Wall clock time and date at job start Wed Apr 1 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34259 * 125.75462 * 2 1 4 4 C 1.38043 * 107.41843 * 180.02562 * 3 2 1 5 5 C 1.47432 * 126.41404 * 179.97438 * 4 3 2 6 6 O 1.21599 * 119.99785 * 174.10566 * 5 4 3 7 7 N 1.34772 * 119.99954 * 354.11490 * 5 4 3 8 8 C 1.47895 * 134.34102 * 179.97438 * 7 5 4 9 9 C 1.52376 * 85.73074 * 156.53498 * 8 7 5 10 10 C 1.48162 * 134.44871 * 359.87241 * 7 5 4 11 11 C 1.53652 * 116.39605 * 141.28648 * 9 8 7 12 12 C 1.54598 * 102.73579 * 162.91451 * 11 9 8 13 13 N 1.47140 * 107.36533 * 339.24640 * 12 11 9 14 14 C 1.36929 * 125.58852 * 179.07251 * 13 12 11 15 15 H 1.08005 * 120.00066 * 180.02562 * 14 13 12 16 16 C 1.38817 * 119.99938 * 0.02707 * 14 13 12 17 17 N 1.31612 * 119.99900 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99855 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47007 * 89.99748 * 18 16 14 20 20 H 1.48500 * 109.46928 * 210.00073 * 18 16 14 21 21 H 1.48506 * 109.46958 * 329.99849 * 18 16 14 22 22 C 1.47725 * 108.82059 * 359.07537 * 13 12 11 23 23 C 1.41289 * 107.16955 * 0.22927 * 4 3 2 24 24 C 1.50703 * 125.98745 * 179.74008 * 23 4 3 25 25 C 1.52997 * 109.47100 * 62.30907 * 24 23 4 26 26 C 1.52999 * 109.46913 * 182.31164 * 24 23 4 27 27 C 1.53006 * 109.46915 * 302.31003 * 24 23 4 28 28 N 1.30445 * 108.02266 * 359.61179 * 23 4 3 29 29 H 1.08993 * 109.46950 * 90.00011 * 1 2 3 30 30 H 1.09003 * 109.46385 * 209.99848 * 1 2 3 31 31 H 1.09001 * 109.47116 * 329.99699 * 1 2 3 32 32 H 1.08002 * 126.28913 * 0.02562 * 3 2 1 33 33 H 1.08998 * 113.85349 * 42.30962 * 8 7 5 34 34 H 1.08995 * 113.85224 * 270.76696 * 8 7 5 35 35 H 1.08994 * 113.74000 * 89.29798 * 10 7 5 36 36 H 1.09000 * 114.04438 * 317.67163 * 10 7 5 37 37 H 1.09002 * 110.75762 * 281.22694 * 11 9 8 38 38 H 1.09003 * 110.76223 * 44.60069 * 11 9 8 39 39 H 1.09001 * 109.86810 * 98.69289 * 12 11 9 40 40 H 1.08997 * 109.86828 * 219.79854 * 12 11 9 41 41 H 0.97008 * 119.99658 * 180.02562 * 17 16 14 42 42 H 1.08996 * 110.40046 * 263.65498 * 22 13 12 43 43 H 1.09006 * 110.39864 * 141.24866 * 22 13 12 44 44 H 1.08999 * 109.47215 * 68.28947 * 25 24 23 45 45 H 1.08996 * 109.47075 * 188.28664 * 25 24 23 46 46 H 1.08996 * 109.47286 * 308.28618 * 25 24 23 47 47 H 1.08997 * 109.47599 * 59.99952 * 26 24 23 48 48 H 1.09005 * 109.46623 * 179.97438 * 26 24 23 49 49 H 1.08995 * 109.47118 * 299.99710 * 26 24 23 50 50 H 1.08995 * 109.47272 * 51.77027 * 27 24 23 51 51 H 1.08999 * 109.46832 * 171.76611 * 27 24 23 52 52 H 1.09001 * 109.46879 * 291.76543 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6553 -0.0006 5 6 4.7639 1.5062 -0.0013 6 8 5.8650 1.0016 0.1063 7 7 4.6440 2.8432 -0.1212 8 6 5.6038 3.9678 -0.1589 9 6 4.5087 4.7285 -0.8964 10 6 3.5002 3.7732 -0.2694 11 6 4.3523 6.2153 -0.5419 12 6 3.5225 6.7626 -1.7260 13 7 3.6843 5.8232 -2.8469 14 6 3.0932 5.9403 -4.0765 15 1 3.2752 5.1947 -4.8364 16 6 2.2601 7.0174 -4.3462 17 7 2.0380 7.9257 -3.4201 18 14 1.4531 7.1768 -6.0234 19 1 0.1398 6.4836 -6.0088 20 1 1.2511 8.6133 -6.3410 21 1 2.3269 6.5602 -7.0538 22 6 4.5890 4.7329 -2.4282 23 6 3.5311 -0.7573 -0.0063 24 6 4.7322 -1.6675 -0.0145 25 6 5.5482 -1.4465 1.2607 26 6 4.2679 -3.1240 -0.0770 27 6 5.5999 -1.3559 -1.2356 28 7 2.2827 -1.1356 -0.0006 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9166 2.1170 0.0004 33 1 6.4887 3.7719 -0.7644 34 1 5.8410 4.3779 0.8227 35 1 3.0930 4.1227 0.6793 36 1 2.7326 3.4263 -0.9612 37 1 3.8109 6.3339 0.3967 38 1 5.3248 6.7052 -0.4927 39 1 2.4715 6.8254 -1.4441 40 1 3.8906 7.7478 -2.0123 41 1 1.4555 8.6782 -3.6085 42 1 5.6083 4.9386 -2.7547 43 1 4.2458 3.7793 -2.8295 44 1 4.9833 -1.8068 2.1205 45 1 6.4888 -1.9926 1.1894 46 1 5.7538 -0.3829 1.3808 47 1 3.6866 -3.2814 -0.9855 48 1 5.1368 -3.7822 -0.0834 49 1 3.6498 -3.3459 0.7928 50 1 5.8095 -0.2868 -1.2691 51 1 6.5372 -1.9078 -1.1656 52 1 5.0712 -1.6511 -2.1419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073062809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:04 Heat of formation + Delta-G solvation = 110.861177 kcal Electronic energy + Delta-G solvation = -31960.602554 eV Core-core repulsion = 27964.281737 eV Total energy + Delta-G solvation = -3996.320817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.64768 -40.28049 -38.16993 -36.69408 -35.49937 -32.85751 -32.25859 -30.85240 -29.51178 -28.31138 -27.25245 -27.04618 -26.82089 -26.23797 -25.71730 -23.81898 -22.28691 -21.64214 -20.33144 -19.57622 -18.54819 -18.12999 -17.21075 -16.88629 -16.19162 -15.79957 -15.44206 -15.26552 -14.89385 -14.77895 -14.44924 -14.22107 -14.11731 -13.78973 -13.70808 -13.25827 -13.06828 -12.78054 -12.60871 -12.41128 -12.28177 -12.09429 -11.93722 -11.86929 -11.81701 -11.35497 -11.24077 -11.07665 -11.04644 -10.96155 -10.87069 -10.78271 -10.45218 -10.39218 -10.12748 -10.08817 -9.88462 -9.70238 -9.42027 -9.31476 -8.72986 -8.64549 -8.37480 -6.88435 -5.76279 -3.09482 1.47756 2.17776 2.24080 2.99136 3.35979 3.42272 3.43688 3.54914 4.17259 4.42937 4.48940 4.62877 4.68202 4.80835 4.89994 4.94531 5.00919 5.11247 5.15711 5.20419 5.28289 5.43655 5.45600 5.50021 5.54427 5.61331 5.69764 5.71861 5.74223 5.79963 5.80864 5.95846 5.98614 6.03039 6.09534 6.13627 6.15474 6.19023 6.20165 6.44185 6.48874 6.50991 6.60791 6.65465 6.65827 6.70127 6.73768 7.51169 7.54951 7.56185 7.77664 7.92114 8.20330 8.44471 9.17558 9.77147 10.42735 11.35238 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.003062 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.179104 B = 9141.076652 C = 9959.701387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.365 5.365 3 C 0.099 3.901 4 C -0.280 4.280 5 C 0.612 3.388 6 O -0.536 6.536 7 N -0.638 5.638 8 C 0.126 3.874 9 C -0.102 4.102 10 C 0.115 3.885 11 C -0.132 4.132 12 C 0.179 3.821 13 N -0.605 5.605 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.162 3.838 23 C 0.144 3.856 24 C 0.020 3.980 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.148 4.148 28 N -0.301 5.301 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.185 0.815 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.252 0.748 42 H 0.026 0.974 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.090 0.910 51 H 0.057 0.943 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -14.219 11.353 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.142 5.142 3 C -0.052 4.052 4 C -0.295 4.295 5 C 0.404 3.596 6 O -0.416 6.416 7 N -0.372 5.372 8 C 0.003 3.997 9 C -0.104 4.104 10 C -0.008 4.008 11 C -0.171 4.171 12 C 0.054 3.946 13 N -0.332 5.332 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.036 3.964 23 C -0.024 4.024 24 C 0.018 3.982 25 C -0.204 4.204 26 C -0.193 4.193 27 C -0.206 4.206 28 N -0.121 5.121 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.202 0.798 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.109 0.891 51 H 0.076 0.924 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.093 -15.549 11.308 19.227 hybrid contribution -0.375 0.976 -0.901 1.380 sum -0.468 -14.574 10.407 17.914 Atomic orbital electron populations 1.21985 0.73596 1.04782 1.04021 1.48324 1.07052 1.03891 1.54968 1.23463 0.90661 0.93909 0.97155 1.20150 0.92514 0.93655 1.23198 1.16840 0.87669 0.79657 0.75455 1.90606 1.27483 1.71979 1.51544 1.50069 1.11096 1.03536 1.72498 1.22949 0.94471 0.82442 0.99799 1.22442 0.94572 0.95211 0.98191 1.23184 0.91351 0.86550 0.99695 1.22679 1.01095 0.93078 1.00210 1.21203 0.97020 0.92609 0.83759 1.44563 1.53423 1.23645 1.11533 1.19044 1.21338 1.06665 0.88478 0.90533 1.24770 1.00265 0.97261 0.98030 1.69954 1.41111 1.13666 1.32222 0.86148 0.79348 0.76957 0.83493 1.21682 1.21662 1.20693 1.21036 0.94264 0.92535 0.88571 1.22399 0.92870 0.92095 0.95008 1.18955 0.89355 0.91969 0.97914 1.22082 0.98424 1.05417 0.94470 1.21822 1.00747 0.94598 1.02141 1.22097 0.98211 1.05327 0.94950 1.77147 1.01240 1.07144 1.26534 0.90137 0.89025 0.89032 0.79828 0.89960 0.89859 0.89709 0.89706 0.91777 0.91654 0.93544 0.93851 0.93777 0.95675 0.94221 0.93941 0.92444 0.88922 0.92605 0.92442 0.92588 0.89114 0.92372 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.44 59.85 0.68 1.39 16 2 N -0.36 -4.34 3.98 -67.60 -0.27 -4.61 16 3 C 0.10 1.23 10.52 -16.56 -0.17 1.05 16 4 C -0.28 -4.09 5.89 -105.07 -0.62 -4.71 16 5 C 0.61 9.50 7.43 -12.52 -0.09 9.41 16 6 O -0.54 -9.11 11.14 5.28 0.06 -9.05 16 7 N -0.64 -9.10 3.63 -186.73 -0.68 -9.78 16 8 C 0.13 1.69 8.20 -3.60 -0.03 1.66 16 9 C -0.10 -1.57 0.99 -154.80 -0.15 -1.72 16 10 C 0.11 1.53 6.22 -3.44 -0.02 1.51 16 11 C -0.13 -2.12 6.36 -25.55 -0.16 -2.28 16 12 C 0.18 3.96 5.39 -2.85 -0.02 3.95 16 13 N -0.60 -14.45 3.41 -170.50 -0.58 -15.04 16 14 C -0.23 -6.07 10.28 -15.06 -0.15 -6.22 16 15 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -25.88 10.30 55.49 0.57 -25.31 16 18 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 C 0.16 3.15 6.63 -3.17 -0.02 3.13 16 23 C 0.14 2.10 5.64 -82.02 -0.46 1.64 16 24 C 0.02 0.27 0.75 -155.66 -0.12 0.15 16 25 C -0.15 -1.87 8.20 37.16 0.30 -1.57 16 26 C -0.14 -1.55 7.94 37.16 0.30 -1.25 16 27 C -0.15 -2.00 8.19 37.16 0.30 -1.70 16 28 N -0.30 -4.25 11.80 33.90 0.40 -3.85 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.18 1.87 5.37 -52.49 -0.28 1.59 16 33 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 36 H 0.08 1.19 6.68 -51.93 -0.35 0.84 16 37 H 0.06 0.89 7.99 -51.93 -0.41 0.48 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.13 7.39 -51.93 -0.38 0.75 16 40 H 0.04 1.09 7.49 -51.93 -0.39 0.70 16 41 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 45 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 46 H 0.09 1.38 4.77 -51.93 -0.25 1.13 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.09 1.44 4.58 -51.93 -0.24 1.20 16 51 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 52 H 0.04 0.58 8.13 -51.93 -0.42 0.16 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -32.15 401.03 -8.60 -40.75 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.59 Total: 0.23 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.53 Total: 4.15 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.56 Total: -58.58 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.06 Total: -9.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.15 -8.60 -40.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073062809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.610 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds