Wall clock time and date at job start Wed Apr 1 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47023 * 2 1 4 4 C 1.50702 * 109.47304 * 119.99752 * 2 1 3 5 5 O 1.21284 * 119.99919 * 3.39984 * 4 2 1 6 6 N 1.34775 * 119.99999 * 183.39945 * 4 2 1 7 7 C 1.46929 * 120.70397 * 354.30106 * 6 4 2 8 8 C 1.53180 * 108.93161 * 234.14082 * 7 6 4 9 9 C 1.53166 * 109.27963 * 304.78788 * 8 7 6 10 10 C 1.52235 * 109.65537 * 60.16643 * 9 8 7 11 11 C 1.54477 * 110.28983 * 178.01281 * 10 9 8 12 12 C 1.55035 * 101.53005 * 276.21021 * 11 10 9 13 13 N 1.47478 * 104.90412 * 323.65801 * 12 11 10 14 14 C 1.36933 * 125.66224 * 204.03061 * 13 12 11 15 15 H 1.08007 * 120.00675 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.00129 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99701 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00545 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47407 * 89.99691 * 18 16 14 20 20 H 1.48492 * 109.47505 * 210.00456 * 18 16 14 21 21 H 1.48511 * 109.46997 * 330.00004 * 18 16 14 22 22 C 1.47190 * 108.67991 * 24.01227 * 13 12 11 23 23 C 1.47083 * 120.70217 * 174.28793 * 6 4 2 24 24 C 1.50698 * 109.47194 * 239.99816 * 2 1 3 25 25 C 1.34673 * 126.59147 * 249.98871 * 24 2 1 26 26 N 1.34126 * 108.01869 * 179.87213 * 25 24 2 27 27 C 1.30496 * 109.25743 * 0.39525 * 26 25 24 28 28 N 1.35046 * 108.69982 * 359.75831 * 27 26 25 29 29 H 0.97000 * 126.39384 * 179.97438 * 28 27 26 30 30 H 1.09005 * 109.46971 * 295.11775 * 1 2 3 31 31 H 1.08995 * 109.47263 * 55.12472 * 1 2 3 32 32 H 1.09003 * 109.47207 * 175.12298 * 1 2 3 33 33 H 1.09005 * 109.46788 * 185.48351 * 3 2 1 34 34 H 1.09000 * 109.46599 * 305.47288 * 3 2 1 35 35 H 1.08993 * 109.47480 * 65.47967 * 3 2 1 36 36 H 1.09001 * 109.55697 * 114.30846 * 7 6 4 37 37 H 1.09001 * 109.64926 * 354.03642 * 7 6 4 38 38 H 1.09001 * 109.50902 * 184.84185 * 8 7 6 39 39 H 1.09001 * 109.53522 * 64.74116 * 8 7 6 40 40 H 1.09004 * 109.43389 * 300.11377 * 9 8 7 41 41 H 1.09004 * 109.41292 * 180.21120 * 9 8 7 42 42 H 1.09003 * 111.01466 * 158.14701 * 11 10 9 43 43 H 1.09001 * 111.04702 * 34.28579 * 11 10 9 44 44 H 1.08999 * 110.35201 * 204.79695 * 12 11 10 45 45 H 1.09005 * 110.44256 * 82.56050 * 12 11 10 46 46 H 0.97004 * 120.00252 * 180.02562 * 17 16 14 47 47 H 1.08996 * 109.91463 * 117.82861 * 22 13 12 48 48 H 1.09003 * 109.90947 * 239.10484 * 22 13 12 49 49 H 1.09002 * 109.58088 * 7.75487 * 23 6 4 50 50 H 1.09006 * 109.57493 * 247.36235 * 23 6 4 51 51 H 1.08004 * 125.98840 * 0.02754 * 25 24 2 52 52 H 1.08000 * 125.65189 * 179.73168 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2460 -1.2249 1.9972 6 7 3.3555 -0.7739 1.4789 7 6 4.3277 -0.2664 0.5011 8 6 5.3362 -1.3743 0.1821 9 6 5.9730 -1.8688 1.4844 10 6 4.8933 -2.4198 2.4054 11 6 5.5255 -2.9685 3.7037 12 6 5.9453 -4.3950 3.2652 13 7 4.8787 -4.8393 2.3486 14 6 4.5535 -6.1407 2.0734 15 1 3.7518 -6.3630 1.3846 16 6 5.2542 -7.1744 2.6796 17 7 6.2308 -6.9036 3.5193 18 14 4.8102 -8.9497 2.3047 19 1 5.6050 -9.4242 1.1435 20 1 5.1092 -9.7953 3.4881 21 1 3.3629 -9.0409 1.9842 22 6 4.2215 -3.6518 1.7792 23 6 3.8569 -1.3524 2.7349 24 6 2.0323 -0.7104 -1.2304 25 6 2.6488 -1.9071 -1.2710 26 7 2.9323 -2.1845 -2.5523 27 6 2.5225 -1.2015 -3.3064 28 7 1.9550 -0.2608 -2.5209 29 1 1.5656 0.5771 -2.8162 30 1 -0.3633 0.4362 0.9305 31 1 -0.3633 0.5876 -0.8430 32 1 -0.3634 -1.0240 -0.0874 33 1 3.1256 1.4440 -0.0982 34 1 1.5988 1.9838 -0.8369 35 1 1.7590 1.9272 0.9349 36 1 4.8505 0.5938 0.9190 37 1 3.8096 0.0293 -0.4112 38 1 6.1115 -0.9823 -0.4762 39 1 4.8252 -2.2018 -0.3101 40 1 6.4817 -1.0400 1.9769 41 1 6.6940 -2.6548 1.2595 42 1 4.7924 -3.0070 4.5094 43 1 6.3939 -2.3781 3.9962 44 1 6.0019 -5.0562 4.1299 45 1 6.9036 -4.3674 2.7466 46 1 6.7207 -7.6258 3.9427 47 1 4.3539 -3.6371 0.6974 48 1 3.1598 -3.6611 2.0257 49 1 3.0307 -1.8029 3.2849 50 1 4.3171 -0.5704 3.3390 51 1 2.8731 -2.5346 -0.4211 52 1 2.6212 -1.1486 -4.3805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054228694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:42 Heat of formation + Delta-G solvation = 39.712242 kcal Electronic energy + Delta-G solvation = -33529.539197 eV Core-core repulsion = 29530.133131 eV Total energy + Delta-G solvation = -3999.406066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.44043 -41.62508 -40.02249 -37.36044 -36.45037 -34.73410 -33.32051 -33.10423 -31.95633 -30.19012 -29.88149 -28.28275 -27.49955 -26.91572 -25.49187 -24.05039 -23.39048 -22.33489 -22.19620 -21.84298 -20.32679 -19.52180 -19.00811 -18.86495 -17.55158 -16.98272 -16.86838 -16.49132 -16.22734 -15.92110 -15.77291 -15.33484 -15.23969 -14.96607 -14.81168 -14.57310 -14.31244 -14.26334 -13.93702 -13.78951 -13.76548 -13.35407 -13.30489 -13.20330 -12.98145 -12.80251 -12.75293 -12.60827 -12.38191 -12.26615 -12.14290 -12.01609 -11.93974 -11.66886 -11.56936 -11.32057 -11.15086 -10.95385 -10.91476 -10.75428 -10.66698 -9.57488 -9.32591 -8.89087 -7.80030 -5.23463 1.01720 1.40831 1.43170 1.43574 1.52305 1.96129 2.19974 2.28365 2.46493 3.26824 3.29252 3.55241 3.63011 3.65926 3.81468 3.85791 3.92767 3.98155 4.03882 4.10828 4.20058 4.31059 4.46609 4.51961 4.55342 4.56683 4.63733 4.65667 4.71887 4.74886 4.78477 4.79530 4.81556 4.85437 4.88765 4.95809 5.05243 5.11970 5.16866 5.17741 5.22347 5.25985 5.40005 5.47788 5.52577 5.53316 5.66558 5.67226 5.81778 6.29751 6.40848 6.60772 7.10055 7.11475 7.15367 7.76761 8.41059 9.21361 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.003781 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.703072 B = 7403.799053 C = 8089.925266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.003 3.997 3 C -0.151 4.151 4 C 0.521 3.479 5 O -0.580 6.580 6 N -0.597 5.597 7 C 0.103 3.897 8 C -0.136 4.136 9 C -0.093 4.093 10 C -0.069 4.069 11 C -0.120 4.120 12 C 0.159 3.841 13 N -0.624 5.624 14 C -0.243 4.243 15 H 0.065 0.935 16 C -0.061 4.061 17 N -0.944 5.944 18 Si 0.977 3.023 19 H -0.284 1.284 20 H -0.285 1.285 21 H -0.277 1.277 22 C 0.159 3.841 23 C 0.134 3.866 24 C -0.005 4.005 25 C -0.037 4.037 26 N -0.539 5.539 27 C 0.206 3.794 28 N -0.540 5.540 29 H 0.440 0.560 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.069 0.931 45 H -0.009 1.009 46 H 0.248 0.752 47 H 0.013 0.987 48 H -0.009 1.009 49 H 0.062 0.938 50 H 0.102 0.898 51 H 0.126 0.874 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 27.074 -12.436 30.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.001 4.001 3 C -0.208 4.208 4 C 0.309 3.691 5 O -0.460 6.460 6 N -0.328 5.328 7 C -0.018 4.018 8 C -0.174 4.174 9 C -0.130 4.130 10 C -0.070 4.070 11 C -0.159 4.159 12 C 0.034 3.966 13 N -0.350 5.350 14 C -0.372 4.372 15 H 0.083 0.917 16 C -0.253 4.253 17 N -0.594 5.594 18 Si 0.805 3.195 19 H -0.211 1.211 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.034 3.966 23 C 0.011 3.989 24 C -0.122 4.122 25 C -0.184 4.184 26 N -0.259 5.259 27 C -0.079 4.079 28 N -0.146 5.146 29 H 0.283 0.717 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.008 0.992 46 H 0.058 0.942 47 H 0.030 0.970 48 H 0.009 0.991 49 H 0.081 0.919 50 H 0.120 0.880 51 H 0.144 0.856 52 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -5.951 25.867 -12.255 29.236 hybrid contribution -0.660 -1.195 0.264 1.390 sum -6.611 24.672 -11.991 28.217 Atomic orbital electron populations 1.21702 0.90744 1.02044 1.03673 1.19205 0.97693 0.96792 0.86448 1.22252 1.03255 0.90312 1.04964 1.20758 0.82007 0.79132 0.87160 1.90699 1.56189 1.47893 1.51177 1.48116 1.05482 1.59665 1.19515 1.22325 0.90166 0.96426 0.92904 1.22011 0.99036 0.98962 0.97382 1.21299 0.96076 1.00349 0.95315 1.21261 0.95966 0.93485 0.96333 1.22854 1.00558 0.96753 0.95757 1.21699 0.88363 0.92583 0.93927 1.44848 1.38303 1.00798 1.51055 1.19339 1.13712 0.82841 1.21297 0.91748 1.25547 0.98363 1.01756 0.99665 1.70047 1.25015 1.30711 1.33620 0.85108 0.77712 0.79672 0.77033 1.21080 1.21135 1.20199 1.21283 0.93301 0.86985 0.95017 1.21454 0.96040 0.95509 0.85862 1.20375 1.07802 0.97416 0.86626 1.21880 1.05294 0.96504 0.94751 1.70281 1.24390 1.28499 1.02683 1.25795 0.97407 0.84811 0.99857 1.42947 1.46464 1.20458 1.04685 0.71743 0.91415 0.88678 0.94497 0.89802 0.88354 0.90745 0.88187 0.87538 0.89032 0.93309 0.88748 0.94015 0.92275 0.88525 0.91321 0.99154 0.94192 0.96955 0.99075 0.91941 0.88010 0.85614 0.73232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 7.77 71.98 0.56 -1.72 16 2 C 0.00 0.06 0.73 -53.67 -0.04 0.02 16 3 C -0.15 -1.48 8.08 71.98 0.58 -0.90 16 4 C 0.52 15.02 5.50 87.66 0.48 15.51 16 5 O -0.58 -22.29 15.39 -3.04 -0.05 -22.34 16 6 N -0.60 -15.68 2.54 -820.04 -2.08 -17.76 16 7 C 0.10 2.02 3.74 86.36 0.32 2.34 16 8 C -0.14 -3.48 5.65 30.71 0.17 -3.30 16 9 C -0.09 -2.74 4.58 30.40 0.14 -2.60 16 10 C -0.07 -2.45 0.53 -51.91 -0.03 -2.48 16 11 C -0.12 -4.62 5.99 31.79 0.19 -4.43 16 12 C 0.16 8.29 5.57 86.89 0.48 8.77 16 13 N -0.62 -35.54 3.40 -692.46 -2.36 -37.90 16 14 C -0.24 -15.12 10.28 84.03 0.86 -14.26 16 15 H 0.06 4.01 7.83 -2.91 -0.02 3.99 16 16 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 17 N -0.94 -58.98 10.09 21.65 0.22 -58.76 16 18 Si 0.98 49.18 29.55 68.60 2.03 51.20 16 19 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 22 C 0.16 7.61 5.96 86.47 0.52 8.12 16 23 C 0.13 4.05 5.02 86.07 0.43 4.48 16 24 C -0.01 -0.10 3.82 40.95 0.16 0.06 16 25 C -0.04 -1.09 7.84 83.52 0.65 -0.44 16 26 N -0.54 -15.20 11.25 -200.31 -2.25 -17.45 16 27 C 0.21 3.17 13.04 180.26 2.35 5.52 16 28 N -0.54 -6.06 6.10 -186.49 -1.14 -7.20 16 29 H 0.44 0.92 8.96 -92.71 -0.83 0.09 16 30 H 0.07 1.31 8.01 -2.38 -0.02 1.29 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.74 4.94 -2.38 -0.01 0.73 16 34 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.10 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.11 1.82 3.06 -2.39 -0.01 1.82 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.64 3.99 -2.39 -0.01 1.63 16 40 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.04 1.50 7.52 -2.38 -0.02 1.48 16 42 H 0.06 2.30 8.02 -2.39 -0.02 2.28 16 43 H 0.10 3.01 8.01 -2.39 -0.02 2.99 16 44 H 0.07 4.07 5.88 -2.39 -0.01 4.05 16 45 H -0.01 -0.52 7.78 -2.38 -0.02 -0.54 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.01 0.63 5.23 -2.39 -0.01 0.62 16 48 H -0.01 -0.46 7.66 -2.39 -0.02 -0.48 16 49 H 0.06 2.31 6.81 -2.39 -0.02 2.30 16 50 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 51 H 0.13 4.89 5.50 -2.91 -0.02 4.87 16 52 H 0.25 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -87.86 379.90 2.79 -85.06 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.12 Total: 13.67 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 8.30 Total: 11.47 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -7.61 Total: -139.07 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.34 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.03 Total: 51.20 kcal Total: -87.86 2.79 -85.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054228694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.776 kcal (2) G-P(sol) polarization free energy of solvation -87.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds