Wall clock time and date at job start Wed Apr 1 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47181 * 2 1 4 4 N 1.30504 * 125.65301 * 270.18539 * 3 2 1 5 5 C 1.34131 * 109.25335 * 180.29066 * 4 3 2 6 6 C 1.34668 * 108.01980 * 359.71849 * 5 4 3 7 7 N 1.35043 * 125.64862 * 89.99720 * 3 2 1 8 8 C 1.46505 * 126.39497 * 359.97438 * 7 3 2 9 9 H 1.09000 * 109.47218 * 359.70358 * 8 7 3 10 10 C 1.53001 * 109.46777 * 239.70750 * 8 7 3 11 11 C 1.52995 * 109.47155 * 119.70755 * 8 7 3 12 12 C 1.50705 * 109.46950 * 184.99567 * 11 8 7 13 13 O 1.21282 * 119.99819 * 0.02562 * 12 11 8 14 14 N 1.34775 * 120.00017 * 179.97438 * 12 11 8 15 15 C 1.47894 * 134.34219 * 180.02562 * 14 12 11 16 16 C 1.52372 * 85.58927 * 156.51943 * 15 14 12 17 17 C 1.47883 * 134.34118 * 0.02562 * 14 12 11 18 18 C 1.53876 * 116.28381 * 264.18233 * 16 15 14 19 19 C 1.54601 * 102.63063 * 264.37930 * 18 16 15 20 20 N 1.47136 * 107.47544 * 339.39360 * 19 18 16 21 21 C 1.36946 * 125.58347 * 179.02645 * 20 19 18 22 22 H 1.07995 * 120.00074 * 179.97438 * 21 20 19 23 23 C 1.38814 * 120.00020 * 359.97293 * 21 20 19 24 24 N 1.31622 * 119.99761 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00078 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46916 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47115 * 120.00300 * 25 23 21 28 28 H 1.48502 * 109.47325 * 240.00418 * 25 23 21 29 29 C 1.47720 * 108.83064 * 359.00447 * 20 19 18 30 30 H 1.09000 * 109.47382 * 299.99671 * 1 2 3 31 31 H 1.09004 * 109.47812 * 59.99720 * 1 2 3 32 32 H 1.09000 * 109.47232 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46703 * 240.00651 * 2 1 3 34 34 H 1.08993 * 109.47335 * 120.00328 * 2 1 3 35 35 H 1.07994 * 125.98294 * 179.72017 * 5 4 3 36 36 H 1.08001 * 126.58930 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.47436 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.46926 * 299.99786 * 10 8 7 39 39 H 1.09003 * 109.47352 * 59.99538 * 10 8 7 40 40 H 1.08998 * 109.47330 * 65.00045 * 11 8 7 41 41 H 1.09002 * 109.47241 * 304.99710 * 11 8 7 42 42 H 1.08999 * 113.85142 * 42.35172 * 15 14 12 43 43 H 1.09005 * 113.96866 * 270.69608 * 15 14 12 44 44 H 1.09002 * 113.85860 * 89.31809 * 17 14 12 45 45 H 1.08997 * 113.85785 * 317.64755 * 17 14 12 46 46 H 1.08999 * 110.74128 * 146.13102 * 18 16 15 47 47 H 1.09004 * 110.87990 * 22.69136 * 18 16 15 48 48 H 1.09002 * 109.86948 * 219.87830 * 19 18 16 49 49 H 1.08999 * 109.86727 * 98.90432 * 19 18 16 50 50 H 0.97006 * 119.99370 * 180.02562 * 24 23 21 51 51 H 1.08992 * 110.40138 * 141.24798 * 29 20 19 52 52 H 1.09001 * 110.40009 * 263.54912 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2826 2.1391 -1.0604 5 6 2.7188 3.3497 -0.6818 6 6 2.7336 3.3849 0.6644 7 7 2.2946 2.1629 1.0974 8 6 2.1435 1.7372 2.4911 9 1 1.7749 0.7119 2.5199 10 6 1.1476 2.6573 3.2001 11 6 3.4988 1.8121 3.1970 12 6 3.3693 1.2592 4.5929 13 8 2.2985 0.8455 4.9844 14 7 4.4436 1.2234 5.4060 15 6 4.6759 0.7636 6.7923 16 6 6.1343 0.6195 6.3751 17 6 5.8591 1.6282 5.2668 18 6 6.5796 -0.7839 5.9279 19 6 7.1861 -1.3744 7.2215 20 7 7.5279 -0.2475 8.1036 21 6 8.0724 -0.3523 9.3558 22 1 8.2886 0.5384 9.9270 23 6 8.3464 -1.6035 9.8910 24 7 8.0834 -2.6890 9.1947 25 14 9.0897 -1.7466 11.5987 26 1 9.2886 -0.3892 12.1672 27 1 8.1731 -2.5200 12.4743 28 1 10.3978 -2.4441 11.5124 29 6 7.1881 1.0156 7.4171 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.0074 4.1550 -1.3410 36 1 3.0337 4.2175 1.2834 37 1 1.0348 2.3404 4.2369 38 1 1.5162 3.6827 3.1712 39 1 0.1821 2.6040 2.6971 40 1 3.8258 2.8507 3.2465 41 1 4.2310 1.2267 2.6408 42 1 4.1899 -0.1826 7.0302 43 1 4.5074 1.5313 7.5475 44 1 6.0523 2.6619 5.5537 45 1 6.3018 1.3607 4.3074 46 1 7.3330 -0.7180 5.1429 47 1 5.7258 -1.3752 5.5965 48 1 8.0844 -1.9439 6.9831 49 1 6.4573 -2.0202 7.7112 50 1 8.2745 -3.5634 9.5688 51 1 6.7719 1.7326 8.1246 52 1 8.0695 1.4320 6.9294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072752353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:47 Heat of formation + Delta-G solvation = 84.285785 kcal Electronic energy + Delta-G solvation = -30736.140633 eV Core-core repulsion = 26738.667421 eV Total energy + Delta-G solvation = -3997.473212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 18.10 seconds Orbital eigenvalues (eV) -42.42851 -40.71472 -38.80605 -35.98487 -35.55828 -34.07313 -32.31808 -31.18355 -29.88132 -28.99837 -28.84922 -27.93046 -26.22584 -25.63203 -24.17442 -23.77084 -23.09906 -21.26233 -20.37419 -19.59841 -19.23813 -18.44226 -17.70422 -16.86938 -16.44379 -16.19917 -15.93886 -15.46348 -15.18633 -14.83370 -14.64956 -14.48733 -14.36549 -13.82647 -13.78443 -13.68307 -13.62425 -13.28669 -13.00616 -12.58688 -12.45636 -12.42479 -12.15669 -12.00766 -11.93208 -11.87508 -11.80031 -11.57566 -11.34633 -11.16849 -10.98836 -10.80320 -10.53346 -10.30959 -10.18120 -10.11903 -9.96822 -9.88138 -9.77694 -9.60317 -8.69649 -8.66488 -8.56522 -6.90994 -5.77721 -3.11775 1.81866 2.32786 2.48098 2.84621 2.96106 3.35777 3.41339 3.43878 4.09076 4.12322 4.22842 4.36813 4.40173 4.53758 4.57751 4.70557 4.83247 4.87038 4.96548 5.02600 5.10517 5.11506 5.14020 5.30367 5.33288 5.38001 5.38989 5.43856 5.46019 5.50725 5.57104 5.57746 5.70620 5.72197 5.73752 5.85496 5.87929 5.89137 6.08514 6.11709 6.14628 6.37152 6.40826 6.55722 6.56899 6.60348 6.97063 7.49016 7.53576 7.64662 7.76084 7.92077 7.99917 8.18217 9.14911 9.74997 10.39704 11.33888 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023449 B = 0.002003 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.812528 B =13975.024599 C =14128.812696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C 0.210 3.790 4 N -0.493 5.493 5 C -0.030 4.030 6 C -0.057 4.057 7 N -0.448 5.448 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.164 4.164 11 C -0.146 4.146 12 C 0.538 3.462 13 O -0.544 6.544 14 N -0.637 5.637 15 C 0.132 3.868 16 C -0.104 4.104 17 C 0.113 3.887 18 C -0.119 4.119 19 C 0.178 3.822 20 N -0.605 5.605 21 C -0.229 4.229 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.151 3.849 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.044 0.956 49 H 0.047 0.953 50 H 0.252 0.748 51 H 0.042 0.958 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.286 10.891 -16.509 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.052 4.052 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.131 5.131 8 C 0.043 3.957 9 H 0.129 0.871 10 C -0.222 4.222 11 C -0.186 4.186 12 C 0.327 3.673 13 O -0.423 6.423 14 N -0.372 5.372 15 C 0.011 3.989 16 C -0.106 4.106 17 C -0.010 4.010 18 C -0.158 4.158 19 C 0.054 3.946 20 N -0.331 5.331 21 C -0.357 4.357 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.743 3.257 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.024 3.976 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.187 0.813 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.068 10.207 -16.941 23.169 hybrid contribution 0.731 0.404 1.711 1.903 sum -11.337 10.610 -15.230 21.750 Atomic orbital electron populations 1.21740 0.93880 1.02393 1.02461 1.19995 0.96541 0.87448 1.04097 1.23289 1.03982 0.96596 0.81334 1.70244 1.18346 1.04296 1.28251 1.22255 1.06495 0.96350 0.92743 1.22597 1.09403 0.90214 0.96728 1.45617 1.48601 1.11789 1.07069 1.21172 0.95447 1.01585 0.77461 0.87061 1.22268 0.98204 0.98676 1.03021 1.21922 0.98473 1.03991 0.94237 1.19814 0.82620 0.78635 0.86240 1.90691 1.26237 1.48738 1.76655 1.50248 1.09355 1.61870 1.15733 1.22979 0.93331 1.00180 0.82401 1.22509 0.95234 0.96875 0.95996 1.23135 0.78670 0.99320 0.99909 1.22577 0.99748 0.93251 1.00177 1.21214 0.98251 0.89436 0.85714 1.44537 1.73833 0.99511 1.15232 1.19084 1.33792 0.92687 0.90168 0.90325 1.24812 1.01510 0.95411 0.98688 1.69971 1.53261 0.96960 1.36652 0.86046 0.78491 0.77509 0.83703 1.20493 1.21748 1.21749 1.21215 0.93531 0.90674 0.92174 0.92780 0.91921 0.91501 0.88662 0.90333 0.81511 0.81254 0.88363 0.92278 0.91937 0.88283 0.88262 0.89712 0.89540 0.89337 0.90011 0.91864 0.92034 0.93769 0.93475 0.93748 0.93989 0.95652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.04 -0.35 6.07 -27.88 -0.17 -0.52 16 3 C 0.21 2.28 7.16 -155.41 -1.11 1.17 16 4 N -0.49 -6.15 11.25 -10.82 -0.12 -6.27 16 5 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 6 C -0.06 -0.51 10.70 -16.56 -0.18 -0.69 16 7 N -0.45 -4.32 2.61 -106.83 -0.28 -4.60 16 8 C 0.15 1.34 2.64 -67.93 -0.18 1.16 16 9 H 0.11 1.08 6.49 -51.93 -0.34 0.74 16 10 C -0.16 -1.46 8.99 37.16 0.33 -1.13 16 11 C -0.15 -1.31 4.93 -27.88 -0.14 -1.45 16 12 C 0.54 6.67 7.77 -10.98 -0.09 6.59 16 13 O -0.54 -8.38 14.69 5.56 0.08 -8.29 16 14 N -0.64 -8.01 3.62 -186.89 -0.68 -8.68 16 15 C 0.13 1.93 8.14 -3.60 -0.03 1.90 16 16 C -0.10 -1.55 0.99 -154.73 -0.15 -1.70 16 17 C 0.11 1.22 7.99 -3.60 -0.03 1.19 16 18 C -0.12 -2.01 6.35 -25.43 -0.16 -2.17 16 19 C 0.18 4.06 5.39 -2.85 -0.02 4.04 16 20 N -0.60 -14.35 3.41 -170.51 -0.58 -14.93 16 21 C -0.23 -6.08 10.28 -15.05 -0.15 -6.23 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.28 10.30 55.49 0.57 -25.71 16 25 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 C 0.15 2.72 6.66 -3.17 -0.02 2.70 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.60 7.08 -51.93 -0.37 0.23 16 35 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.10 1.05 5.95 -51.93 -0.31 0.74 16 38 H 0.06 0.46 7.95 -51.93 -0.41 0.05 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 43 H 0.09 1.19 8.05 -51.93 -0.42 0.78 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 48 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 49 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 50 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 52 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 414.37 15.07 6.24 6.24 Total: -1.00 -32.34 414.37 -10.72 -43.06 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.91 Total: -0.59 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.03 Total: 3.29 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -1.09 Total: -60.19 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.34 -10.72 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072752353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.346 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.10 seconds