -29.04737 -28.49643 -27.48442 -25.89418 -25.52032 -23.92539 -22.99831 -22.20957 -21.33180 -21.07648 -20.17319 -19.30015 -18.27844 -17.91636 -16.80896 -16.49547 -15.91430 -15.35225 -15.19211 -14.86821 -14.66529 -14.43420 -14.22383 -13.88030 -13.83954 -13.66773 -13.30529 -13.22536 -13.10123 -12.80131 -12.63806 -12.35566 -12.15068 -12.01109 -11.93691 -11.73415 -11.49476 -11.43148 -10.92660 -10.83224 -10.81013 -10.70770 -10.53198 -10.12785 -10.05206 -10.04544 -10.02407 -9.81766 -9.67853 -9.56746 -9.33786 -8.53628 -8.46173 -8.39603 -6.69230 -5.53892 -2.93790 1.82417 2.46406 2.95737 3.07528 3.09368 3.48790 3.53598 3.55969 4.18656 4.29574 4.58314 4.60035 4.64614 4.75124 4.88367 5.10276 5.11279 5.16912 5.19606 5.26599 5.35309 5.37618 5.45073 5.46782 5.49470 5.58578 5.62860 5.64280 5.76484 5.81117 5.94754 5.96480 5.98912 5.99949 6.02876 6.13132 6.22665 6.40662 6.47015 6.54337 6.59461 6.62763 6.71666 6.80578 6.95949 7.07668 7.17525 7.47870 7.61870 7.75760 7.95844 7.96450 8.20684 8.47780 9.34748 9.95663 10.61214 11.50261 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.003781 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.703072 B = 7403.799053 C = 8089.925266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.003 4.003 3 C -0.155 4.155 4 C 0.531 3.469 5 O -0.529 6.529 6 N -0.599 5.599 7 C 0.099 3.901 8 C -0.141 4.141 9 C -0.098 4.098 10 C -0.083 4.083 11 C -0.135 4.135 12 C 0.156 3.844 13 N -0.602 5.602 14 C -0.215 4.215 15 H 0.076 0.924 16 C -0.013 4.013 17 N -0.924 5.924 18 Si 0.911 3.089 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.151 3.849 23 C 0.128 3.872 24 C -0.024 4.024 25 C -0.002 4.002 26 N -0.482 5.482 27 C 0.184 3.816 28 N -0.564 5.564 29 H 0.417 0.583 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.011 0.989 46 H 0.250 0.750 47 H 0.023 0.977 48 H 0.022 0.978 49 H 0.094 0.906 50 H 0.064 0.936 51 H 0.172 0.828 52 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 22.847 -10.409 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.008 4.008 3 C -0.212 4.212 4 C 0.317 3.683 5 O -0.405 6.405 6 N -0.331 5.331 7 C -0.024 4.024 8 C -0.178 4.178 9 C -0.135 4.135 10 C -0.085 4.085 11 C -0.174 4.174 12 C 0.031 3.969 13 N -0.328 5.328 14 C -0.343 4.343 15 H 0.093 0.907 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.025 3.975 23 C 0.006 3.994 24 C -0.139 4.139 25 C -0.150 4.150 26 N -0.201 5.201 27 C -0.100 4.100 28 N -0.168 5.168 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.122 0.878 45 H 0.029 0.971 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.040 0.960 49 H 0.112 0.888 50 H 0.082 0.918 51 H 0.189 0.811 52 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.004 21.581 -10.201 24.614 hybrid contribution -0.622 0.206 -0.297 0.719 sum -6.626 21.787 -10.497 25.075 Atomic orbital electron populations 1.21691 0.91062 1.03383 1.02211 1.19201 0.97553 0.95137 0.88924 1.22213 1.02711 0.93149 1.03153 1.19941 0.82207 0.79753 0.86415 1.90726 1.54917 1.45723 1.49106 1.48058 1.05021 1.60295 1.19750 1.22132 0.91052 0.96571 0.92628 1.22075 0.98212 0.99153 0.98401 1.21329 0.97488 1.00195 0.94533 1.21346 0.95022 0.94861 0.97235 1.22987 0.99196 1.00016 0.95175 1.21902 0.89392 0.89707 0.95911 1.44531 1.37627 1.00382 1.50257 1.19092 1.13459 0.80897 1.20901 0.90657 1.24733 0.98365 0.97863 0.99785 1.69800 1.24519 1.29838 1.33232 0.86106 0.77819 0.84729 0.77114 1.21735 1.21762 1.20741 1.21285 0.94851 0.85892 0.95465 1.21648 0.97739 0.95337 0.84662 1.20620 1.09326 0.98709 0.85219 1.22419 1.02115 0.95130 0.95319 1.70391 1.21757 1.25608 1.02308 1.25051 1.00008 0.86312 0.98588 1.43125 1.47379 1.19846 1.06479 0.74597 0.91020 0.92496 0.91284 0.90490 0.91894 0.91057 0.91918 0.88929 0.91405 0.89823 0.92580 0.90843 0.92034 0.92271 0.87822 0.97135 0.93934 0.95901 0.96040 0.88794 0.91765 0.81080 0.77533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 7.77 37.16 0.29 -0.96 16 2 C 0.00 -0.04 0.73 -156.81 -0.11 -0.15 16 3 C -0.15 -1.12 8.08 37.16 0.30 -0.82 16 4 C 0.53 7.58 5.50 -10.99 -0.06 7.52 16 5 O -0.53 -9.58 15.39 5.55 0.09 -9.49 16 6 N -0.60 -8.07 2.54 -173.13 -0.44 -8.51 16 7 C 0.10 1.10 3.74 -3.72 -0.01 1.09 16 8 C -0.14 -1.87 5.65 -26.55 -0.15 -2.02 16 9 C -0.10 -1.49 4.58 -27.04 -0.12 -1.61 16 10 C -0.08 -1.45 0.53 -154.09 -0.08 -1.53 16 11 C -0.13 -2.56 5.99 -24.88 -0.15 -2.71 16 12 C 0.16 3.84 5.57 -2.43 -0.01 3.83 16 13 N -0.60 -15.97 3.40 -170.22 -0.58 -16.55 16 14 C -0.21 -6.27 10.28 -15.06 -0.15 -6.43 16 15 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 16 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 17 N -0.92 -27.64 10.09 55.49 0.56 -27.08 16 18 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.15 3.32 5.96 -3.32 -0.02 3.30 16 23 C 0.13 1.95 5.02 -4.04 -0.02 1.93 16 24 C -0.02 -0.26 3.82 -81.60 -0.31 -0.57 16 25 C 0.00 -0.02 7.84 -17.81 -0.14 -0.16 16 26 N -0.48 -6.80 11.25 -14.66 -0.16 -6.97 16 27 C 0.18 1.69 13.04 -90.38 -1.18 0.51 16 28 N -0.56 -4.24 6.10 -10.30 -0.06 -4.30 16 29 H 0.42 1.61 8.96 -40.82 -0.37 1.24 16 30 H 0.07 0.73 8.01 -51.93 -0.42 0.31 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.55 4.94 -51.93 -0.26 0.29 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.09 0.94 3.06 -51.93 -0.16 0.78 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.34 3.99 -51.93 -0.21 1.13 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 42 H 0.06 1.17 8.02 -51.93 -0.42 0.76 16 43 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 44 H 0.10 2.89 5.88 -51.93 -0.31 2.59 16 45 H 0.01 0.28 7.78 -51.93 -0.40 -0.13 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.02 0.52 5.23 -51.93 -0.27 0.25 16 48 H 0.02 0.51 7.66 -51.93 -0.40 0.12 16 49 H 0.09 1.66 6.81 -51.93 -0.35 1.30 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.17 2.99 5.50 -52.48 -0.29 2.70 16 52 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -35.16 379.90 -9.94 -45.09 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.00 Total: 3.29 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.04 Total: 0.76 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.69 Total: -63.40 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.16 -9.94 -45.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054228694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.457 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.24 seconds